Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016984

Physical Location & Seq

Genomic Coordinates Reverse (-)

60618061 .. 60618740

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGATTGCGTGCGATACGTCCGTGATGGGGAGCAGCGACGATGCGGAGGCGACGGGGAGCTTCGAGGACGCGGCGGTGAGGGAGCGGCGAGGATGCGGCGTCGATGAAAGTGACGGAGTGGTCGCGGTGGTTGATAGAGGAGCTCTTCATGGTGATGGCCCGGCGCTGCTACTGGAGGAGGGAGTCCATGAAGCGGAGGAAGCCGGTGCGCTTGAGATGGATGATGCCTTTGACGAAGCCGGAGATAAGGAGGTCGTAGAGCATTCTCACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

9.45

Weight (kDa)

4.09

Isoelectric Point (pI)

26.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016984)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0164601
rosa_laevigata	RLG00000016816
rosa_multiflora	Rmu_sc0001557.1_g000008 Rmu_sc0002489.1_g000013 Rmu_sc0002532.1_g000028 Rmu_sc0003710.1_g000006
rosa_roxburghii	Rroxscaffold_2G00087760 Rroxscaffold_4G00327750 Rroxscaffold_7G00160260
rosa_samantha	Rh3AG292100 Rh3BG329400 Rh3CG326500 Rh3DG325400 Rh7AG458700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccBSI	CCGCTC	1 cut(s)	85
AccII	CGCG	2 cut(s)	71, 125
AciI	CCGC	7 cut(s)	44, 71, 74, 85, 96, 125, 194
AcyI	GRCGYC	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	27, 193
AluBI	AGCT	2 cut(s)	60, 143
AluI	AGCT	2 cut(s)	60, 143
Alw21I	GWGCWC	1 cut(s)	145
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	33, 166
AspLEI	GCGC	2 cut(s)	166, 211
AspS9I	GGNCC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	3 cut(s)	88, 164, 260
BaeI	ACNNNNGTAYC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	2 cut(s)	45, 153
BccI	CCATC	3 cut(s)	19, 149, 211
BcnI	CCSGG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	167
BisI	GCNGC	5 cut(s)	34, 72, 86, 97, 167
BlsI	GCNGC	5 cut(s)	35, 73, 87, 98, 168
Bme1390I	CCNGG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	3 cut(s)	31, 83, 214
BpmI	CTGGAG	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 193
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	98, 226
BseLI	CCNNNNNNNGG	2 cut(s)	27, 193
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	153, 191
BseXI	GCAGC	2 cut(s)	45, 153
Bsh1236I	CGCG	2 cut(s)	71, 125
BshFI	GGCC	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	161, 204, 240
BslI	CCNNNNNNNGG	2 cut(s)	27, 193
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	145
BspACI	CCGC	7 cut(s)	44, 71, 74, 85, 96, 125, 194
BspANI	GGCC	1 cut(s)	159
BspFNI	CGCG	2 cut(s)	71, 125
BspQI	GCTCTTC	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	203
BssNI	GRCGYC	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	98, 226
BstFNI	CGCG	2 cut(s)	71, 125
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	166, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	159
BstUI	CGCG	2 cut(s)	71, 125
BstV1I	GCAGC	2 cut(s)	45, 153
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	98, 226
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	2 cut(s)	166, 211
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	2 cut(s)	77, 88
CviAII	CATG	2 cut(s)	149, 188
CviJI	RGCY	5 cut(s)	60, 143, 159, 203, 239
CviKI_1	RGCY	5 cut(s)	60, 143, 159, 203, 239
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	145
FaeI	CATG	2 cut(s)	152, 191
FaiI	YATR	2 cut(s)	150, 189
FatI	CATG	2 cut(s)	148, 187
Fnu4HI	GCNGC	5 cut(s)	34, 72, 86, 97, 167
FokI	GGATG	2 cut(s)	105, 233
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	5 cut(s)	34, 72, 86, 97, 167
GlaI	GCGC	2 cut(s)	165, 210
GluI	GCNGC	5 cut(s)	34, 72, 86, 97, 167
GsuI	CTGGAG	1 cut(s)	194
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	3 cut(s)	161, 204, 240
HgaI	GACGC	2 cut(s)	77, 88
HhaI	GCGC	2 cut(s)	166, 211
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	152, 191
Hin6I	GCGC	2 cut(s)	164, 209
HinP1I	GCGC	2 cut(s)	164, 209
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	3 cut(s)	161, 204, 240
HphI	GGTGA	3 cut(s)	88, 164, 260
Hpy99I	CGWCG	3 cut(s)	41, 55, 104
HpyCH4IV	ACGT	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	152, 191
HspAI	GCGC	2 cut(s)	164, 209
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	4 cut(s)	30, 57, 82, 140
LpnPI	CCDG	4 cut(s)	158, 174, 217, 253
Lsp1109I	GCAGC	2 cut(s)	45, 153
LweI	GCATC	3 cut(s)	31, 83, 214
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	110
MbiI	CCGCTC	1 cut(s)	85
MboII	GAAGA	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	9 cut(s)	40, 58, 72, 83, 131, 169, 172, 190, 244
MseI	TTAA	1 cut(s)	274
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	3 cut(s)	161, 204, 240
MspR9I	CCNGG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	262
MvnI	CGCG	2 cut(s)	71, 125
MwoI	GCNNNNNNNGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	161
NlaIII	CATG	2 cut(s)	152, 191
NmuCI	GTSAC	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	150
PctI	GAATGC	1 cut(s)	262
PkrI	GCNGC	5 cut(s)	35, 73, 87, 98, 168
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	274
SatI	GCNGC	5 cut(s)	34, 72, 86, 97, 167
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	4 cut(s)	20, 62, 145, 255
SfaNI	GCATC	3 cut(s)	31, 83, 214
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SsiI	CCGC	7 cut(s)	44, 71, 74, 85, 96, 125, 194
SstI	GAGCTC	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	159
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	63, 102
TauI	GCSGC	3 cut(s)	74, 88, 99
Tru1I	TTAA	1 cut(s)	274
Tru9I	TTAA	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	2 cut(s)	33, 166
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	120, 137, 204
TspGWI	ACGGA	2 cut(s)	10, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.