Rh2BG206600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018236
Physical Location & Seq
Forward (+)
19093694 .. 19094337
644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG206600.1

Sequence Viewer

Length: 582 bp
ATGAACATTGATAAGGAGAGAGGGAACAATGGTGAAATGTTTCCTAAACCTCCGTCAAGGTTGACTCGTCAAGAGTACAGGGTGAAATCCACATCAAATACACAGGAGCATATTCGTTTAGTAGTTGAGCCATCAATGACTATCCCAATTGAATCAGTGGTTCCAGAAAATGATGTTCATCAAGTAATTACGCCACAAGGTGCAACCTCAATTGGTGTAGTTGTGGGCGCAAATCCTCCAGGAGTTGATCATGGCTCACCTCGTGTGTGCCAAGTTCAGCAGGATATGGTTGACACAAATGGACACCTTCTAGTTCAACACCAAGCGTCTGGAGGCCTTTCTCCGGTTCCTCGAGAGAACCAATACGCTATTCTGGCCCAAGAAGCCATTGAGAGCGCAGCTAATGATTTAATTGATGAAATGGCAGACCATGTGATTAATGAAGTAAGGGATAATTCCCTTGAGCTCAGGAACGGGCCTGAAACTTCAGATCTTGGTGCAGTTTCAAAACTAGCCTTGGTTGCAGTTGGCACGGAGTCTCATGCTTCACCAACAGAAAGCTTTAAAAAAGAAATTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

20.84

Weight (kDa)

