Rh5BG187700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018236
Physical Location & Seq
Forward (+)
20616318 .. 20616650
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG187700.1

Sequence Viewer

Length: 333 bp
ATGACTACTAATCATGCAATTGAGTCAGTAGCTCTGGAAAATGTTGATAATCATGTAATTACTCCAATTGGTGCAGCTTCTAATGGTGTAGTTGTGGGCATTGATCCTCTTAGTGTTGATCACGGCTCACCTCAAGAGCGCCAAATTCCTATTAAGAAGAGTGTTCAGCAGGATATGGTTGATAGGATAAGCCCTAATAAAGGGAATCTTCAGGTTCAACACCATGATAATAGAGGCCTTTCTCCGGTTTTTCGAGAAAACCAATATGCACTTTTGGCCCAAGAAGCCATTGAGGGTGTTGCCAATGATTTAATTGAGGACATTGCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.93

Weight (kDa)

4.74

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 1 cut(s) 144
AcuI CTGAAG 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 200, 244
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 2 cut(s) 32, 77
AluI AGCT 2 cut(s) 32, 77
AlwI GGATC 1 cut(s) 98
AoxI GGCC 2 cut(s) 235, 276
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 144
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 120
BbvI GCAGC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 139
BclI TGATCA 1 cut(s) 118
BfaI CTAG 1 cut(s) 331
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 244
Bse3DI GCAATG 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 200, 244
BseMI GCAATG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 93
BshFI GGCC 2 cut(s) 237, 278
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 200, 244
BsnI GGCC 2 cut(s) 237, 278
Bsp143I GATC 2 cut(s) 103, 118
BspANI GGCC 2 cut(s) 237, 278
BspPI GGATC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 321
BssMI GATC 2 cut(s) 103, 118
Bst6I CTCTTC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 110
BstENI CCTNNNNNAGG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 2 cut(s) 106, 121
BstMBI GATC 2 cut(s) 103, 118
BstMWI GCNNNNNNNGC 2 cut(s) 275, 284
BstV1I GCAGC 1 cut(s) 86
BsuRI GGCC 2 cut(s) 237, 278
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 277
CviAII CATG 3 cut(s) 14, 53, 224
CviJI RGCY 7 cut(s) 32, 77, 126, 192, 237, 278, 287
CviKI_1 RGCY 7 cut(s) 32, 77, 126, 192, 237, 278, 287
DdeI CTNAG 1 cut(s) 110
DpnI GATC 2 cut(s) 105, 120
DpnII GATC 2 cut(s) 103, 118
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco147I AGGCCT 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 194
EcoNI CCTNNNNNAGG 1 cut(s) 198
FaeI CATG 3 cut(s) 17, 56, 227
FaiI YATR 5 cut(s) 15, 54, 176, 225, 267
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 3 cut(s) 13, 52, 223
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 331
GlaI GCGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 2 cut(s) 237, 278
HapII CCGG 1 cut(s) 245
HhaI GCGC 1 cut(s) 141
Hin1II CATG 3 cut(s) 17, 56, 227
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HinfI GANTC 2 cut(s) 23, 205
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 120
Hpy188III TCNNGA 3 cut(s) 35, 134, 254
HpyCH4V TGCA 4 cut(s) 17, 74, 269, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 284
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 3 cut(s) 17, 56, 227
HspAI GCGC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 103, 118
LpnPI CCDG 4 cut(s) 20, 155, 197, 258
Lsp1109I GCAGC 1 cut(s) 86
MaeI CTAG 1 cut(s) 331
MalI GATC 2 cut(s) 105, 120
MboI GATC 2 cut(s) 103, 118
MboII GAAGA 2 cut(s) 169, 200
MfeI CAATTG 2 cut(s) 18, 66
MluCI AATT 5 cut(s) 18, 57, 66, 144, 312
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 5 cut(s) 117, 141, 227, 286, 310
MseI TTAA 2 cut(s) 153, 311
MspI CCGG 1 cut(s) 245
MunI CAATTG 2 cut(s) 18, 66
MwoI GCNNNNNNNGC 2 cut(s) 275, 284
NdeII GATC 2 cut(s) 103, 118
NlaIII CATG 3 cut(s) 17, 56, 227
PceI AGGCCT 1 cut(s) 237
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 277
SaqAI TTAA 2 cut(s) 153, 311
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 103, 118
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 32
SetI ASST 4 cut(s) 34, 79, 133, 216
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 5 cut(s) 18, 57, 66, 144, 312
SseBI AGGCCT 1 cut(s) 237
SspMI CTAG 1 cut(s) 331
StuI AGGCCT 1 cut(s) 237
TaqI TCGA 1 cut(s) 253
TasI AATT 5 cut(s) 18, 57, 66, 144, 312
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 153, 311
Tru9I TTAA 2 cut(s) 153, 311
TseI GCWGC 1 cut(s) 74
XagI CCTNNNNNAGG 1 cut(s) 198
XapI RAATTY 1 cut(s) 144
XspI CTAG 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.