Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003710.1

Orthogroup ID

OG0016984

Physical Location & Seq

Genomic Coordinates Reverse (-)

23401 .. 26641

Gene Structure 3241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003710.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgagttgtaggcgacggagaccggtgggatccggtgacggagcggtcgctgtggttgatggaggagctcttgatggcccgtcactgctactcgaggagggagtccatgaagtggaggcggccggtgagcttggggtggatgatgccgctgacggagccggagataaggatgaagataaggatgtggtttcatggaatgctatggttactggttattctcagattgttagatttgagaatgctattagtttaattaaaaagataagggagtggaagattgagttaaatgttgtcaactggagaatgatggctttgcatggatgtgtttcggtaaatgattgcttgtggcttagagccatatgtttcttttatgcctccacctcacacattgaagaactcgatcccaggagtccagaaccggcggccccaccccaagaaccggccgaaaacccattgaaccggccaccggaagctccaccggttcaccatcttccggaccttcaatttcaaccaaattttgaaaagaaagaagaagaaaagaaaagaaaaaaaagggaaaggaaaagaagcttagaagcccaaggcagaggcccactgccacgtcagcagaagaacccacaaccacgtcattacagggacccactgccacgtcagcatcaatgccacgtcagccttccagtcaacgcccgccaggatgtgctaactgttgagcaagctcaagctttggaagccaatagagcagccttagagacaaataaggcgaaagccatcatcctaatgacttgtcatatggatgatccactccagtacgagtgtatgaatgaagaagaccccagaaggctgtgggtctcactcgatgaaagatttgtcaacgtccgtgactccctgcttcctgacctagaagtgagatggcatagcctctgcttctgtgatttcaagtcagttcttgactacaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

319

Amino Acids

36.28

Weight (kDa)

5.56

Isoelectric Point (pI)

