Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016984

Physical Location & Seq

Genomic Coordinates Reverse (-)

35646633 .. 35647945

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG325400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTCGATGACCACTGTTTGGGGTTGGCCTTCTTCCGCTTATTTCATTCAAGGTTCACTTCCATTGATGCAGGCCTTCGTTCCAAATAATAGTGATGGAGGAGCTCTTTATGGTGATGGCCCAATGCTACTACTCGAGGAGGGAGTCCATGAAGTGGAGGCGGCCAGTGAGCTTGGGGTGGATGATGTCGCTGATGGAGCCGAAGATAAGGATGAAGATAAGGATGTGGTTTCATGGAATGCTATAGTTACTGGGTATTCTCAGATTGTTAGATTTGAGAATGCTATTGGTTTATTTGAAAACATAAGGGAGGAGAAGATTGAGTTACATGTTGTCACTTGGGGTGCTATGATTTCAGGGCATGCACAAAGGGGACATGGTTACCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

130

Amino Acids

14.14

Weight (kDa)

4.24

Isoelectric Point (pI)

23.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 122	1.4e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016984)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0164601
rosa_laevigata	RLG00000016816
rosa_multiflora	Rmu_sc0001557.1_g000008 Rmu_sc0002489.1_g000013 Rmu_sc0002532.1_g000028 Rmu_sc0003710.1_g000006
rosa_roxburghii	Rroxscaffold_2G00087760 Rroxscaffold_4G00327750 Rroxscaffold_7G00160260
rosa_samantha	Rh3AG292100 Rh3BG329400 Rh3CG326500 Rh3DG325400 Rh7AG458700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	18, 154
AciI	CCGC	2 cut(s)	36, 161
AcoI	YGGCCR	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	18, 154
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	50, 299
AluBI	AGCT	2 cut(s)	104, 172
AluI	AGCT	2 cut(s)	104, 172
Alw21I	GWGCWC	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	4 cut(s)	26, 72, 118, 162
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	106
BccI	CCATC	3 cut(s)	89, 110, 188
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	199
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 154
Bse1I	ACTGG	2 cut(s)	165, 256
BseGI	GGATG	3 cut(s)	187, 217, 229
BseLI	CCNNNNNNNGG	2 cut(s)	18, 154
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	2 cut(s)	165, 256
BseRI	GAGGAG	3 cut(s)	114, 152, 326
BshFI	GGCC	4 cut(s)	28, 74, 120, 164
BsiHKAI	GWGCWC	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	2 cut(s)	18, 154
BsmFI	GGGAC	1 cut(s)	387
BsmI	GAATGC	2 cut(s)	244, 286
BsnI	GGCC	4 cut(s)	28, 74, 120, 164
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	36, 161
BspANI	GGCC	4 cut(s)	28, 74, 120, 164
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	165, 256
Bst4CI	ACNGT	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	72, 363
BstDEI	CTNAG	1 cut(s)	261
BstEII	GGTNACC	1 cut(s)	380
BstF5I	GGATG	3 cut(s)	187, 217, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	332, 365
BstPI	GGTNACC	1 cut(s)	380
BstSFI	CTRYAG	1 cut(s)	243
BsuRI	GGCC	4 cut(s)	28, 74, 120, 164
BtsCI	GGATG	3 cut(s)	187, 217, 229
BtsIMutI	CAGTG	2 cut(s)	12, 172
Cac8I	GCNNGC	2 cut(s)	72, 363
Cfr13I	GGNCC	1 cut(s)	119
CviAII	CATG	5 cut(s)	149, 234, 329, 362, 377
CviJI	RGCY	7 cut(s)	28, 74, 104, 120, 164, 172, 200
CviKI_1	RGCY	7 cut(s)	28, 74, 104, 120, 164, 172, 200
DdeI	CTNAG	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	104
Eco147I	AGGCCT	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	134
Eco91I	GGTNACC	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	380
EcoT38I	GRGCYC	1 cut(s)	106
FaeI	CATG	5 cut(s)	152, 237, 332, 365, 380
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	5 cut(s)	148, 233, 328, 361, 376
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	3 cut(s)	194, 224, 236
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	4 cut(s)	28, 74, 120, 164
Hin1II	CATG	5 cut(s)	152, 237, 332, 365, 380
HinfI	GANTC	1 cut(s)	144
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	264
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	39, 85
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	2 cut(s)	70, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	5 cut(s)	152, 237, 332, 365, 380
LmnI	GCTCC	2 cut(s)	101, 197
LpnPI	CCDG	4 cut(s)	56, 178, 237, 342
LweI	GCATC	1 cut(s)	57
MaeIII	GTNAC	4 cut(s)	247, 324, 334, 380
MboII	GAAGA	4 cut(s)	24, 215, 227, 328
MhlI	GDGCHC	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	153
MnlI	CCTC	5 cut(s)	92, 130, 133, 151, 304
Mva1269I	GAATGC	2 cut(s)	244, 286
MwoI	GCNNNNNNNGC	1 cut(s)	197
NlaIII	CATG	5 cut(s)	152, 237, 332, 365, 380
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	2 cut(s)	332, 365
PaeI	GCATGC	1 cut(s)	365
PaeR7I	CTCGAG	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	74
PciI	ACATGT	1 cut(s)	328
PctI	GAATGC	2 cut(s)	244, 286
PflMI	CCANNNNNTGG	2 cut(s)	18, 154
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PscI	ACATGT	1 cut(s)	328
Psp124BI	GAGCTC	1 cut(s)	106
PspEI	GGTNACC	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	119
PspXI	VCTCGAGB	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	106
SatI	GCNGC	1 cut(s)	162
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	3 cut(s)	55, 106, 174
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	243
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	365
SseBI	AGGCCT	1 cut(s)	74
SsiI	CCGC	2 cut(s)	36, 161
SstI	GAGCTC	1 cut(s)	106
StuI	AGGCCT	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	5, 135
TauI	GCSGC	1 cut(s)	164
TscAI	CASTG	2 cut(s)	19, 172
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	4 cut(s)	34, 165, 222, 228
TspRI	CASTG	2 cut(s)	19, 172
Van91I	CCANNNNNTGG	2 cut(s)	18, 154
XceI	RCATGY	2 cut(s)	332, 365
XhoI	CTCGAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.