4.92

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 471
AdeI CACNNNGTG 2 cut(s) 200, 263
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 3 cut(s) 152, 317, 507
AjnI CCWGG 1 cut(s) 238
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 3 cut(s) 401, 466, 561
AluI AGCT 3 cut(s) 401, 466, 561
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 1 cut(s) 543
Ama87I CYCGRG 1 cut(s) 351
AoxI GGCC 3 cut(s) 334, 375, 476
ApeKI GCWGC 1 cut(s) 398
AseI ATTAAT 1 cut(s) 438
Asp700I GAANNNNTTC 1 cut(s) 39
AspLEI GCGC 2 cut(s) 230, 398
AspS9I GGNCC 2 cut(s) 376, 476
AsuHPI GGTGA 4 cut(s) 44, 94, 249, 540
AvaI CYCGRG 1 cut(s) 351
BanII GRGCYC 1 cut(s) 468
BauI CACGAG 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 410
BccI CCATC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 240
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 543
BfaI CTAG 2 cut(s) 311, 512
BglII AGATCT 1 cut(s) 490
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 351
BmgT120I GGNCC 2 cut(s) 376, 476
BmiI GGNNCC 2 cut(s) 162, 348
BmrFI CCNGG 1 cut(s) 240
BpmI CTGGAG 2 cut(s) 222, 351
Bpu10I CCTNAGC 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 482
BsaBI GATNNNNATC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 516
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 516
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 481
BseXI GCAGC 1 cut(s) 410
BsgI GTGCAG 1 cut(s) 519
BshFI GGCC 3 cut(s) 336, 377, 478
BsiHKAI GWGCWC 1 cut(s) 468
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 1 cut(s) 543
BsnI GGCC 3 cut(s) 336, 377, 478
BsoBI CYCGRG 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 468
Bsp143I GATC 2 cut(s) 247, 490
BspANI GGCC 3 cut(s) 336, 377, 478
BspCNI CTCAG 1 cut(s) 480
BspLI GGNNCC 2 cut(s) 162, 348
BssECI CCNNGG 1 cut(s) 516
BssMI GATC 2 cut(s) 247, 490
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 516
Bst2BI CACGAG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 467
BstHHI GCGC 2 cut(s) 230, 398
BstKTI GATC 2 cut(s) 250, 493
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 2 cut(s) 247, 490
BstMWI GCNNNNNNNGC 3 cut(s) 374, 383, 521
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 490
BstXI CCANNNNNNTGG 1 cut(s) 329
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 3 cut(s) 336, 377, 478
BtsIMutI CAGTG 1 cut(s) 162
CfoI GCGC 2 cut(s) 230, 398
Cfr13I GGNCC 2 cut(s) 376, 476
CseI GACGC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 76
CviAII CATG 3 cut(s) 251, 431, 542
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 467
DpnI GATC 2 cut(s) 249, 492
DpnII GATC 2 cut(s) 247, 490
DraI TTTAAA 1 cut(s) 565
DraIII CACNNNGTG 2 cut(s) 200, 263
Ecl136II GAGCTC 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 516
Eco147I AGGCCT 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 468
Eco53kI GAGCTC 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 351
EcoICRI GAGCTC 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 3 cut(s) 254, 434, 545
FaiI YATR 5 cut(s) 111, 252, 287, 432, 543
FatI CATG 3 cut(s) 250, 430, 541
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 399
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 2 cut(s) 311, 512
GlaI GCGC 2 cut(s) 229, 397
GluI GCNGC 1 cut(s) 399
GsuI CTGGAG 2 cut(s) 222, 351
HaeIII GGCC 3 cut(s) 336, 377, 478
HapII CCGG 1 cut(s) 344
HgaI GACGC 1 cut(s) 315
HhaI GCGC 2 cut(s) 230, 398
Hin1II CATG 3 cut(s) 254, 434, 545
Hin6I GCGC 2 cut(s) 228, 396
HinP1I GCGC 2 cut(s) 228, 396
HincII GTYRAC 2 cut(s) 63, 292
HindII GTYRAC 2 cut(s) 63, 292
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 3 cut(s) 64, 152, 536
HpaII CCGG 1 cut(s) 344
HphI GGTGA 4 cut(s) 44, 94, 249, 540
Hpy166II GTNNAC 2 cut(s) 63, 292
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 5 cut(s) 71, 164, 330, 353, 469
Hpy8I GTNNAC 2 cut(s) 63, 292
HpyAV CCTTC 1 cut(s) 317
HpyCH4V TGCA 3 cut(s) 203, 500, 524
HpyF10VI GCNNNNNNNGC 3 cut(s) 374, 383, 521
HpyF3I CTNAG 1 cut(s) 467
Hsp92II CATG 3 cut(s) 254, 434, 545
HspAI GCGC 2 cut(s) 228, 396
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 247, 490
LmnI GCTCC 1 cut(s) 106
Lsp1109I GCAGC 1 cut(s) 410
MaeI CTAG 2 cut(s) 311, 512
MalI GATC 2 cut(s) 249, 492
MboI GATC 2 cut(s) 247, 490
MfeI CAATTG 2 cut(s) 147, 210
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 468
MluCI AATT 6 cut(s) 147, 186, 210, 411, 454, 573
MlyI GAGTC 2 cut(s) 58, 545
MnlI CCTC 7 cut(s) 14, 60, 217, 246, 270, 326, 360
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 3 cut(s) 410, 438, 564
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 240
MunI CAATTG 2 cut(s) 147, 210
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 3 cut(s) 374, 383, 521
NdeII GATC 2 cut(s) 247, 490
NlaIII CATG 3 cut(s) 254, 434, 545
NlaIV GGNNCC 2 cut(s) 162, 348
PaeR7I CTCGAG 1 cut(s) 351
PceI AGGCCT 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 152
PfoI TCCNGGA 1 cut(s) 238
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 2 cut(s) 58, 544
PpsI GAGTC 2 cut(s) 58, 544
PshBI ATTAAT 1 cut(s) 438
Psp124BI GAGCTC 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 162, 348
PspPI GGNCC 2 cut(s) 376, 476
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SacI GAGCTC 1 cut(s) 468
SaqAI TTAA 3 cut(s) 410, 438, 564
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 2 cut(s) 247, 490
Sau96I GGNCC 2 cut(s) 376, 476
SchI GAGTC 2 cut(s) 58, 545
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 468
SetI ASST 9 cut(s) 52, 62, 202, 209, 262, 309, 403, 468, 563
Sfr274I CTCGAG 1 cut(s) 351
SlaI CTCGAG 1 cut(s) 351
SmlI CTYRAG 2 cut(s) 351, 461
SmoI CTYRAG 2 cut(s) 351, 461
Sse9I AATT 6 cut(s) 147, 186, 210, 411, 454, 573
SseBI AGGCCT 1 cut(s) 336
SspMI CTAG 2 cut(s) 311, 512
SstI GAGCTC 1 cut(s) 468
StuI AGGCCT 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 516
TaqI TCGA 1 cut(s) 352
TasI AATT 6 cut(s) 147, 186, 210, 411, 454, 573
TatI WGTACW 1 cut(s) 75
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 3 cut(s) 410, 438, 564
Tru9I TTAA 3 cut(s) 410, 438, 564
TscAI CASTG 1 cut(s) 162
TseI GCWGC 1 cut(s) 398
TspDTI ATGAA 4 cut(s) 17, 167, 432, 456
TspGWI ACGGA 2 cut(s) 42, 548
TspRI CASTG 1 cut(s) 162
VspI ATTAAT 1 cut(s) 438
XhoI CTCGAG 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 2 cut(s) 311, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.