Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018236

Physical Location & Seq

Genomic Coordinates Reverse (-)

50989130 .. 50995217

Gene Structure 6088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG247700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAACATTAATAAGGAGCGAAAGAACAATGGTGAAAAGTTTCCTAAACCTCCGTCAAGGTTGACTCGTCAAGAGTACAGGGTGAAATCCACATCAAAAACACAGGAGCATATTAGTTTAGTAGTTGAGCCAACAATGACTAACCCAATTGAATCAGTGGCTCCAGAAAATGATGTTAATCAAGTAATTACGCCACAAGGTGCAACCTCAATTGGTGTAGTTGTGGGCGCAAATCCTCCAGGAGTTGATCATGGCTCACCTCATGTGTGCCAAGTTCAGCAGGATATGGTTGACACAAATGGAAACCTTCTAGTTCAACACCAAGAGACTGGAGGCCTTTCTCCGGTTCTTCGAGAGAACCAATATGCAATTTTGGCCCAAGAAGCCATTGAGAGCTCGGCTAATGATTTAATTGATGAAATGGCAGACCATGTGATTAATGAAAAGAGGTATGACAATCTGCCTTTCCCCGCAAAATTTTCCTCCCCAGATTTCTGTTACCAAGGTCACTGTGAAGCGGTTATGACTTGTGAATGGCTCATGTTGAAAACTTGGGCTGTTCATAATCCAAATTATCCTTTTACCATTGAATGGTTTAATTGCCCTGGACAAATTAACCCTGTGAGAAAATTTTTGGTGCAAAGTTTTTCCGGGAAGGATGGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

24.79

Weight (kDa)