65.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016984)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0164601
rosa_laevigata	RLG00000016816
rosa_multiflora	Rmu_sc0001557.1_g000008 Rmu_sc0002489.1_g000013 Rmu_sc0002532.1_g000028 Rmu_sc0003710.1_g000006
rosa_roxburghii	Rroxscaffold_2G00087760 Rroxscaffold_4G00327750 Rroxscaffold_7G00160260
rosa_samantha	Rh3AG292100 Rh3BG329400 Rh3CG326500 Rh3DG325400 Rh7AG458700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccBSI	CCGCTC	1 cut(s)	44
AccIII	TCCGGA	1 cut(s)	493
AciI	CCGC	5 cut(s)	44, 119, 147, 422, 688
AclWI	GGATC	4 cut(s)	24, 37, 395, 791
AcoI	YGGCCR	3 cut(s)	120, 441, 461
AcsI	RAATTY	1 cut(s)	514
AfaI	GTAC	1 cut(s)	809
AfiI	CCNNNNNNNGG	4 cut(s)	112, 439, 466, 493
AgeI	ACCGGT	2 cut(s)	22, 478
AgsI	TTSAA	6 cut(s)	392, 457, 503, 509, 521, 937
AjiI	CACGTC	4 cut(s)	602, 626, 650, 667
AjnI	CCWGG	2 cut(s)	404, 690
AluBI	AGCT	6 cut(s)	68, 130, 473, 570, 716, 722
AluI	AGCT	6 cut(s)	68, 130, 473, 570, 716, 722
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	3 cut(s)	13, 743, 853
AlwI	GGATC	4 cut(s)	24, 37, 395, 791
Ama87I	CYCGRG	1 cut(s)	92
Aor13HI	TCCGGA	1 cut(s)	493
AoxI	GGCC	6 cut(s)	76, 120, 423, 441, 461, 589
ApeKI	GCWGC	1 cut(s)	740
ApoI	RAATTY	1 cut(s)	514
AsiGI	ACCGGT	2 cut(s)	22, 478
AspS9I	GGNCC	5 cut(s)	77, 424, 496, 590, 637
AsuHPI	GGTGA	3 cut(s)	47, 137, 476
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	2 cut(s)	496, 637
BamHI	GGATCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	834
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	752
BccI	CCATC	6 cut(s)	53, 68, 301, 495, 776, 903
BciT130I	CCWGG	2 cut(s)	406, 692
BcoDI	GTCTC	3 cut(s)	13, 743, 853
BfaI	CTAG	2 cut(s)	899, 958
BisI	GCNGC	4 cut(s)	120, 147, 423, 741
BlsI	GCNGC	4 cut(s)	121, 148, 424, 742
Bme1390I	CCNGG	2 cut(s)	406, 692
Bme18I	GGWCC	2 cut(s)	496, 637
BmeT110I	CYCGRG	1 cut(s)	92
BmgBI	CACGTC	4 cut(s)	602, 626, 650, 667
BmgT120I	GGNCC	5 cut(s)	77, 424, 496, 590, 637
BmiI	GGNNCC	5 cut(s)	31, 157, 426, 638, 639
BmrFI	CCNGG	2 cut(s)	406, 692
BmsI	GCATC	2 cut(s)	133, 664
BpiI	GAAGAC	1 cut(s)	834
BpmI	CTGGAG	2 cut(s)	319, 788
BpuEI	CTTGAG	1 cut(s)	702
BsaI	GGTCTC	2 cut(s)	13, 853
BsaJI	CCNNGG	2 cut(s)	404, 580
BsaWI	WCCGGW	5 cut(s)	22, 32, 466, 478, 493
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 439, 466, 493
Bse118I	RCCGGY	6 cut(s)	22, 122, 418, 439, 459, 478
Bse1I	ACTGG	4 cut(s)	214, 302, 677, 805
BseAI	TCCGGA	1 cut(s)	493
BseBI	CCWGG	2 cut(s)	406, 692
BseDI	CCNNGG	2 cut(s)	404, 580
BseGI	GGATG	7 cut(s)	145, 175, 187, 326, 700, 771, 799
BseLI	CCNNNNNNNGG	4 cut(s)	112, 439, 466, 493
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	4 cut(s)	214, 302, 677, 805
BseRI	GAGGAG	2 cut(s)	78, 110
BseX3I	CGGCCG	2 cut(s)	120, 441
BseXI	GCAGC	1 cut(s)	752
Bsh1285I	CGRYCG	3 cut(s)	48, 123, 444
BshFI	GGCC	6 cut(s)	78, 122, 425, 443, 463, 591
BshTI	ACCGGT	2 cut(s)	22, 478
BsiEI	CGRYCG	3 cut(s)	48, 123, 444
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	4 cut(s)	112, 439, 466, 493
BsmAI	GTCTC	3 cut(s)	13, 743, 853
BsmFI	GGGAC	1 cut(s)	650
BsmI	GAATGC	2 cut(s)	202, 244
BsnI	GGCC	6 cut(s)	78, 122, 425, 443, 463, 591
Bso31I	GGTCTC	2 cut(s)	13, 853
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp13I	TCCGGA	1 cut(s)	493
Bsp143I	GATC	3 cut(s)	29, 400, 796
