Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016984

Physical Location & Seq

Genomic Coordinates Reverse (-)

35550321 .. 35550734

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG326500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGTGCAGAGTGATGGAGGAGCTCTTTATGGTGATGGCCCAATGCTACTACTCGAGGAGGGAGTCCATGAAGTGGAGGCGGCCGGTGAGCTTGGGGTGGATGATGTCGCTGATGGAGCCGAAGATAAGGTGGTAGCTCGTAAAGCATTCTCAACCATTAATTCGTGGACGGATGAAGATAAGGATGTGGTTTCATGGAATGCTATAGTTACTGGGTATTCTCAGATTGTTAGATTTGAGAATGCTATTGGTTTATTTGAAAACATAAGGGAGGAGAAGATTGAGTTACATGTTGTCACTTGGGGTGCTATGATTTCAGGGCATGCACAAAGGGGACATGGTTACCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

117

Amino Acids

12.69

Weight (kDa)

4.41

Isoelectric Point (pI)

14.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	61 - 109	1.1e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016984)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0164601
rosa_laevigata	RLG00000016816
rosa_multiflora	Rmu_sc0001557.1_g000008 Rmu_sc0002489.1_g000013 Rmu_sc0002532.1_g000028 Rmu_sc0003710.1_g000006
rosa_roxburghii	Rroxscaffold_2G00087760 Rroxscaffold_4G00327750 Rroxscaffold_7G00160260
rosa_samantha	Rh3AG292100 Rh3BG329400 Rh3CG326500 Rh3DG325400 Rh7AG458700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	73
AciI	CCGC	1 cut(s)	80
AcoI	YGGCCR	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	260
AluBI	AGCT	3 cut(s)	23, 91, 137
AluI	AGCT	3 cut(s)	23, 91, 137
Alw21I	GWGCWC	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	37, 81
AseI	ATTAAT	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	44, 98
AvaI	CYCGRG	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BccI	CCATC	3 cut(s)	8, 29, 107
BfmI	CTRYAG	1 cut(s)	204
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	217
BseGI	GGATG	3 cut(s)	106, 178, 190
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	3 cut(s)	33, 71, 287
BseX3I	CGGCCG	1 cut(s)	81
BsgI	GTGCAG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	39, 83
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	3 cut(s)	146, 205, 247
BsnI	GGCC	2 cut(s)	39, 83
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	2 cut(s)	39, 83
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	3 cut(s)	106, 178, 190
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 143
BstNSI	RCATGY	2 cut(s)	293, 326
BstPI	GGTNACC	1 cut(s)	341
BstSFI	CTRYAG	1 cut(s)	204
BstZI	CGGCCG	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	39, 83
BtsCI	GGATG	3 cut(s)	106, 178, 190
Cac8I	GCNNGC	1 cut(s)	324
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	38
CviAII	CATG	5 cut(s)	68, 195, 290, 323, 338
CviJI	RGCY	6 cut(s)	23, 39, 83, 91, 119, 137
CviKI_1	RGCY	6 cut(s)	23, 39, 83, 91, 119, 137
DdeI	CTNAG	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	81
EagI	CGGCCG	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	23
EclXI	CGGCCG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	25
Eco52I	CGGCCG	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	53
Eco91I	GGTNACC	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	5 cut(s)	71, 198, 293, 326, 341
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	5 cut(s)	67, 194, 289, 322, 337
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	3 cut(s)	113, 185, 197
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	39, 83
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	5 cut(s)	71, 198, 293, 326, 341
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	2 cut(s)	44, 98
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	225
Hpy8I	GTNNAC	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	7, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 143
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	5 cut(s)	71, 198, 293, 326, 341
LmnI	GCTCC	2 cut(s)	20, 116
LpnPI	CCDG	3 cut(s)	97, 198, 303
MaeIII	GTNAC	4 cut(s)	208, 285, 295, 341
MboII	GAAGA	3 cut(s)	134, 188, 289
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	5 cut(s)	11, 49, 52, 70, 265
MseI	TTAA	1 cut(s)	159
MspI	CCGG	1 cut(s)	84
Mva1269I	GAATGC	3 cut(s)	146, 205, 247
MwoI	GCNNNNNNNGC	2 cut(s)	116, 143
NlaIII	CATG	5 cut(s)	71, 198, 293, 326, 341
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	2 cut(s)	293, 326
PaeI	GCATGC	1 cut(s)	326
PaeR7I	CTCGAG	1 cut(s)	53
PciI	ACATGT	1 cut(s)	289
PctI	GAATGC	3 cut(s)	146, 205, 247
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PscI	ACATGT	1 cut(s)	289
PshBI	ATTAAT	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	25
PspEI	GGTNACC	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	38
PspXI	VCTCGAGB	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	4 cut(s)	25, 93, 132, 139
SfcI	CTRYAG	1 cut(s)	204
Sfr274I	CTCGAG	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	25
TaqI	TCGA	1 cut(s)	54
TasI	AATT	1 cut(s)	160
TauI	GCSGC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	84, 183, 189
TspGWI	ACGGA	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	159
XceI	RCATGY	2 cut(s)	293, 326
XhoI	CTCGAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.