RLG00000016692

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018236
Physical Location & Seq
Forward (+)
9029470 .. 9032356
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016692

Sequence Viewer

Length: 1158 bp
ATGGTGATTCATGGAGCGCTCATCTTTCCACCGCCTCAAAGCCTTAGCAATCCGCTCTTCAATCTTGAGAAGCTGCGTGGCTTGAGTTGTTGCCGGCTCCCTGTCGTCCGGTTGCAGAAGAAGGCATCGGTTAGGAGGCTCTTGTCGCCGTCGCTATTGCCGAGTTTCCGCGTTCTAGGGTTGCCGTTAGGGCTACGCCTTCGCGGCGGCGCCGGTTCCAAAATGACAGCAACCACTACGAGGACTGCCTGCCCATGGGCGTTCTTGTGCCCTTTGGATGAGAGTTCTCCTCCACAGCCCCCGCTTGTCCCCAAGGCGAAGACTTTCGCTTCCATTATCTCTGATTCGATTGAATCTTCTGTTTCCATTAGTCAGTTGCCGGCTCCAGTTGTTCGTGGGGACAAAACGGTTGGGCACACTGCAGATCGTTGTCGACAAATGAACATTGATAAGGAGCGAGGGAACAATGGTGAAAAGTTTCCTAAACCCCAGTCAAGGTTGACTCGTCAAGAGTACAGGGTGAAATCCACATCAAATACACAGGAGCGTATTAGTTTAGTAGTTGAGCCAACAATGACTAACCCAATTGAATCAGTGGTTCCAGAAAACGATGTTAATCAAGTAATTACGCCACAAGGTGCAACCTCAATTGGTGTAGTTGTGGGCGCAAATCCTCCAGGAGTTGATCATGGCTCACCTCATGTGTGCCAAGTTCAGCAGGATATGGTTGACACAAATGGAAACCTTCTAGTTCAACACCAAGAGACTGGAGGACTTTCTCCGGTTCTTCGCGAGAACCAATATGCTATTCTGGCCCAAGAAGCCATTGAGAGCGTGGCTAATGATTTAATTGTTGAAATGGCAGACCATGTGATTAATGAAATAAGGGATAATTCCCTTGAGCTCAGGAAAGGTCCTGAAACTTCAGATATTGGTGCAGTTTCAAAACTAGCCTTGGTTGCAGTTGGCACGGAGTCTCATGCTTCACCAAGTGAGGTCAATGGAGACAAGGCAAATGATGTTGGCATGACATTGGTGGTGTCAAAATCGCAGCAAAAAGCTTTAAAAAAGAAATTGCGTGAGGCGAAAATGAATGCAGAAGCTTCAGTTCGTTACCCTGCACGTAACAGGGCTCCTGCCTCACGCCTTAATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

386

Amino Acids

41.56

Weight (kDa)

