RLG00000016816

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016984
Physical Location & Seq
Reverse (-)
10305636 .. 10306059
424 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016816

Sequence Viewer

Length: 327 bp
ATGGTTGATGGAGGAGCTCTTCATGGTGGTGGCCCAGCGCTGTTACTCAAGGAGGGAGAATCCATGAAGCGGAGGCGGGCTGGTGAGCTTAGGGTGGATGATGCCGCTGACGGAGCTGAAGATAAGGATGAAGATAAAGATGTGGTTTTATGGAATGCTATGGTTACTGGTTATTCTCAGATTATTAGATTTGAGAATGCTATTAGTTTATTTGAAAAGATAAGGGAGTGGAAGATTGAGTTAAATGTTGTCAACTGGAGAATGATGGCTTTGCATGGATGTGTTTCGATAAATGATGGCTTGTGGCTCATAGCCACATGTTGTTAA

Protein Analysis

109

Amino Acids

12.03

Weight (kDa)

4.95

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 46 - 84 9e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 70, 76, 105
AcuI CTGAAG 1 cut(s) 138
AfeI AGCGCT 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 69
AflIII ACRYGT 1 cut(s) 317
AgsI TTSAA 1 cut(s) 215
AluBI AGCT 3 cut(s) 17, 88, 116
AluI AGCT 3 cut(s) 17, 88, 116
Alw21I GWGCWC 1 cut(s) 19
Aor51HI AGCGCT 1 cut(s) 39
AoxI GGCC 1 cut(s) 31
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 95
BanII GRGCYC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 19
BccI CCATC 3 cut(s) 2, 259, 290
BfoI RGCGCY 1 cut(s) 41
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 32
BmsI GCATC 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 172, 260
BseGI GGATG 3 cut(s) 103, 133, 284
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 172, 260
BseRI GAGGAG 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 34
BshFI GGCC 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 69
BsmI GAATGC 2 cut(s) 160, 202
BsnI GGCC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 19
BspACI CCGC 3 cut(s) 70, 76, 105
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 190
BspQI GCTCTTC 1 cut(s) 24
BsrI ACTGG 2 cut(s) 172, 260
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 89, 177
BstF5I GGATG 3 cut(s) 103, 133, 284
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 321
BsuRI GGCC 1 cut(s) 33
BtsCI GGATG 3 cut(s) 103, 133, 284
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 32
CviAII CATG 4 cut(s) 23, 64, 275, 318
CviJI RGCY 9 cut(s) 17, 33, 80, 88, 116, 269, 300, 307, 314
CviKI_1 RGCY 9 cut(s) 17, 33, 80, 88, 116, 269, 300, 307, 314
DdeI CTNAG 2 cut(s) 89, 177
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Ecl136II GAGCTC 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 19
Eco47III AGCGCT 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 19
FaeI CATG 4 cut(s) 26, 67, 278, 321
FaiI YATR 7 cut(s) 24, 65, 151, 161, 276, 311, 319
FatI CATG 4 cut(s) 22, 63, 274, 317
FauI CCCGC 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 3 cut(s) 110, 140, 291
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 105
GlaI GCGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 277
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 1 cut(s) 33
HhaI GCGC 1 cut(s) 40
Hin1II CATG 4 cut(s) 26, 67, 278, 321
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 180
Hpy8I GTNNAC 1 cut(s) 253
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 89, 177
Hsp92II CATG 4 cut(s) 26, 67, 278, 321
HspAI GCGC 1 cut(s) 38
LguI GCTCTTC 1 cut(s) 24
LmnI GCTCC 2 cut(s) 14, 113
LpnPI CCDG 4 cut(s) 48, 66, 153, 241
LweI GCATC 1 cut(s) 91
MaeIII GTNAC 2 cut(s) 42, 163
MboII GAAGA 4 cut(s) 11, 131, 143, 244
MhlI GDGCHC 1 cut(s) 19
MnlI CCTC 3 cut(s) 5, 46, 66
MseI TTAA 2 cut(s) 242, 325
MslI CAYNNNNRTG 2 cut(s) 27, 279
MspA1I CMGCKG 1 cut(s) 107
Mva1269I GAATGC 2 cut(s) 160, 202
MwoI GCNNNNNNNGC 1 cut(s) 113
NlaIII CATG 4 cut(s) 26, 67, 278, 321
NspI RCATGY 1 cut(s) 321
PciI ACATGT 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 24
PctI GAATGC 2 cut(s) 160, 202
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 106
PscI ACATGT 1 cut(s) 317
Psp124BI GAGCTC 1 cut(s) 19
PspFI CCCAGC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 32
RseI CAYNNNNRTG 2 cut(s) 27, 279
SacI GAGCTC 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 242, 325
SatI GCNGC 1 cut(s) 105
Sau96I GGNCC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 19
SetI ASST 3 cut(s) 19, 90, 118
SfaNI GCATC 1 cut(s) 91
SmiMI CAYNNNNRTG 2 cut(s) 27, 279
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
SsiI CCGC 3 cut(s) 70, 76, 105
SstI GAGCTC 1 cut(s) 19
TaqI TCGA 1 cut(s) 287
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 242, 325
Tru9I TTAA 2 cut(s) 242, 325
TspDTI ATGAA 3 cut(s) 11, 80, 144
TspGWI ACGGA 1 cut(s) 126
XceI RCATGY 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.