Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004909

Physical Location & Seq

Genomic Coordinates Reverse (-)

57357277 .. 57362844

Gene Structure 5568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG374600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCACTAGAGAAAGCCAACGCTGCAATGGCTGCATGCCAACGCTCCTTACGTATGAGAATTGCTGGGACTGTGGATCCTAAACTAGAGTTGTGGGCTGCAGAGAAAGAAGGGAATCTTCGTGCAATATTGTCTTCATTGCAAGACGTTCTTTGGCCTGACTCTGGATGGGAGCCAGTTTCACTCACAGATCTGATTACTTCTGGTTCAGTTAAAAAGGTTTACAGAAAGGCCACATTGTTTGTCCATCCAGATAAGCGGCGGCTTCCGACTTCCAGCCTTTGTCTTCCTAAATCCACATGGGTCTACGGAGCTCCCATTCCGTTTCTGGTTGGTGATCTTAGAATTCTTCATGACCAATTTCTCTGCTCGATCTGCTTTCCATTAACTCGTAGTCGATCAGCTGCAAGACGAGCTTTTGAGCAGATTTGCGAGCAATGGATCGAGAGAGTCTATAAGGAGATTCGGGTGAGACGGCAAGAGCAGCTCAACATAACCGTGTTCTGCGGTTCCTTTGTGGTATTGAGGTGCAGGCGTGCGGCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.74

Weight (kDa)

9.71

Isoelectric Point (pI)