9.22

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AccBSI CCGCTC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 433
AccII CGCG 3 cut(s) 171, 204, 792
AciI CCGC 6 cut(s) 32, 53, 169, 204, 207, 302
AcuI CTGAAG 2 cut(s) 909, 1089
AcyI GRCGYC 1 cut(s) 210
AdeI CACNNNGTG 2 cut(s) 638, 992
AfaI GTAC 1 cut(s) 515
AfeI AGCGCT 1 cut(s) 18
AfiI CCNNNNNNNGG 3 cut(s) 240, 255, 495
AgsI TTSAA 6 cut(s) 61, 353, 590, 755, 857, 945
AjnI CCWGG 1 cut(s) 676
AjuI GAANNNNNNNTTGG 2 cut(s) 792, 824
AluBI AGCT 4 cut(s) 73, 904, 1061, 1103
AluI AGCT 4 cut(s) 73, 904, 1061, 1103
Alw21I GWGCWC 1 cut(s) 906
Alw26I GTCTC 3 cut(s) 758, 981, 999
Aor51HI AGCGCT 1 cut(s) 18
AoxI GGCC 1 cut(s) 813
ApeKI GCWGC 2 cut(s) 73, 1051
AseI ATTAAT 1 cut(s) 876
Asp700I GAANNNNTTC 2 cut(s) 323, 477
AspLEI GCGC 3 cut(s) 19, 212, 668
AspS9I GGNCC 2 cut(s) 814, 914
AsuHPI GGTGA 5 cut(s) 16, 482, 532, 687, 978
AvaII GGWCC 1 cut(s) 914
BaeGI GKGCMC 2 cut(s) 272, 417
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 2 cut(s) 906, 1135
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 906
BbvI GCAGC 2 cut(s) 60, 1063
BceAI ACGGC 2 cut(s) 133, 169
BciT130I CCWGG 1 cut(s) 678
BclI TGATCA 1 cut(s) 685
BcoDI GTCTC 3 cut(s) 758, 981, 999
BfaI CTAG 3 cut(s) 176, 749, 950
BfmI CTRYAG 1 cut(s) 420
BfoI RGCGCY 2 cut(s) 20, 213
BglI GCCNNNNNGGC 2 cut(s) 190, 204
BisI GCNGC 4 cut(s) 74, 205, 208, 1052
BlsI GCNGC 4 cut(s) 75, 206, 209, 1053
Bme1390I CCNGG 1 cut(s) 678
Bme18I GGWCC 1 cut(s) 914
BmgT120I GGNCC 2 cut(s) 814, 914
BmiI GGNNCC 6 cut(s) 98, 211, 217, 384, 600, 1134
BmrFI CCNGG 1 cut(s) 678
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 1 cut(s) 134
BmuI ACTGGG 1 cut(s) 484
BpiI GAAGAC 1 cut(s) 326
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpmI CTGGAG 3 cut(s) 369, 660, 789
Bpu10I CCTNAGC 2 cut(s) 44, 905
BpuEI CTTGAG 3 cut(s) 86, 103, 920
BsaAI YACGTR 1 cut(s) 1124
BsaBI GATNNNNATC 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 254, 312, 954
BsaWI WCCGGW 2 cut(s) 108, 781
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 255, 495
Bse118I RCCGGY 3 cut(s) 93, 212, 379
Bse1I ACTGG 3 cut(s) 386, 490, 772
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 1 cut(s) 678
BseDI CCNNGG 3 cut(s) 254, 312, 954
BseGI GGATG 1 cut(s) 283
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 3 cut(s) 240, 255, 495
BseMII CTCAG 1 cut(s) 919
BseNI ACTGG 3 cut(s) 386, 490, 772
BseRI GAGGAG 1 cut(s) 279
BseSI GKGCMC 2 cut(s) 272, 417
BseXI GCAGC 2 cut(s) 60, 1063
BsgI GTGCAG 2 cut(s) 957, 1104
Bsh1236I CGCG 3 cut(s) 171, 204, 792
BshFI GGCC 1 cut(s) 815
BshNI GGYRCC 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 906
