Rh5CG207500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018236
Physical Location & Seq
Forward (+)
20934590 .. 20942745
8156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG207500.1

Sequence Viewer

Length: 450 bp
ATGACTACTAATCATGCAATTGAGTCAGTAGCTCTGGAAAATGTTGATAATCATGTAATTACTCCAATTGGTGCAGCTTCTAATGGTGTAGTTGTGGGCATTGATCCTCCTAGTGTTGATCACGGCTCACCTCAAGAGCGCAAAATTCCTATTAAGAAGAGTGTTCAGCAGGATATGGTTCAACACCATGATAATAAAGGTCTTTCTCCGGTTCTTCGAGAAAACCAATATGCTCTTTTGGCCCAAGAAGCCATTGAGGGTGTTGCCAATGATTTAATTGAGGACATTGCAGACAAGGTAATCAATGAAACAAGTGATCAATCCCTTGAGCTCAGGGAAAGACTTGAAACTTCGGATCAGGGTACAGTTTCAAATCTTACCTTACCAAGCGAGGTCAACGGAGATAAGGAAAATGATGTTGGCATGACACTGGTAGCAGAAGACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.07

Weight (kDa)

4.36

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 98, 363
AcsI RAATTY 1 cut(s) 144
AfaI GTAC 1 cut(s) 364
AgsI TTSAA 3 cut(s) 182, 347, 372
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
AluBI AGCT 3 cut(s) 32, 77, 331
AluI AGCT 3 cut(s) 32, 77, 331
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 2 cut(s) 98, 363
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 144
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 120
BanII GRGCYC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 139
BclI TGATCA 2 cut(s) 118, 316
BfaI CTAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 241
Bpu10I CCTNAGC 1 cut(s) 332
BpuEI CTTGAG 2 cut(s) 117, 347
BsaWI WCCGGW 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 346
BseNI ACTGG 1 cut(s) 435
BseXI GCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 93
BshFI GGCC 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 209
BsnI GGCC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 4 cut(s) 103, 118, 316, 355
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 345
BspPI GGATC 2 cut(s) 98, 363
BsrDI GCAATG 1 cut(s) 285
BsrI ACTGG 1 cut(s) 435
BssMI GATC 4 cut(s) 103, 118, 316, 355
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 332
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 4 cut(s) 106, 121, 319, 358
BstMBI GATC 4 cut(s) 103, 118, 316, 355
BstMWI GCNNNNNNNGC 2 cut(s) 239, 248
BstV1I GCAGC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 428
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 363
CviAII CATG 4 cut(s) 14, 53, 188, 424
CviJI RGCY 6 cut(s) 32, 77, 126, 242, 251, 331
CviKI_1 RGCY 6 cut(s) 32, 77, 126, 242, 251, 331
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 1 cut(s) 332
DpnI GATC 4 cut(s) 105, 120, 318, 357
DpnII GATC 4 cut(s) 103, 118, 316, 355
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Ecl136II GAGCTC 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 333
FaeI CATG 4 cut(s) 17, 56, 191, 427
FaiI YATR 6 cut(s) 15, 54, 176, 189, 231, 425
FatI CATG 4 cut(s) 13, 52, 187, 423
FbaI TGATCA 2 cut(s) 118, 316
Fnu4HI GCNGC 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 1 cut(s) 242
HapII CCGG 1 cut(s) 209
HhaI GCGC 1 cut(s) 141
Hin1II CATG 4 cut(s) 17, 56, 191, 427
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 2 cut(s) 23, 443
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 3 cut(s) 35, 134, 218
Hpy8I GTNNAC 1 cut(s) 397
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 3 cut(s) 17, 74, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 248
HpyF3I CTNAG 1 cut(s) 332
Hsp92II CATG 4 cut(s) 17, 56, 191, 427
HspAI GCGC 1 cut(s) 139
Ksp22I TGATCA 2 cut(s) 118, 316
Kzo9I GATC 4 cut(s) 103, 118, 316, 355
LpnPI CCDG 6 cut(s) 20, 155, 222, 319, 344, 416
Lsp1109I GCAGC 1 cut(s) 86
MaeI CTAG 1 cut(s) 111
MalI GATC 4 cut(s) 105, 120, 318, 357
MboI GATC 4 cut(s) 103, 118, 316, 355
MboII GAAGA 2 cut(s) 169, 206
MfeI CAATTG 2 cut(s) 18, 66
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 5 cut(s) 18, 57, 66, 144, 276
MlyI GAGTC 2 cut(s) 32, 437
MnlI CCTC 5 cut(s) 117, 141, 250, 274, 385
MseI TTAA 3 cut(s) 153, 275, 448
MspI CCGG 1 cut(s) 209
MunI CAATTG 2 cut(s) 18, 66
MwoI GCNNNNNNNGC 2 cut(s) 239, 248
NdeII GATC 4 cut(s) 103, 118, 316, 355
NlaIII CATG 4 cut(s) 17, 56, 191, 427
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 2 cut(s) 31, 437
PpsI GAGTC 2 cut(s) 31, 437
Psp124BI GAGCTC 1 cut(s) 333
PspPI GGNCC 1 cut(s) 241
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 3 cut(s) 153, 275, 448
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 4 cut(s) 103, 118, 316, 355
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 2 cut(s) 32, 437
SduI GDGCHC 1 cut(s) 333
SetI ASST 8 cut(s) 34, 79, 133, 202, 300, 333, 383, 396
SmlI CTYRAG 2 cut(s) 132, 326
SmoI CTYRAG 2 cut(s) 132, 326
Sse9I AATT 5 cut(s) 18, 57, 66, 144, 276
SspMI CTAG 1 cut(s) 111
SstI GAGCTC 1 cut(s) 333
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 1 cut(s) 217
TasI AATT 5 cut(s) 18, 57, 66, 144, 276
Tru1I TTAA 3 cut(s) 153, 275, 448
Tru9I TTAA 3 cut(s) 153, 275, 448
TscAI CASTG 1 cut(s) 435
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 321
TspGWI ACGGA 1 cut(s) 414
TspRI CASTG 1 cut(s) 435
XapI RAATTY 1 cut(s) 144
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.