Rh4DG299000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018236
Physical Location & Seq
Reverse (-)
52110605 .. 52115688
5084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG299000.1

Sequence Viewer

Length: 657 bp
ATGACTATCCCAATTGAATCAGTGGTTCCAGAAAATGAGGTTAATCAAGTAATTACGCCACAAGGTGCAACCTCAATTGGTGTAGTTGTGGGCTCAAATCCTCCAGGAGTTGATCATGGCTCACCTCGTGTGTGCCAAGTTCAGCAGGATATGGTTGACACAAATGGAAACCTTCAAGTTCAACACCAAGAGACTGGAGGCCTTTCTCCGGTTTTTCGAGAGAACCAATATGCTATTCTGGCCCAAGAAGCCATTGAGAGCGCAGCTAATGATTTAATTGTTGAAATGGCAGACCATGTGATTAATGAAATAAGGGATTATTCCCTTGAGCTCAGGAATGGTCCTGAAACTTCAGATCTTGGTGCAGTTTCAAAACTAGCCTTGCTTGCAGTTGGCACAGAGTCTCATGCTTCACCAAGTGAGGTCAATGGAGACAAGGCAAATGATGTTGGCATGACATTGGTGGTGTCAAAATCGCAGCAGAAAGCTTTAAAAAAGAAATTGCGTGAGGAGAAAATGAATGCAGAAGCTTCACTTCGTTACCCTGCACTTTTCCACTGGCTCGCCCCATCTTTCGGATTGTATAATTACAGCTATTATAGTACAAATGGAAAACCTCCTAGAACACTTGTGAGAGACCATGCTAGTGTTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

23.62

Weight (kDa)

