Rh7CG229200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018236
Physical Location & Seq
Forward (+)
21390428 .. 21391018
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG229200.1

Sequence Viewer

Length: 591 bp
ATGAACATTGATAAGGAGCCAAAGAACAATGGTGAAAAGCTTCCTAAACCTCCGTCAAGGTTGACACGTCAAGAGTACAGGGTGAAATCCACATCAAAAACACAGGAGCATATTAGTTTAGTAGTTGAGCCAACAATGACTAACCCAACTGAATCAGTGGCCCCAGAAAATGATGTTAATCAAGTAATTACGCCACAAGGTGCAACCTCAATTGGTGTAGTTGTGGGCGCAAATCCTCCAGGTGTTGATCATGGCTCACCTCAAGAGTGCCAAGTTCAGCAGGATATAGTTGACACAAATGGAAACCTTCTAGTTCAACACCAAGAGAATGGAGGCCTTTCTCCGGTTCTTCAAGAAAACCAATATGCTATTCTGGCCCAAGAAGCCATTGAGAGCGCGGCTAATGATTTAATTGAAGAAATGGCAGACCATGTGATTAATGAAATAAGGGATAACTCCCTTGAGCTCAGGAAAGGTCCTGAAACTTCAGATCATGGTGCAGTTTCAAAACTAGCTTGGTTGCAGTTGGCATGGAGTCTCATGCTTCCCCAAGCGAGGTCAATGGAGACAAGGCAAATGATGTTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.5

Weight (kDa)