BspACI	CCGC	5 cut(s)	44, 119, 147, 422, 688
BspANI	GGCC	6 cut(s)	78, 122, 425, 443, 463, 591
BspCNI	CTCAG	1 cut(s)	232
BspEI	TCCGGA	1 cut(s)	493
BspLI	GGNNCC	5 cut(s)	31, 157, 426, 638, 639
BspPI	GGATC	4 cut(s)	24, 37, 395, 791
BspTNI	GGTCTC	2 cut(s)	13, 853
BsrBI	CCGCTC	1 cut(s)	44
BsrFI	RCCGGY	6 cut(s)	22, 122, 418, 439, 459, 478
BsrI	ACTGG	4 cut(s)	214, 302, 677, 805
BssAI	RCCGGY	6 cut(s)	22, 122, 418, 439, 459, 478
BssECI	CCNNGG	2 cut(s)	404, 580
BssMI	GATC	3 cut(s)	29, 400, 796
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	2 cut(s)	406, 692
Bst4CI	ACNGT	1 cut(s)	706
BstC8I	GCNNGC	2 cut(s)	688, 714
BstDEI	CTNAG	4 cut(s)	219, 350, 571, 745
BstF5I	GGATG	7 cut(s)	145, 175, 187, 326, 700, 771, 799
BstKTI	GATC	3 cut(s)	32, 403, 799
BstMAI	GTCTC	3 cut(s)	13, 743, 853
BstMBI	GATC	3 cut(s)	29, 400, 796
BstMCI	CGRYCG	3 cut(s)	48, 123, 444
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 604, 652, 669, 728, 737
BstNI	CCWGG	2 cut(s)	406, 692
BstSCI	CCNGG	2 cut(s)	404, 690
BstV1I	GCAGC	1 cut(s)	752
BstV2I	GAAGAC	1 cut(s)	834
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BstZI	CGGCCG	2 cut(s)	120, 441
BsuRI	GGCC	6 cut(s)	78, 122, 425, 443, 463, 591
BtrI	CACGTC	4 cut(s)	602, 626, 650, 667
BtsCI	GGATG	7 cut(s)	145, 175, 187, 326, 700, 771, 799
BtsI	GCAGTG	3 cut(s)	83, 593, 641
BtsIMutI	CAGTG	3 cut(s)	83, 593, 641
Cac8I	GCNNGC	2 cut(s)	688, 714
Cfr10I	RCCGGY	6 cut(s)	22, 122, 418, 439, 459, 478
Cfr13I	GGNCC	5 cut(s)	77, 424, 496, 590, 637
Csp6I	GTAC	1 cut(s)	808
CspAI	ACCGGT	2 cut(s)	22, 478
CviAII	CATG	3 cut(s)	107, 192, 317
CviQI	GTAC	1 cut(s)	808
DdeI	CTNAG	4 cut(s)	219, 350, 571, 745
DpnI	GATC	3 cut(s)	31, 402, 798
DpnII	GATC	3 cut(s)	29, 400, 796
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	3 cut(s)	120, 441, 461
EagI	CGGCCG	2 cut(s)	120, 441
Ecl136II	GAGCTC	1 cut(s)	68
EclXI	CGGCCG	2 cut(s)	120, 441
Eco130I	CCWWGG	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	2 cut(s)	13, 853
Eco47I	GGWCC	2 cut(s)	496, 637
Eco52I	CGGCCG	2 cut(s)	120, 441
Eco53kI	GAGCTC	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	637
EcoRII	CCWGG	2 cut(s)	404, 690
EcoT14I	CCWWGG	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	3 cut(s)	110, 195, 320
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	3 cut(s)	106, 191, 316
FauI	CCCGC	1 cut(s)	695
FauNDI	CATATG	2 cut(s)	359, 789
Fnu4HI	GCNGC	4 cut(s)	120, 147, 423, 741
FokI	GGATG	7 cut(s)	152, 182, 194, 333, 707, 758, 806
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	4 cut(s)	120, 147, 423, 741
FspBI	CTAG	2 cut(s)	899, 958
GluI	GCNGC	4 cut(s)	120, 147, 423, 741
GsuI	CTGGAG	2 cut(s)	319, 788
HaeIII	GGCC	6 cut(s)	78, 122, 425, 443, 463, 591
Hin1II	CATG	3 cut(s)	110, 195, 320
HincII	GTYRAC	3 cut(s)	295, 682, 871
HindII	GTYRAC	3 cut(s)	295, 682, 871
HindIII	AAGCTT	2 cut(s)	568, 720
HinfI	GANTC	3 cut(s)	102, 409, 881
HphI	GGTGA	3 cut(s)	47, 137, 476
Hpy166II	GTNNAC	4 cut(s)	295, 484, 682, 871
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	5 cut(s)	71, 413, 494, 893, 947
Hpy8I	GTNNAC	4 cut(s)	295, 484, 682, 871
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	3 cut(s)	509, 683, 831
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	5 cut(s)	601, 625, 649, 666, 873
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 604, 652, 669, 728, 737
