Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000882.1

Orthogroup ID

OG0018236

Physical Location & Seq

Genomic Coordinates Forward (+)

71581 .. 72391

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000882.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgttacgtaagggttcaatgtcgttgaagaccattgctctcaagaaattgctcaatgatatctggaaactgtcggcctcgtggcgattggttctgcttgggaaaggatattttgacattcactttgccactgaggatgatctacaacgagtttggggaggcggaacttgcactcttgctaatgatcgatgtcggcaactaaatagtgataaggagctaagaaacattggagaaaagctttctaaagctctgcaaaaggtgactcgtcatgagtacagggtgaaaactacgtcaaaattacaagagcatactagtccacatgttaagctaacaatgactactaatcatgcaattgagtcagtagctgtggaaaatgttgataatcatgtaattactccaattggtgcagcttctaatggtgtagttgtgggcattgatcctcctagtgttgatcacggctcatctcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 zf-CCHC_4

Protein Analysis

156

Amino Acids

17.28

Weight (kDa)

9.33

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018236)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016692 RLG00000023520 RLG00000032010
rosa_multiflora	Rmu_sc0000882.1_g000017
rosa_samantha	Rh1CG247700 Rh2BG206600 Rh2CG531200 Rh4DG299000 Rh5BG187700 Rh5CG207500 Rh7CG229200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	1 cut(s)	431
AfaI	GTAC	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	18, 28
AhlI	ACTAGT	1 cut(s)	311
AluBI	AGCT	6 cut(s)	217, 238, 248, 328, 365, 410
AluI	AGCT	6 cut(s)	217, 238, 248, 328, 365, 410
AlwI	GGATC	1 cut(s)	431
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	407
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AsuHPI	GGTGA	2 cut(s)	271, 292
BauI	CACGAG	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	419
BclI	TGATCA	1 cut(s)	451
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	2 cut(s)	312, 444
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	187
BsaAI	YACGTR	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	33
BseCI	ATCGAT	1 cut(s)	187
BseGI	GGATG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	77
BshVI	ATCGAT	1 cut(s)	187
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	4 cut(s)	139, 184, 436, 451
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	124
BspDI	ATCGAT	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	268
BspPI	GGATC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	33
BssMI	GATC	4 cut(s)	139, 184, 436, 451
BssSI	CACGAG	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	132, 218
BstF5I	GGATG	1 cut(s)	142
BstKTI	GATC	4 cut(s)	142, 187, 439, 454
BstMBI	GATC	4 cut(s)	139, 184, 436, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	323
BstSNI	TACGTA	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	419
BstV2I	GAAGAC	1 cut(s)	35
Bsu15I	ATCGAT	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	77
BsuTUI	ATCGAT	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	365
CciI	TCATGA	1 cut(s)	268
ClaI	ATCGAT	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	4 cut(s)	269, 320, 347, 386
CviJI	RGCY	8 cut(s)	77, 217, 238, 248, 328, 365, 410, 459
CviKI_1	RGCY	8 cut(s)	77, 217, 238, 248, 328, 365, 410, 459
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	2 cut(s)	132, 218
DpnI	GATC	4 cut(s)	141, 186, 438, 453
DpnII	GATC	4 cut(s)	139, 184, 436, 451
EciI	GGCGGA	1 cut(s)	177
Eco105I	TACGTA	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	61
FaeI	CATG	4 cut(s)	272, 323, 350, 389
FaiI	YATR	5 cut(s)	270, 309, 321, 348, 387
FatI	CATG	4 cut(s)	268, 319, 346, 385
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	2 cut(s)	312, 444
GluI	GCNGC	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	272, 323, 350, 389
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	262, 356
HphI	GGTGA	2 cut(s)	271, 292
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188III	TCNNGA	3 cut(s)	43, 64, 269
Hpy8I	GTNNAC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	2 cut(s)	7, 290
HpyCH4V	TGCA	4 cut(s)	171, 253, 350, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	132, 218
HpySE526I	ACGT	2 cut(s)	7, 290
Hsp92II	CATG	4 cut(s)	272, 323, 350, 389
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	4 cut(s)	139, 184, 436, 451
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	2 cut(s)	49, 262
Lsp1109I	GCAGC	1 cut(s)	419
MaeI	CTAG	2 cut(s)	312, 444
MaeII	ACGT	2 cut(s)	7, 290
MaeIII	GTNAC	2 cut(s)	3, 259
MalI	GATC	4 cut(s)	141, 186, 438, 453
MboI	GATC	4 cut(s)	139, 184, 436, 451
MboII	GAAGA	1 cut(s)	40
MfeI	CAATTG	2 cut(s)	351, 399
MluCI	AATT	5 cut(s)	47, 296, 351, 390, 399
MlyI	GAGTC	2 cut(s)	256, 365
MnlI	CCTC	4 cut(s)	88, 127, 152, 450
MseI	TTAA	1 cut(s)	324
MunI	CAATTG	2 cut(s)	351, 399
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeII	GATC	4 cut(s)	139, 184, 436, 451
NlaIII	CATG	4 cut(s)	272, 323, 350, 389
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	323
PagI	TCATGA	1 cut(s)	268
PciI	ACATGT	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	2 cut(s)	256, 364
PpsI	GAGTC	2 cut(s)	256, 364
Ppu21I	YACGTR	1 cut(s)	8
PscI	ACATGT	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	4 cut(s)	139, 184, 436, 451
SchI	GAGTC	2 cut(s)	256, 365
SetI	ASST	9 cut(s)	10, 219, 240, 250, 261, 293, 330, 367, 412
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SnaBI	TACGTA	1 cut(s)	8
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	5 cut(s)	47, 296, 351, 390, 399
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	2 cut(s)	312, 444
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	2 cut(s)	10, 293
TaqI	TCGA	1 cut(s)	187
TasI	AATT	5 cut(s)	47, 296, 351, 390, 399
TatI	WGTACW	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	259
TspRI	CASTG	1 cut(s)	136
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	2 cut(s)	312, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.