Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016638.1

Orthogroup ID

OG0004909

Physical Location & Seq

Genomic Coordinates Reverse (-)

2319 .. 3003

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016638.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atggatgctaaaataaagggatgggctgcagggaaagaagggaatatgcgtgcactattgtcttcattgcaatccgttctttggcctgactgtggatgggagccagtttcactcacagatttgattacttctggttcagttaaaaaggtttatagaaaggccacattgtgtgtccatccagataaggttcaacagaaaggagctagtcttcaacaaaaatatactgcagagaaggtttttgatattcttaaggaagcttggaccaagttcaacaaggaggaactttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.76

Weight (kDa)

9.15

Isoelectric Point (pI)

24.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21660
fragaria_vesca	FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690
malus_domestica	MD00G1063400.v1.1
prunus_persica	Prupe.1G490900_v2.0.a1
pyrus_communis	pycom15g30630
rosa_chinensis	RchiOBHm_Chr6g0296551
rosa_laevigata	RLG00000011682 RLG00000011683 RLG00000011684
rosa_multiflora	Rmu_co8382091.1_g000001 Rmu_sc0004318.1_g000001 Rmu_sc0016638.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171450 Rroxscaffold_7G00171460 Rroxscaffold_7G00178670
rosa_rugosa	Rorug06G0263000 Rorug06G0263100
rosa_samantha	Rh4BG380500 Rh4CG395000 Rh6AG374600 Rh6AG374800 Rh6BG383000 Rh6CG388300 Rh6DG375700
rosa_wichuraiana	Rw6G032670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	81, 92
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	191, 212, 271
AluBI	AGCT	2 cut(s)	203, 257
AluI	AGCT	2 cut(s)	203, 257
Alw21I	GWGCWC	1 cut(s)	55
Alw44I	GTGCAC	1 cut(s)	51
AoxI	GGCC	2 cut(s)	83, 159
ApaLI	GTGCAC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	55
BbsI	GAAGAC	2 cut(s)	54, 200
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	3 cut(s)	15, 90, 183
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	2 cut(s)	27, 225
BfrI	CTTAAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	102
BpiI	GAAGAC	2 cut(s)	54, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 92
Bse1I	ACTGG	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	65
BseGI	GGATG	4 cut(s)	10, 26, 101, 175
BseLI	CCNNNNNNNGG	2 cut(s)	81, 92
BseMI	GCAATG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	13
BshFI	GGCC	2 cut(s)	85, 161
BsiHKAI	GWGCWC	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	81, 92
BsnI	GGCC	2 cut(s)	85, 161
Bsp1286I	GDGCHC	1 cut(s)	55
BspANI	GGCC	2 cut(s)	85, 161
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	2 cut(s)	31, 229
BspTI	CTTAAG	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	92
BstAFI	CTTAAG	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	4 cut(s)	10, 26, 101, 175
BstSFI	CTRYAG	2 cut(s)	27, 225
BstSLI	GKGCMC	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	13
BstV2I	GAAGAC	2 cut(s)	54, 200
BsuRI	GGCC	2 cut(s)	85, 161
BtsCI	GGATG	4 cut(s)	10, 26, 101, 175
Cac8I	GCNNGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	261
CviJI	RGCY	6 cut(s)	26, 85, 103, 161, 203, 257
CviKI_1	RGCY	6 cut(s)	26, 85, 103, 161, 203, 257
DdeI	CTNAG	1 cut(s)	288
DraIII	CACNNNGTG	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	261
FaiI	YATR	3 cut(s)	47, 153, 222
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	4 cut(s)	17, 33, 108, 162
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	85, 161
HindIII	AAGCTT	1 cut(s)	255
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	32, 226
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	4 cut(s)	29, 53, 70, 227
HpyF3I	CTNAG	1 cut(s)	288
LmnI	GCTCC	2 cut(s)	100, 200
LpnPI	CCDG	5 cut(s)	15, 99, 117, 117, 192
Lsp1109I	GCAGC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	204
MboII	GAAGA	2 cut(s)	54, 200
MhlI	GDGCHC	1 cut(s)	55
MnlI	CCTC	1 cut(s)	271
MseI	TTAA	2 cut(s)	141, 249
MspCI	CTTAAG	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	261
PstI	CTGCAG	2 cut(s)	31, 229
SaqAI	TTAA	2 cut(s)	141, 249
SatI	GCNGC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	5 cut(s)	150, 189, 205, 237, 259
SfcI	CTRYAG	2 cut(s)	27, 225
SinI	GGWCC	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SspMI	CTAG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	141, 249
Tru9I	TTAA	2 cut(s)	141, 249
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	54
TspGWI	ACGGA	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	261
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.