HpyF3I	CTNAG	4 cut(s)	219, 350, 571, 745
HpySE526I	ACGT	5 cut(s)	601, 625, 649, 666, 873
Hsp92II	CATG	3 cut(s)	110, 195, 320
KflI	GGGWCCC	1 cut(s)	637
Kpn2I	TCCGGA	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	29, 400, 796
LmnI	GCTCC	4 cut(s)	41, 65, 155, 478
Lsp1109I	GCAGC	1 cut(s)	752
LweI	GCATC	2 cut(s)	133, 664
MaeI	CTAG	2 cut(s)	899, 958
MaeII	ACGT	5 cut(s)	601, 625, 649, 666, 873
MaeIII	GTNAC	4 cut(s)	35, 81, 205, 878
MalI	GATC	3 cut(s)	31, 402, 798
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	3 cut(s)	29, 400, 796
MboII	GAAGA	9 cut(s)	185, 286, 404, 482, 542, 545, 622, 836, 839
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	3 cut(s)	252, 503, 514
MlyI	GAGTC	3 cut(s)	111, 418, 875
MnlI	CCTC	8 cut(s)	56, 88, 91, 109, 385, 391, 581, 929
MroI	TCCGGA	1 cut(s)	493
MseI	TTAA	3 cut(s)	251, 255, 284
MslI	CAYNNNNRTG	3 cut(s)	321, 776, 792
MspA1I	CMGCKG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	406, 692
Mva1269I	GAATGC	2 cut(s)	202, 244
MvaI	CCWGG	2 cut(s)	406, 692
MwoI	GCNNNNNNNGC	6 cut(s)	155, 604, 652, 669, 728, 737
NdeI	CATATG	2 cut(s)	359, 789
NdeII	GATC	3 cut(s)	29, 400, 796
NlaIII	CATG	3 cut(s)	110, 195, 320
NlaIV	GGNNCC	5 cut(s)	31, 157, 426, 638, 639
NmuCI	GTSAC	3 cut(s)	35, 81, 878
PacI	TTAATTAA	1 cut(s)	255
PaeR7I	CTCGAG	1 cut(s)	92
PctI	GAATGC	2 cut(s)	202, 244
PflMI	CCANNNNNTGG	1 cut(s)	112
PinAI	ACCGGT	2 cut(s)	22, 478
PkrI	GCNGC	4 cut(s)	121, 148, 424, 742
PleI	GAGTC	3 cut(s)	110, 417, 875
PpsI	GAGTC	3 cut(s)	110, 417, 875
PpuMI	RGGWCCY	1 cut(s)	637
Psp124BI	GAGCTC	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	2 cut(s)	404, 690
PspGI	CCWGG	2 cut(s)	404, 690
PspN4I	GGNNCC	5 cut(s)	31, 157, 426, 638, 639
PspPI	GGNCC	5 cut(s)	77, 424, 496, 590, 637
PspPPI	RGGWCCY	1 cut(s)	637
PspXI	VCTCGAGB	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
RseI	CAYNNNNRTG	3 cut(s)	321, 776, 792
SacI	GAGCTC	1 cut(s)	70
SaqAI	TTAA	3 cut(s)	251, 255, 284
SatI	GCNGC	4 cut(s)	120, 147, 423, 741
Sau3AI	GATC	3 cut(s)	29, 400, 796
Sau96I	GGNCC	5 cut(s)	77, 424, 496, 590, 637
SchI	GAGTC	3 cut(s)	111, 418, 875
ScrFI	CCNGG	2 cut(s)	406, 692
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	2 cut(s)	133, 664
Sfr274I	CTCGAG	1 cut(s)	92
SinI	GGWCC	2 cut(s)	496, 637
SlaI	CTCGAG	1 cut(s)	92
SmiMI	CAYNNNNRTG	3 cut(s)	321, 776, 792
SmlI	CTYRAG	2 cut(s)	92, 717
SmoI	CTYRAG	2 cut(s)	92, 717
Sse9I	AATT	3 cut(s)	252, 503, 514
SsiI	CCGC	5 cut(s)	44, 119, 147, 422, 688
SspMI	CTAG	2 cut(s)	899, 958
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	2 cut(s)	404, 690
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	5 cut(s)	604, 628, 652, 669, 876
TaqI	TCGA	3 cut(s)	93, 399, 855
TasI	AATT	3 cut(s)	252, 503, 514
TauI	GCSGC	3 cut(s)	122, 149, 425
Tru1I	TTAA	3 cut(s)	251, 255, 284
Tru9I	TTAA	3 cut(s)	251, 255, 284
TscAI	CASTG	3 cut(s)	90, 600, 648
TseFI	GTSAC	3 cut(s)	35, 81, 878
TseI	GCWGC	1 cut(s)	740
Tsp45I	GTSAC	3 cut(s)	35, 81, 878
TspDTI	ATGAA	6 cut(s)	123, 180, 186, 833, 837, 873
TspGWI	ACGGA	4 cut(s)	31, 54, 168, 866
TspRI	CASTG	3 cut(s)	90, 600, 648
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	496, 637
XapI	RAATTY	1 cut(s)	514
XhoI	CTCGAG	1 cut(s)	92
XspI	CTAG	2 cut(s)	899, 958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.