BsiSI CCGG 5 cut(s) 94, 109, 213, 380, 782
BslFI GGGAC 2 cut(s) 293, 413
BslI CCNNNNNNNGG 3 cut(s) 240, 255, 495
BsmAI GTCTC 3 cut(s) 758, 981, 999
BsmFI GGGAC 2 cut(s) 293, 413
BsmI GAATGC 1 cut(s) 1099
BsnI GGCC 1 cut(s) 815
Bsp1286I GDGCHC 4 cut(s) 272, 417, 906, 1135
Bsp143I GATC 2 cut(s) 424, 685
Bsp19I CCATGG 1 cut(s) 254
Bsp68I TCGCGA 1 cut(s) 792
BspACI CCGC 6 cut(s) 32, 53, 169, 204, 207, 302
BspANI GGCC 1 cut(s) 815
BspCNI CTCAG 1 cut(s) 918
BspFNI CGCG 3 cut(s) 171, 204, 792
BspLI GGNNCC 6 cut(s) 98, 211, 217, 384, 600, 1134
BspMAI CTGCAG 1 cut(s) 424
BspQI GCTCTTC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 55
BsrFI RCCGGY 3 cut(s) 93, 212, 379
BsrI ACTGG 3 cut(s) 386, 490, 772
BssAI RCCGGY 3 cut(s) 93, 212, 379
BssECI CCNNGG 3 cut(s) 254, 312, 954
BssMI GATC 2 cut(s) 424, 685
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 3 cut(s) 254, 312, 954
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 1124
BstC8I GCNNGC 3 cut(s) 95, 250, 381
BstDEI CTNAG 2 cut(s) 44, 905
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 3 cut(s) 171, 204, 792
BstH2I RGCGCY 2 cut(s) 20, 213
BstHHI GCGC 3 cut(s) 19, 212, 668
BstKTI GATC 2 cut(s) 427, 688
BstMAI GTCTC 3 cut(s) 758, 981, 999
BstMBI GATC 2 cut(s) 424, 685
BstMWI GCNNNNNNNGC 6 cut(s) 145, 190, 204, 812, 821, 959
BstNI CCWGG 1 cut(s) 678
BstSCI CCNGG 1 cut(s) 676
BstSFI CTRYAG 1 cut(s) 420
BstSLI GKGCMC 2 cut(s) 272, 417
BstUI CGCG 3 cut(s) 171, 204, 792
BstV1I GCAGC 2 cut(s) 60, 1063
BstV2I GAAGAC 1 cut(s) 326
BstXI CCANNNNNNTGG 1 cut(s) 767
BsuRI GGCC 1 cut(s) 815
BtgI CCRYGG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 2 cut(s) 417, 600
BtuMI TCGCGA 1 cut(s) 792
Cac8I GCNNGC 3 cut(s) 95, 250, 381
CfoI GCGC 3 cut(s) 19, 212, 668
Cfr10I RCCGGY 3 cut(s) 93, 212, 379
Cfr13I GGNCC 2 cut(s) 814, 914
Csp6I GTAC 1 cut(s) 514
CviAII CATG 7 cut(s) 11, 255, 689, 701, 869, 980, 1027
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 2 cut(s) 44, 905
DinI GGCGCC 1 cut(s) 211
DpnI GATC 2 cut(s) 426, 687
DpnII GATC 2 cut(s) 424, 685
DraI TTTAAA 1 cut(s) 1065
DraIII CACNNNGTG 2 cut(s) 638, 992
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 904
Eco130I CCWWGG 3 cut(s) 254, 312, 954
Eco24I GRGCYC 2 cut(s) 906, 1135
Eco47I GGWCC 1 cut(s) 914
Eco47III AGCGCT 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 904
Eco57I CTGAAG 2 cut(s) 909, 1089
EcoICRI GAGCTC 1 cut(s) 904
EcoO109I RGGNCCY 1 cut(s) 914
EcoRII CCWGG 1 cut(s) 676
EcoT14I CCWWGG 3 cut(s) 254, 312, 954
EcoT38I GRGCYC 2 cut(s) 906, 1135
EgeI GGCGCC 1 cut(s) 211
EheI GGCGCC 1 cut(s) 211
ErhI CCWWGG 3 cut(s) 254, 312, 954