63.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21660
fragaria_vesca	FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690 FvH4_2g27690
malus_domestica	MD00G1063400.v1.1
prunus_persica	Prupe.1G490900_v2.0.a1
pyrus_communis	pycom15g30630
rosa_chinensis	RchiOBHm_Chr6g0296551
rosa_laevigata	RLG00000011682 RLG00000011683 RLG00000011684
rosa_multiflora	Rmu_co8382091.1_g000001 Rmu_sc0004318.1_g000001 Rmu_sc0016638.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171450 Rroxscaffold_7G00171460 Rroxscaffold_7G00178670
rosa_rugosa	Rorug06G0263000 Rorug06G0263100
rosa_samantha	Rh4BG380500 Rh4CG395000 Rh6AG374600 Rh6AG374800 Rh6BG383000 Rh6CG388300 Rh6DG375700
rosa_wichuraiana	Rw6G032670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	4 cut(s)	259, 262, 507, 539
AclWI	GGATC	3 cut(s)	71, 84, 449
AcsI	RAATTY	1 cut(s)	345
AfiI	CCNNNNNNNGG	1 cut(s)	164
AluBI	AGCT	4 cut(s)	314, 404, 416, 487
AluI	AGCT	4 cut(s)	314, 404, 416, 487
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	3 cut(s)	71, 84, 449
AoxI	GGCC	2 cut(s)	155, 231
ApeKI	GCWGC	5 cut(s)	23, 32, 98, 404, 484
ApoI	RAATTY	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	347, 481
BamHI	GGATCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	316
BbsI	GAAGAC	2 cut(s)	126, 278
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	5 cut(s)	10, 19, 85, 391, 496
BccI	CCATC	2 cut(s)	162, 255
BceAI	ACGGC	1 cut(s)	491
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	2 cut(s)	8, 86
BfmI	CTRYAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	8 cut(s)	24, 33, 99, 260, 263, 405, 485, 540
BlsI	GCNGC	8 cut(s)	25, 34, 100, 261, 264, 406, 486, 541
BmiI	GGNNCC	4 cut(s)	78, 174, 511, 543
BpiI	GAAGAC	2 cut(s)	126, 278
BsaAI	YACGTR	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	176
Bse3DI	GCAATG	3 cut(s)	33, 137, 443
BseGI	GGATG	2 cut(s)	173, 247
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	3 cut(s)	33, 137, 443
BseNI	ACTGG	1 cut(s)	176
BseXI	GCAGC	5 cut(s)	10, 19, 85, 391, 496
BseYI	CCCAGC	1 cut(s)	65
BshFI	GGCC	2 cut(s)	157, 233
BsiHKAI	GWGCWC	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	466
BsmBI	CGTCTC	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	157, 233
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	6 cut(s)	76, 190, 337, 372, 398, 441
BspACI	CCGC	4 cut(s)	259, 262, 507, 539
BspANI	GGCC	2 cut(s)	157, 233
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	4 cut(s)	78, 174, 511, 543
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	3 cut(s)	71, 84, 449
BsrDI	GCAATG	3 cut(s)	33, 137, 443
BsrI	ACTGG	1 cut(s)	176
BssMI	GATC	6 cut(s)	76, 190, 337, 372, 398, 441
Bst4CI	ACNGT	2 cut(s)	73, 499
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	53
BstC8I	GCNNGC	4 cut(s)	37, 434, 533, 537
BstDEI	CTNAG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	173, 247
BstKTI	GATC	6 cut(s)	79, 193, 340, 375, 401, 444
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	6 cut(s)	76, 190, 337, 372, 398, 441
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 29, 32, 375, 413, 484
BstNSI	RCATGY	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	99
BstSNI	TACGTA	1 cut(s)	53
BstV1I	GCAGC	5 cut(s)	10, 19, 85, 391, 496
BstV2I	GAAGAC	2 cut(s)	126, 278
BstX2I	RGATCY	2 cut(s)	76, 190
BstYI	RGATCY	2 cut(s)	76, 190
BsuRI	GGCC	2 cut(s)	157, 233
BtsCI	GGATG	2 cut(s)	173, 247
Cac8I	GCNNGC	4 cut(s)	37, 434, 533, 537
CciI	TCATGA	1 cut(s)	352
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviAII	CATG	4 cut(s)	36, 300, 353, 546
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	6 cut(s)	78, 192, 339, 374, 400, 443
DpnII	GATC	6 cut(s)	76, 190, 337, 372, 398, 441
Ecl136II	GAGCTC	1 cut(s)	314
Eco105I	TACGTA	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	4 cut(s)	39, 303, 356, 549
FaiI	YATR	7 cut(s)	37, 56, 301, 354, 456, 494, 547
FalI	AAGNNNNNCTT	6 cut(s)	102, 134, 135, 167, 400, 432
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	4 cut(s)	35, 299, 352, 545
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	8 cut(s)	24, 33, 99, 260, 263, 405, 485, 540
FokI	GGATG	2 cut(s)	180, 234
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	8 cut(s)	24, 33, 99, 260, 263, 405, 485, 540
FspBI	CTAG	2 cut(s)	8, 86
GluI	GCNGC	8 cut(s)	24, 33, 99, 260, 263, 405, 485, 540
GsaI	CCCAGC	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	157, 233
Hin1II	CATG	4 cut(s)	39, 303, 356, 549
HinfI	GANTC	4 cut(s)	115, 161, 450, 463
HphI	GGTGA	2 cut(s)	347, 481
Hpy166II	GTNNAC	2 cut(s)	223, 307
Hpy188I	TCNGA	2 cut(s)	195, 270
Hpy188III	TCNNGA	4 cut(s)	165, 251, 353, 445
Hpy8I	GTNNAC	2 cut(s)	223, 307
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	2 cut(s)	73, 499
HpyCH4IV	ACGT	2 cut(s)	52, 147
HpyCH4V	TGCA	7 cut(s)	26, 35, 101, 125, 142, 407, 531
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 29, 32, 375, 413, 484
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	2 cut(s)	52, 147
Hsp92II	CATG	4 cut(s)	39, 303, 356, 549
Kzo9I	GATC	6 cut(s)	76, 190, 337, 372, 398, 441
LmnI	GCTCC	5 cut(s)	50, 172, 311, 319, 547
LpnPI	CCDG	9 cut(s)	51, 150, 171, 189, 189, 264, 289, 314, 517
Lsp1109I	GCAGC	5 cut(s)	10, 19, 85, 391, 496
MaeI	CTAG	2 cut(s)	8, 86
MaeII	ACGT	2 cut(s)	52, 147
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	6 cut(s)	78, 192, 339, 374, 400, 443
MboI	GATC	6 cut(s)	76, 190, 337, 372, 398, 441
MboII	GAAGA	4 cut(s)	110, 126, 278, 341
MflI	RGATCY	2 cut(s)	76, 190
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	3 cut(s)	60, 345, 359
MlyI	GAGTC	2 cut(s)	155, 459
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	1 cut(s)	519
MseI	TTAA	2 cut(s)	213, 386
MslI	CAYNNNNRTG	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	404
MwoI	GCNNNNNNNGC	6 cut(s)	23, 29, 32, 375, 413, 484
NdeII	GATC	6 cut(s)	76, 190, 337, 372, 398, 441
NlaIII	CATG	4 cut(s)	39, 303, 356, 549
NlaIV	GGNNCC	4 cut(s)	78, 174, 511, 543
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	39
PaeI	GCATGC	1 cut(s)	39
PagI	TCATGA	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	115, 463
PkrI	GCNGC	8 cut(s)	25, 34, 100, 261, 264, 406, 486, 541
PleI	GAGTC	2 cut(s)	155, 458
PpsI	GAGTC	2 cut(s)	155, 458
Ppu21I	YACGTR	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	65
PspN4I	GGNNCC	4 cut(s)	78, 174, 511, 543
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	2 cut(s)	76, 190
PvuII	CAGCTG	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	213, 386
SatI	GCNGC	8 cut(s)	24, 33, 99, 260, 263, 405, 485, 540
Sau3AI	GATC	6 cut(s)	76, 190, 337, 372, 398, 441
SchI	GAGTC	2 cut(s)	155, 459
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	8 cut(s)	55, 150, 222, 316, 406, 418, 489, 530
SfcI	CTRYAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	497
SnaBI	TACGTA	1 cut(s)	53
SphI	GCATGC	1 cut(s)	39
Sse9I	AATT	3 cut(s)	60, 345, 359
SsiI	CCGC	4 cut(s)	259, 262, 507, 539
SspI	AATATT	1 cut(s)	129
SspMI	CTAG	2 cut(s)	8, 86
SstI	GAGCTC	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	73, 499
TaiI	ACGT	2 cut(s)	55, 150
TaqI	TCGA	3 cut(s)	371, 397, 444
TasI	AATT	3 cut(s)	60, 345, 359
TauI	GCSGC	3 cut(s)	262, 265, 542
TfiI	GAWTC	2 cut(s)	115, 463
Tru1I	TTAA	2 cut(s)	213, 386
Tru9I	TTAA	2 cut(s)	213, 386
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	5 cut(s)	23, 32, 98, 404, 484
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	126, 341
TspGWI	ACGGA	2 cut(s)	312, 324
XapI	RAATTY	1 cut(s)	345
XceI	RCATGY	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	2 cut(s)	25, 325
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	2 cut(s)	8, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.