Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018236

Physical Location & Seq

Genomic Coordinates Forward (+)

70708744 .. 70714233

Gene Structure 5490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG531200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAACATTGATAAGGAGAGAGGGAACAATGGTGAAAATTTTCCTAAACCTCCGTCAAGGTTGACTCGTCAAGAGTACAGGGTGAAATCCACATCAAATACACAGGAGCATATTGGTTTAGTAGTTGAGCCAACAATGACTATCCCAATTGAATCAGTGGTTCCAGAACATGATGTTAATCAAGTAATTACACCACAAGGTGCAACCTCAATTGGTGTAGTTGTGGGCGCAAATCCTCCAGGAGTTGATCATGGCTCACCTCGTGTGTGCCAAGTTCAGCAGGATATGGTTGACACAAATGGAAACCTTCTAGTTCAACACCAAGAGACTGGAGGCCTTTCTCCGGTTCTTCGAGAGAACCAATATGCTATTCTGGCCCAAGAAGCCATTGAGAGCGCAGCTAATGATTTAATTGATGAAATGGCAGACCATCAAGACCAAGAGGAAGCGAACCACTTTGTTATCTGGAAAAGATCAAGAAGGTACTGGAAGAGTGGAGATTATGGCAACTTCATTAGTTCTGATGAGATGGCTTCTGCAATTCTCTACTCGCTATCAAACTTCACCTCTTGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

192

Amino Acids

21.33

Weight (kDa)

4.8

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018236)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016692 RLG00000023520 RLG00000032010
rosa_multiflora	Rmu_sc0000882.1_g000017
rosa_samantha	Rh1CG247700 Rh2BG206600 Rh2CG531200 Rh4DG299000 Rh5BG187700 Rh5CG207500 Rh7CG229200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	37
AdeI	CACNNNGTG	2 cut(s)	200, 263
AfaI	GTAC	2 cut(s)	77, 485
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	152, 317
AjnI	CCWGG	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AluBI	AGCT	1 cut(s)	401
AluI	AGCT	1 cut(s)	401
Alw26I	GTCTC	1 cut(s)	320
AoxI	GGCC	2 cut(s)	334, 375
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	2 cut(s)	230, 398
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	4 cut(s)	44, 94, 249, 556
BauI	CACGAG	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	410
BccI	CCATC	2 cut(s)	438, 523
BciT130I	CCWGG	1 cut(s)	240
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	240
BpmI	CTGGAG	2 cut(s)	222, 351
BsaBI	GATNNNNATC	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	2 cut(s)	334, 491
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseNI	ACTGG	2 cut(s)	334, 491
BseXI	GCAGC	1 cut(s)	410
BshFI	GGCC	2 cut(s)	336, 377
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	336, 377
Bsp143I	GATC	2 cut(s)	247, 473
BspANI	GGCC	2 cut(s)	336, 377
BspLI	GGNNCC	1 cut(s)	162
BsrI	ACTGG	2 cut(s)	334, 491
BssMI	GATC	2 cut(s)	247, 473
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	485
BstHHI	GCGC	2 cut(s)	230, 398
BstKTI	GATC	2 cut(s)	250, 476
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	2 cut(s)	247, 473
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 383
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	336, 377
BtsIMutI	CAGTG	1 cut(s)	162
CfoI	GCGC	2 cut(s)	230, 398
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	76, 484
CviAII	CATG	2 cut(s)	170, 251
CviJI	RGCY	7 cut(s)	130, 255, 336, 377, 386, 401, 533
CviKI_1	RGCY	7 cut(s)	130, 255, 336, 377, 386, 401, 533
CviQI	GTAC	2 cut(s)	76, 484
DpnI	GATC	2 cut(s)	249, 475
DpnII	GATC	2 cut(s)	247, 473
DraIII	CACNNNGTG	2 cut(s)	200, 263
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco147I	AGGCCT	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	238
FaeI	CATG	2 cut(s)	173, 254
FaiI	YATR	6 cut(s)	111, 171, 252, 287, 366, 504
FatI	CATG	2 cut(s)	169, 250
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	399
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	2 cut(s)	229, 397
GluI	GCNGC	1 cut(s)	399
GsuI	CTGGAG	2 cut(s)	222, 351
HaeIII	GGCC	2 cut(s)	336, 377
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	2 cut(s)	230, 398
Hin1II	CATG	2 cut(s)	173, 254
Hin6I	GCGC	2 cut(s)	228, 396
HinP1I	GCGC	2 cut(s)	228, 396
HincII	GTYRAC	2 cut(s)	63, 292
HindII	GTYRAC	2 cut(s)	63, 292
HinfI	GANTC	2 cut(s)	64, 152
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	4 cut(s)	44, 94, 249, 556
Hpy166II	GTNNAC	2 cut(s)	63, 292
Hpy188I	TCNGA	1 cut(s)	523
Hpy188III	TCNNGA	6 cut(s)	71, 164, 353, 434, 466, 477
Hpy8I	GTNNAC	2 cut(s)	63, 292
HpyAV	CCTTC	2 cut(s)	317, 474
HpyCH4V	TGCA	2 cut(s)	203, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 383
Hsp92II	CATG	2 cut(s)	173, 254
HspAI	GCGC	2 cut(s)	228, 396
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	247, 473
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	1 cut(s)	410
MaeI	CTAG	1 cut(s)	311
MalI	GATC	2 cut(s)	249, 475
MboI	GATC	2 cut(s)	247, 473
MboII	GAAGA	2 cut(s)	341, 502
MfeI	CAATTG	2 cut(s)	147, 210
MluCI	AATT	6 cut(s)	37, 147, 186, 210, 411, 540
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	8 cut(s)	14, 60, 217, 246, 270, 326, 436, 577
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	3 cut(s)	177, 410, 577
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	2 cut(s)	147, 210
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	374, 383
NdeII	GATC	2 cut(s)	247, 473
NlaIII	CATG	2 cut(s)	173, 254
NlaIV	GGNNCC	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	152
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	400
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	376
RsaI	GTAC	2 cut(s)	77, 485
RsaNI	GTAC	2 cut(s)	76, 484
SaqAI	TTAA	3 cut(s)	177, 410, 577
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	2 cut(s)	247, 473
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	9 cut(s)	52, 62, 202, 209, 262, 309, 403, 485, 569
Sse9I	AATT	6 cut(s)	37, 147, 186, 210, 411, 540
SseBI	AGGCCT	1 cut(s)	336
SspMI	CTAG	1 cut(s)	311
StuI	AGGCCT	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	238
TaqI	TCGA	1 cut(s)	352
TasI	AATT	6 cut(s)	37, 147, 186, 210, 411, 540
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	3 cut(s)	177, 410, 577
Tru9I	TTAA	3 cut(s)	177, 410, 577
TscAI	CASTG	1 cut(s)	162
TseI	GCWGC	1 cut(s)	398
TspDTI	ATGAA	3 cut(s)	17, 432, 502
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.