Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0016984

Physical Location & Seq

Genomic Coordinates Reverse (-)

35329252 .. 35329665

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG292100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGTGCAGAGTGATGGAGGAGCTCTTTATGGTCATGGCCCGACGCTACTACTTGAGGAGGGAGTCCATGAAATGGAGGCAGCCGGTGAGCTTGGGGTGGATGATGCCGCTGATGGAGCCGAAGATAAGGATGAAGATAAGGATGTGGTTTCATGGAATGCTATGGTTACTGGGTATTCTCAGATTGTTAGATTTGAGAATGCTATTGGTTTATTTGAAAACATAAGGGAGGAGAAGATTGAGTTACATGTTGTCACTTGGGGTGCTATGATTGCAGGAAATGCACAAAGGGAACATGGTTACCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

103

Amino Acids

11.18

Weight (kDa)

4.26

Isoelectric Point (pI)

17.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	47 - 93	3.6e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016984)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0164601
rosa_laevigata	RLG00000016816
rosa_multiflora	Rmu_sc0001557.1_g000008 Rmu_sc0002489.1_g000013 Rmu_sc0002532.1_g000028 Rmu_sc0003710.1_g000006
rosa_roxburghii	Rroxscaffold_2G00087760 Rroxscaffold_4G00327750 Rroxscaffold_7G00160260
rosa_samantha	Rh3AG292100 Rh3BG329400 Rh3CG326500 Rh3DG325400 Rh7AG458700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	73
AciI	CCGC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	218
AluBI	AGCT	2 cut(s)	23, 91
AluI	AGCT	2 cut(s)	23, 91
Alw21I	GWGCWC	1 cut(s)	25
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	2 cut(s)	8, 107
BisI	GCNGC	2 cut(s)	81, 108
BlsI	GCNGC	2 cut(s)	82, 109
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	175
BseGI	GGATG	3 cut(s)	106, 136, 148
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	3 cut(s)	33, 71, 245
BseXI	GCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmI	GAATGC	2 cut(s)	163, 205
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	180
BstEII	GGTNACC	1 cut(s)	299
BstF5I	GGATG	3 cut(s)	106, 136, 148
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 272, 281
BstNSI	RCATGY	1 cut(s)	251
BstPI	GGTNACC	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	3 cut(s)	106, 136, 148
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	52
CviAII	CATG	5 cut(s)	35, 68, 153, 248, 296
CviJI	RGCY	5 cut(s)	23, 39, 83, 91, 119
CviKI_1	RGCY	5 cut(s)	23, 39, 83, 91, 119
DdeI	CTNAG	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	23
Eco91I	GGTNACC	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	5 cut(s)	38, 71, 156, 251, 299
FatI	CATG	5 cut(s)	34, 67, 152, 247, 295
Fnu4HI	GCNGC	2 cut(s)	81, 108
FokI	GGATG	3 cut(s)	113, 143, 155
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	2 cut(s)	81, 108
GluI	GCNGC	2 cut(s)	81, 108
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	84
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	5 cut(s)	38, 71, 156, 251, 299
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	183
Hpy99I	CGWCG	1 cut(s)	46
HpyCH4V	TGCA	3 cut(s)	7, 275, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 272, 281
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	5 cut(s)	38, 71, 156, 251, 299
LmnI	GCTCC	2 cut(s)	20, 116
LpnPI	CCDG	3 cut(s)	97, 156, 261
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	94
MaeIII	GTNAC	4 cut(s)	166, 243, 253, 299
MboII	GAAGA	3 cut(s)	134, 146, 247
MhlI	GDGCHC	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	5 cut(s)	11, 49, 52, 70, 223
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	84
Mva1269I	GAATGC	2 cut(s)	163, 205
MwoI	GCNNNNNNNGC	3 cut(s)	116, 272, 281
NlaIII	CATG	5 cut(s)	38, 71, 156, 251, 299
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	251
PciI	ACATGT	1 cut(s)	247
PctI	GAATGC	2 cut(s)	163, 205
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	82, 109
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PscI	ACATGT	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	25
PspEI	GGTNACC	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	25
SatI	GCNGC	2 cut(s)	81, 108
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	2 cut(s)	25, 93
SfaNI	GCATC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SsiI	CCGC	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	25
TauI	GCSGC	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	3 cut(s)	84, 141, 147
Van91I	CCANNNNNTGG	1 cut(s)	73
XceI	RCATGY	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.