FaeI CATG 7 cut(s) 14, 258, 692, 704, 872, 983, 1030
FaqI GGGAC 2 cut(s) 293, 413
FatI CATG 7 cut(s) 10, 254, 688, 700, 868, 979, 1026
FauI CCCGC 1 cut(s) 309
FbaI TGATCA 1 cut(s) 685
FblI GTMKAC 1 cut(s) 433
Fnu4HI GCNGC 4 cut(s) 74, 205, 208, 1052
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 2 cut(s) 906, 1135
Fsp4HI GCNGC 4 cut(s) 74, 205, 208, 1052
FspBI CTAG 3 cut(s) 176, 749, 950
GlaI GCGC 3 cut(s) 18, 211, 667
GluI GCNGC 4 cut(s) 74, 205, 208, 1052
GsuI CTGGAG 3 cut(s) 369, 660, 789
HaeII RGCGCY 2 cut(s) 20, 213
HaeIII GGCC 1 cut(s) 815
HapII CCGG 5 cut(s) 94, 109, 213, 380, 782
HhaI GCGC 3 cut(s) 19, 212, 668
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 7 cut(s) 14, 258, 692, 704, 872, 983, 1030
Hin6I GCGC 3 cut(s) 17, 210, 666
HinP1I GCGC 3 cut(s) 17, 210, 666
HincII GTYRAC 3 cut(s) 434, 501, 730
HindII GTYRAC 3 cut(s) 434, 501, 730
HindIII AAGCTT 2 cut(s) 1059, 1101
HinfI GANTC 6 cut(s) 7, 344, 353, 502, 590, 974
HpaII CCGG 5 cut(s) 94, 109, 213, 380, 782
HphI GGTGA 5 cut(s) 16, 482, 532, 687, 978
Hpy166II GTNNAC 3 cut(s) 434, 501, 730
Hpy188I TCNGA 2 cut(s) 343, 928
Hpy188III TCNNGA 6 cut(s) 65, 509, 602, 791, 907, 917
Hpy8I GTNNAC 3 cut(s) 434, 501, 730
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 3 cut(s) 115, 209, 755
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4IV ACGT 1 cut(s) 1123
HpyCH4V TGCA 7 cut(s) 115, 422, 641, 938, 962, 1097, 1121
HpyF10VI GCNNNNNNNGC 6 cut(s) 145, 190, 204, 812, 821, 959
HpyF3I CTNAG 2 cut(s) 44, 905
HpySE526I ACGT 1 cut(s) 1123
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 7 cut(s) 14, 258, 692, 704, 872, 983, 1030
HspAI GCGC 3 cut(s) 17, 210, 666
KasI GGCGCC 1 cut(s) 209
KroI GCCGGC 2 cut(s) 93, 379
KroNI GCCGGC 2 cut(s) 95, 381
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 2 cut(s) 424, 685
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 6 cut(s) 14, 102, 388, 454, 544, 1138
Lsp1109I GCAGC 2 cut(s) 60, 1063
LweI GCATC 1 cut(s) 134
MaeI CTAG 3 cut(s) 176, 749, 950
MaeII ACGT 1 cut(s) 1123
MaeIII GTNAC 2 cut(s) 1112, 1124
MalI GATC 2 cut(s) 426, 687
MbiI CCGCTC 1 cut(s) 55
MboI GATC 2 cut(s) 424, 685
MboII GAAGA 5 cut(s) 49, 130, 331, 348, 779
MfeI CAATTG 2 cut(s) 585, 648
MhlI GDGCHC 4 cut(s) 272, 417, 906, 1135
MluCI AATT 6 cut(s) 585, 624, 648, 849, 892, 1073
Mly113I GGCGCC 1 cut(s) 210
MlyI GAGTC 2 cut(s) 496, 983
MroNI GCCGGC 2 cut(s) 93, 379
MroXI GAANNNNTTC 2 cut(s) 323, 477
MseI TTAA 5 cut(s) 615, 848, 876, 1064, 1149
MspI CCGG 5 cut(s) 94, 109, 213, 380, 782
MspR9I CCNGG 1 cut(s) 678
MunI CAATTG 2 cut(s) 585, 648
Mva1269I GAATGC 1 cut(s) 1099