5.34

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018236)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016692 RLG00000023520 RLG00000032010
rosa_multiflora	Rmu_sc0000882.1_g000017
rosa_samantha	Rh1CG247700 Rh2BG206600 Rh2CG531200 Rh4DG299000 Rh5BG187700 Rh5CG207500 Rh7CG229200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	591
AciI	CCGC	2 cut(s)	471, 518
AcsI	RAATTY	2 cut(s)	476, 629
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	343, 591
AgsI	TTSAA	4 cut(s)	152, 317, 547, 590
AjnI	CCWGG	2 cut(s)	238, 604
AluBI	AGCT	1 cut(s)	396
AluI	AGCT	1 cut(s)	396
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	1 cut(s)	320
AoxI	GGCC	2 cut(s)	334, 375
ApoI	RAATTY	2 cut(s)	476, 629
AseI	ATTAAT	2 cut(s)	9, 438
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	376
AsuC2I	CCSGG	1 cut(s)	652
AsuHPI	GGTGA	3 cut(s)	44, 94, 249
BanII	GRGCYC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	398
BccI	CCATC	1 cut(s)	653
BciT130I	CCWGG	2 cut(s)	240, 606
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	311
Bme1390I	CCNGG	3 cut(s)	240, 606, 652
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	3 cut(s)	240, 606, 652
BpmI	CTGGAG	3 cut(s)	147, 222, 351
BpuMI	CCSGG	1 cut(s)	652
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	502, 604
BsaWI	WCCGGW	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 591
Bse1I	ACTGG	1 cut(s)	334
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	240, 606
BseDI	CCNNGG	2 cut(s)	502, 604
BseGI	GGATG	1 cut(s)	664
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	343, 591
BseNI	ACTGG	1 cut(s)	334
BshFI	GGCC	2 cut(s)	336, 377
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	344, 651
BslI	CCNNNNNNNGG	2 cut(s)	343, 591
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	336, 377
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	2 cut(s)	471, 518
BspANI	GGCC	2 cut(s)	336, 377
BspLI	GGNNCC	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	2 cut(s)	502, 604
BssMI	GATC	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	2 cut(s)	240, 606
Bst4CI	ACNGT	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	664
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 383
BstNI	CCWGG	2 cut(s)	240, 606
BstSCI	CCNGG	3 cut(s)	238, 604, 650
BstXI	CCANNNNNNTGG	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	336, 377
BtsCI	GGATG	1 cut(s)	664
BtsIMutI	CAGTG	2 cut(s)	162, 508
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	4 cut(s)	251, 263, 431, 541
CviQI	GTAC	1 cut(s)	76
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
DraIII	CACNNNGTG	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	502
Eco147I	AGGCCT	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	396
EcoRII	CCWGG	2 cut(s)	238, 604
EcoT14I	CCWWGG	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	4 cut(s)	254, 266, 434, 544
FatI	CATG	4 cut(s)	250, 262, 430, 540
FauI	CCCGC	1 cut(s)	478
FbaI	TGATCA	1 cut(s)	247
FriOI	GRGCYC	1 cut(s)	398
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	1 cut(s)	229
GsuI	CTGGAG	3 cut(s)	147, 222, 351
HaeIII	GGCC	2 cut(s)	336, 377
HapII	CCGG	2 cut(s)	344, 651
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	254, 266, 434, 544
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	2 cut(s)	63, 292
HindII	GTYRAC	2 cut(s)	63, 292
HinfI	GANTC	2 cut(s)	64, 152
HpaII	CCGG	2 cut(s)	344, 651
HphI	GGTGA	3 cut(s)	44, 94, 249
Hpy166II	GTNNAC	2 cut(s)	63, 292
Hpy188III	TCNNGA	3 cut(s)	71, 164, 353
Hpy8I	GTNNAC	2 cut(s)	63, 292
HpyAV	CCTTC	2 cut(s)	317, 649
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4V	TGCA	3 cut(s)	203, 368, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 383
Hsp92II	CATG	4 cut(s)	254, 266, 434, 544
HspAI	GCGC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	3 cut(s)	16, 106, 166
MaeI	CTAG	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	497, 506
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	1 cut(s)	341
MfeI	CAATTG	2 cut(s)	147, 210
MhlI	GDGCHC	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	7 cut(s)	60, 217, 246, 270, 326, 441, 493
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	6 cut(s)	9, 177, 410, 438, 597, 615
MspI	CCGG	2 cut(s)	344, 651
MspR9I	CCNGG	3 cut(s)	240, 606, 652
MunI	CAATTG	2 cut(s)	147, 210
MvaI	CCWGG	2 cut(s)	240, 606
MwoI	GCNNNNNNNGC	2 cut(s)	374, 383
NciI	CCSGG	1 cut(s)	652
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	4 cut(s)	254, 266, 434, 544
NlaIV	GGNNCC	1 cut(s)	162
NmeAIII	GCCGAG	1 cut(s)	377
NmuCI	GTSAC	1 cut(s)	506
PceI	AGGCCT	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	591
PfoI	TCCNGGA	2 cut(s)	238, 650
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PshBI	ATTAAT	2 cut(s)	9, 438
Psp124BI	GAGCTC	1 cut(s)	398
Psp6I	CCWGG	2 cut(s)	238, 604
PspGI	CCWGG	2 cut(s)	238, 604
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	376
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SacI	GAGCTC	1 cut(s)	398
SaqAI	TTAA	6 cut(s)	9, 177, 410, 438, 597, 615
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	3 cut(s)	240, 606, 652
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	9 cut(s)	52, 62, 202, 209, 262, 309, 398, 452, 508
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	2 cut(s)	471, 518
SspMI	CTAG	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	336
StyD4I	CCNGG	3 cut(s)	238, 604, 650
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	1 cut(s)	512
TaqI	TCGA	1 cut(s)	352
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	6 cut(s)	9, 177, 410, 438, 597, 615
Tru9I	TTAA	6 cut(s)	9, 177, 410, 438, 597, 615
TscAI	CASTG	2 cut(s)	162, 515
TseFI	GTSAC	1 cut(s)	506
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	4 cut(s)	17, 432, 456, 551
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	2 cut(s)	162, 515
Van91I	CCANNNNNTGG	1 cut(s)	591
VspI	ATTAAT	2 cut(s)	9, 438
XapI	RAATTY	2 cut(s)	476, 629
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.