5.11

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 336
AdeI CACNNNGTG 3 cut(s) 65, 128, 419
AfaI GTAC 1 cut(s) 604
AfiI CCNNNNNNNGG 2 cut(s) 208, 575
AgsI TTSAA 5 cut(s) 17, 176, 182, 284, 372
AjnI CCWGG 1 cut(s) 103
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AluBI AGCT 5 cut(s) 266, 331, 488, 530, 594
AluI AGCT 5 cut(s) 266, 331, 488, 530, 594
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 4 cut(s) 185, 408, 426, 630
AoxI GGCC 2 cut(s) 199, 240
ApeKI GCWGC 2 cut(s) 263, 478
AseI ATTAAT 1 cut(s) 303
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 241, 341
AsuHPI GGTGA 2 cut(s) 114, 405
AvaII GGWCC 1 cut(s) 341
BanII GRGCYC 2 cut(s) 95, 333
BauI CACGAG 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 275, 490
BccI CCATC 1 cut(s) 577
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 4 cut(s) 185, 408, 426, 630
BfaI CTAG 3 cut(s) 377, 621, 645
BglII AGATCT 1 cut(s) 355
BisI GCNGC 2 cut(s) 264, 479
BlsI GCNGC 2 cut(s) 265, 480
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 241, 341
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 105
BpmI CTGGAG 2 cut(s) 87, 216
Bpu10I CCTNAGC 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 347
BsaI GGTCTC 1 cut(s) 630
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 575
Bse1I ACTGG 2 cut(s) 199, 563
BseBI CCWGG 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 208, 575
BseMII CTCAG 1 cut(s) 346
BseNI ACTGG 2 cut(s) 199, 563
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 2 cut(s) 275, 490
BsgI GTGCAG 2 cut(s) 384, 531
BshFI GGCC 2 cut(s) 201, 242
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 208, 575
BsmAI GTCTC 4 cut(s) 185, 408, 426, 630
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 2 cut(s) 201, 242
Bso31I GGTCTC 1 cut(s) 630
Bsp1286I GDGCHC 2 cut(s) 95, 333
Bsp143I GATC 2 cut(s) 112, 355
BspANI GGCC 2 cut(s) 201, 242
BspCNI CTCAG 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 27
BspTNI GGTCTC 1 cut(s) 630
BsrI ACTGG 2 cut(s) 199, 563
BssMI GATC 2 cut(s) 112, 355
BssSI CACGAG 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 387, 564
BstDEI CTNAG 1 cut(s) 332
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 2 cut(s) 115, 358
BstMAI GTCTC 4 cut(s) 185, 408, 426, 630
BstMBI GATC 2 cut(s) 112, 355
BstMWI GCNNNNNNNGC 3 cut(s) 239, 248, 386
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 275, 490
BstX2I RGATCY 1 cut(s) 355
BstXI CCANNNNNNTGG 1 cut(s) 194
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 2 cut(s) 201, 242
BtsIMutI CAGTG 2 cut(s) 27, 556
Cac8I GCNNGC 2 cut(s) 387, 564
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 241, 341
Csp6I GTAC 1 cut(s) 603
CviAII CATG 5 cut(s) 116, 296, 407, 454, 641
CviQI GTAC 1 cut(s) 603
DdeI CTNAG 1 cut(s) 332
DpnI GATC 2 cut(s) 114, 357
DpnII GATC 2 cut(s) 112, 355
DraI TTTAAA 1 cut(s) 492
DraIII CACNNNGTG 3 cut(s) 65, 128, 419
Ecl136II GAGCTC 1 cut(s) 331
Eco147I AGGCCT 1 cut(s) 201
Eco24I GRGCYC 2 cut(s) 95, 333
Eco31I GGTCTC 1 cut(s) 630
Eco47I GGWCC 1 cut(s) 341
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 103
EcoT38I GRGCYC 2 cut(s) 95, 333
FaeI CATG 5 cut(s) 119, 299, 410, 457, 644
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FatI CATG 5 cut(s) 115, 295, 406, 453, 640
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 264, 479
FriOI GRGCYC 2 cut(s) 95, 333
Fsp4HI GCNGC 2 cut(s) 264, 479
FspBI CTAG 3 cut(s) 377, 621, 645
GlaI GCGC 1 cut(s) 262
GluI GCNGC 2 cut(s) 264, 479
GsuI CTGGAG 2 cut(s) 87, 216
HaeIII GGCC 2 cut(s) 201, 242
HapII CCGG 1 cut(s) 209
HhaI GCGC 1 cut(s) 263
Hin1II CATG 5 cut(s) 119, 299, 410, 457, 644
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 2 cut(s) 486, 528
HinfI GANTC 2 cut(s) 17, 401
HpaII CCGG 1 cut(s) 209
HphI GGTGA 2 cut(s) 114, 405
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 355, 578
Hpy188III TCNNGA 4 cut(s) 29, 218, 334, 344
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 182
HpyCH4V TGCA 5 cut(s) 68, 365, 389, 524, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 248, 386
HpyF3I CTNAG 1 cut(s) 332
Hsp92II CATG 5 cut(s) 119, 299, 410, 457, 644
HspAI GCGC 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 2 cut(s) 112, 355
Lsp1109I GCAGC 2 cut(s) 275, 490
MaeI CTAG 3 cut(s) 377, 621, 645
MaeIII GTNAC 1 cut(s) 539
MalI GATC 2 cut(s) 114, 357
MboI GATC 2 cut(s) 112, 355
MfeI CAATTG 2 cut(s) 12, 75
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 2 cut(s) 95, 333
MluCI AATT 6 cut(s) 12, 51, 75, 276, 500, 586
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 8 cut(s) 31, 82, 111, 135, 191, 415, 502, 627
MseI TTAA 4 cut(s) 42, 275, 303, 491
MslI CAYNNNNRTG 1 cut(s) 645
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 105
MunI CAATTG 2 cut(s) 12, 75
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 239, 248, 386
NdeII GATC 2 cut(s) 112, 355
NlaIII CATG 5 cut(s) 119, 299, 410, 457, 644
NlaIV GGNNCC 1 cut(s) 27
PceI AGGCCT 1 cut(s) 201
PctI GAATGC 1 cut(s) 526
PfeI GAWTC 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 103
PkrI GCNGC 2 cut(s) 265, 480
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PshBI ATTAAT 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 2 cut(s) 241, 341
PsuI RGATCY 1 cut(s) 355
RsaI GTAC 1 cut(s) 604
RsaNI GTAC 1 cut(s) 603
RseI CAYNNNNRTG 1 cut(s) 645
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 4 cut(s) 42, 275, 303, 491
SatI GCNGC 2 cut(s) 264, 479
Sau3AI GATC 2 cut(s) 112, 355
Sau96I GGNCC 2 cut(s) 241, 341
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 2 cut(s) 95, 333
SinI GGWCC 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 6 cut(s) 12, 51, 75, 276, 500, 586
SseBI AGGCCT 1 cut(s) 201
SspMI CTAG 3 cut(s) 377, 621, 645
SstI GAGCTC 1 cut(s) 333
StuI AGGCCT 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 103
TaqI TCGA 1 cut(s) 217
TasI AATT 6 cut(s) 12, 51, 75, 276, 500, 586
TatI WGTACW 1 cut(s) 602
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 4 cut(s) 42, 275, 303, 491
Tru9I TTAA 4 cut(s) 42, 275, 303, 491
TscAI CASTG 2 cut(s) 27, 563
TseI GCWGC 2 cut(s) 263, 478
TspDTI ATGAA 2 cut(s) 321, 533
TspRI CASTG 2 cut(s) 27, 563
VpaK11BI GGWCC 1 cut(s) 341
VspI ATTAAT 1 cut(s) 303
XspI CTAG 3 cut(s) 377, 621, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.