MvaI CCWGG 1 cut(s) 678
MvnI CGCG 3 cut(s) 171, 204, 792
MwoI GCNNNNNNNGC 6 cut(s) 145, 190, 204, 812, 821, 959
NaeI GCCGGC 2 cut(s) 95, 381
NarI GGCGCC 1 cut(s) 210
NcoI CCATGG 1 cut(s) 254
NdeII GATC 2 cut(s) 424, 685
NgoMIV GCCGGC 2 cut(s) 93, 379
NlaIII CATG 7 cut(s) 14, 258, 692, 704, 872, 983, 1030
NlaIV GGNNCC 6 cut(s) 98, 211, 217, 384, 600, 1134
NmeAIII GCCGAG 1 cut(s) 186
NruI TCGCGA 1 cut(s) 792
PciSI GCTCTTC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PctI GAATGC 1 cut(s) 1099
PdiI GCCGGC 2 cut(s) 95, 381
PdmI GAANNNNTTC 2 cut(s) 323, 477
PfeI GAWTC 4 cut(s) 7, 344, 353, 590
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 4 cut(s) 75, 206, 209, 1053
PleI GAGTC 2 cut(s) 496, 982
PluTI GGCGCC 1 cut(s) 213
PpsI GAGTC 2 cut(s) 496, 982
Ppu21I YACGTR 1 cut(s) 1124
PpuMI RGGWCCY 1 cut(s) 914
PshBI ATTAAT 1 cut(s) 876
Psp124BI GAGCTC 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 914
Psp6I CCWGG 1 cut(s) 676
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 6 cut(s) 98, 211, 217, 384, 600, 1134
PspPI GGNCC 2 cut(s) 814, 914
PspPPI RGGWCCY 1 cut(s) 914
PstI CTGCAG 1 cut(s) 424
RruI TCGCGA 1 cut(s) 792
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
SacI GAGCTC 1 cut(s) 906
SalI GTCGAC 1 cut(s) 432
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 5 cut(s) 615, 848, 876, 1064, 1149
SatI GCNGC 4 cut(s) 74, 205, 208, 1052
Sau3AI GATC 2 cut(s) 424, 685
Sau96I GGNCC 2 cut(s) 814, 914
SchI GAGTC 2 cut(s) 496, 983
ScrFI CCNGG 1 cut(s) 678
SduI GDGCHC 4 cut(s) 272, 417, 906, 1135
SfaNI GCATC 1 cut(s) 134
SfcI CTRYAG 1 cut(s) 420
SfoI GGCGCC 1 cut(s) 211
SinI GGWCC 1 cut(s) 914
SmlI CTYRAG 3 cut(s) 65, 82, 899
SmoI CTYRAG 3 cut(s) 65, 82, 899
Sse9I AATT 6 cut(s) 585, 624, 648, 849, 892, 1073
SsiI CCGC 6 cut(s) 32, 53, 169, 204, 207, 302
SspDI GGCGCC 1 cut(s) 209
SspMI CTAG 3 cut(s) 176, 749, 950
SstI GAGCTC 1 cut(s) 906
StyD4I CCNGG 1 cut(s) 676
StyI CCWWGG 3 cut(s) 254, 312, 954
TaaI ACNGT 1 cut(s) 409
TaiI ACGT 1 cut(s) 1126
TaqI TCGA 2 cut(s) 347, 433
TasI AATT 6 cut(s) 585, 624, 648, 849, 892, 1073
TatI WGTACW 1 cut(s) 513
TauI GCSGC 2 cut(s) 207, 210
TfiI GAWTC 4 cut(s) 7, 344, 353, 590
Tru1I TTAA 5 cut(s) 615, 848, 876, 1064, 1149
Tru9I TTAA 5 cut(s) 615, 848, 876, 1064, 1149
TscAI CASTG 2 cut(s) 424, 600
TseI GCWGC 2 cut(s) 73, 1051
TspDTI ATGAA 3 cut(s) 455, 894, 1106
TspGWI ACGGA 1 cut(s) 986
TspRI CASTG 2 cut(s) 424, 600
VpaK11BI GGWCC 1 cut(s) 914
VspI ATTAAT 1 cut(s) 876
XcmI CCANNNNNNNNNTGG 1 cut(s) 832
XmiI GTMKAC 1 cut(s) 433
XmnI GAANNNNTTC 2 cut(s) 323, 477
XspI CTAG 3 cut(s) 176, 749, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.