4.77

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 398
AciI CCGC 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 471
AdeI CACNNNGTG 1 cut(s) 200
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 2 cut(s) 343, 555
AflIII ACRYGT 1 cut(s) 65
AgsI TTSAA 4 cut(s) 317, 353, 416, 507
AjiI CACGTC 1 cut(s) 68
AjnI CCWGG 1 cut(s) 238
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 3 cut(s) 40, 466, 515
AluI AGCT 3 cut(s) 40, 466, 515
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 2 cut(s) 542, 560
AoxI GGCC 3 cut(s) 159, 334, 375
AseI ATTAAT 1 cut(s) 438
Asp700I GAANNNNTTC 1 cut(s) 39
AspLEI GCGC 2 cut(s) 230, 398
AspS9I GGNCC 3 cut(s) 160, 376, 476
AsuHPI GGTGA 3 cut(s) 44, 94, 249
AvaII GGWCC 1 cut(s) 476
BanII GRGCYC 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 468
BciT130I CCWGG 1 cut(s) 240
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 2 cut(s) 542, 560
BfaI CTAG 2 cut(s) 311, 512
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 476
BmgBI CACGTC 1 cut(s) 68
BmgT120I GGNCC 3 cut(s) 160, 376, 476
BmiI GGNNCC 2 cut(s) 18, 162
BmrFI CCNGG 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 467
BpuEI CTTGAG 2 cut(s) 246, 482
BsaBI GATNNNNATC 1 cut(s) 177
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 555
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 1 cut(s) 240
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 2 cut(s) 343, 555
BseMII CTCAG 1 cut(s) 481
BsgI GTGCAG 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 3 cut(s) 161, 336, 377
BsiHKAI GWGCWC 1 cut(s) 468
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 343, 555
BsmAI GTCTC 2 cut(s) 542, 560
BsnI GGCC 3 cut(s) 161, 336, 377
Bsp1286I GDGCHC 1 cut(s) 468
Bsp143I GATC 2 cut(s) 247, 490
BspACI CCGC 1 cut(s) 398
BspANI GGCC 3 cut(s) 161, 336, 377
BspCNI CTCAG 1 cut(s) 480
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 2 cut(s) 18, 162
BssMI GATC 2 cut(s) 247, 490
Bst2UI CCWGG 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 467
BstFNI CGCG 1 cut(s) 398
BstHHI GCGC 2 cut(s) 230, 398
BstKTI GATC 2 cut(s) 250, 493
BstMAI GTCTC 2 cut(s) 542, 560
BstMBI GATC 2 cut(s) 247, 490
BstMWI GCNNNNNNNGC 2 cut(s) 374, 383
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstUI CGCG 1 cut(s) 398
BstXI CCANNNNNNTGG 1 cut(s) 329
BsuRI GGCC 3 cut(s) 161, 336, 377
BtrI CACGTC 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 162
CfoI GCGC 2 cut(s) 230, 398
Cfr13I GGNCC 3 cut(s) 160, 376, 476
Csp6I GTAC 1 cut(s) 76
CviAII CATG 6 cut(s) 251, 431, 494, 531, 541, 588
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 467
DpnI GATC 2 cut(s) 249, 492
DpnII GATC 2 cut(s) 247, 490
DraIII CACNNNGTG 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 466
Eco147I AGGCCT 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 476
Eco53kI GAGCTC 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 471
EcoICRI GAGCTC 1 cut(s) 466
EcoO109I RGGNCCY 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 468
FaeI CATG 6 cut(s) 254, 434, 497, 534, 544, 591
FaiI YATR 9 cut(s) 111, 252, 287, 366, 432, 495, 532, 542, 589
FatI CATG 6 cut(s) 250, 430, 493, 530, 540, 587
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 399
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 2 cut(s) 311, 512
GlaI GCGC 2 cut(s) 229, 397
GluI GCNGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 3 cut(s) 161, 336, 377
HapII CCGG 1 cut(s) 344
HhaI GCGC 2 cut(s) 230, 398
Hin1II CATG 6 cut(s) 254, 434, 497, 534, 544, 591
Hin6I GCGC 2 cut(s) 228, 396
HinP1I GCGC 2 cut(s) 228, 396
HincII GTYRAC 2 cut(s) 63, 292
HindII GTYRAC 2 cut(s) 63, 292
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 2 cut(s) 152, 535
HpaII CCGG 1 cut(s) 344
HphI GGTGA 3 cut(s) 44, 94, 249
Hpy166II GTNNAC 2 cut(s) 63, 292
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 5 cut(s) 71, 263, 353, 469, 479
Hpy8I GTNNAC 2 cut(s) 63, 292
HpyAV CCTTC 1 cut(s) 317
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 203, 500, 523
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 383
HpyF3I CTNAG 1 cut(s) 467
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 6 cut(s) 254, 434, 497, 534, 544, 591
HspAI GCGC 2 cut(s) 228, 396
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 247, 490
LmnI GCTCC 2 cut(s) 16, 106
MaeI CTAG 2 cut(s) 311, 512
MaeII ACGT 1 cut(s) 67
MalI GATC 2 cut(s) 249, 492
MboI GATC 2 cut(s) 247, 490
MboII GAAGA 2 cut(s) 341, 428
MfeI CAATTG 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 468
MluCI AATT 3 cut(s) 186, 210, 411
MlyI GAGTC 1 cut(s) 544
MnlI CCTC 6 cut(s) 60, 217, 246, 270, 326, 549
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 3 cut(s) 177, 410, 438
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 240
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 240
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 374, 383
NdeII GATC 2 cut(s) 247, 490
NlaIII CATG 6 cut(s) 254, 434, 497, 534, 544, 591
NlaIV GGNNCC 2 cut(s) 18, 162
PceI AGGCCT 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 1 cut(s) 543
PpsI GAGTC 1 cut(s) 543
PpuMI RGGWCCY 1 cut(s) 476
PshBI ATTAAT 1 cut(s) 438
Psp124BI GAGCTC 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 18, 162
PspPI GGNCC 3 cut(s) 160, 376, 476
PspPPI RGGWCCY 1 cut(s) 476
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SacI GAGCTC 1 cut(s) 468
SaqAI TTAA 3 cut(s) 177, 410, 438
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 2 cut(s) 247, 490
Sau96I GGNCC 3 cut(s) 160, 376, 476
SchI GAGTC 1 cut(s) 544
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 468
SinI GGWCC 1 cut(s) 476
SmlI CTYRAG 2 cut(s) 261, 461
SmoI CTYRAG 2 cut(s) 261, 461
Sse9I AATT 3 cut(s) 186, 210, 411
SseBI AGGCCT 1 cut(s) 336
SsiI CCGC 1 cut(s) 398
SspMI CTAG 2 cut(s) 311, 512
SstI GAGCTC 1 cut(s) 468
StuI AGGCCT 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 238
TaiI ACGT 1 cut(s) 70
TasI AATT 3 cut(s) 186, 210, 411
TatI WGTACW 1 cut(s) 75
TauI GCSGC 1 cut(s) 401
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 3 cut(s) 177, 410, 438
Tru9I TTAA 3 cut(s) 177, 410, 438
TscAI CASTG 1 cut(s) 162
TspDTI ATGAA 2 cut(s) 17, 456
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 476
VspI ATTAAT 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 2 cut(s) 311, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.