Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001557.1

Orthogroup ID

OG0016984

Physical Location & Seq

Genomic Coordinates Forward (+)

30948 .. 36096

Gene Structure 5149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001557.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggttgaagccttttctgccctagaggccatggttgatgccaaaactcttgctggtattaagtgttggtgcatgcagcttctgagatctgaagagccctttcttggccatagttgcgctgcgacattgttgtccttagttcttgaccgttatgcggtctgtgataacaattttttggtttctggggggtggcttggtcaacaacgtcatgagttgttggcgacggagaccggtgggaatgtgggatccggtgacggagtggtcgttgtggttgatggaagagctcttgatggcccgtcactgctactcgaggagggagtccatgaagtggaggcggccggtgagcttgcagtggatgatgccgctgacggagccggagataaggatgaagataaggatgtggtttcatggaatgctatggttactggttattctcagattgttagatttgagaatgctattagtttatttgaaaagataagggagtggaagattgagttaaatgttgtcaactggagaatgatggctttgcatggatgtgtttcgggcactgcctctgtccaccatcagcttagggctggcgtagtccatatccatcacggcatggatagcgtccatcatggtgatggctccccaggtgatgttgcaatcaccaacttgcttcacatagcgtttcgaacgctcaggcctaaccaaaatacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

234

Amino Acids

25.22

Weight (kDa)

5.0

Isoelectric Point (pI)

29.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016984)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0164601
rosa_laevigata	RLG00000016816
rosa_multiflora	Rmu_sc0001557.1_g000008 Rmu_sc0002489.1_g000013 Rmu_sc0002532.1_g000028 Rmu_sc0003710.1_g000006
rosa_roxburghii	Rroxscaffold_2G00087760 Rroxscaffold_4G00327750 Rroxscaffold_7G00160260
rosa_samantha	Rh3AG292100 Rh3BG329400 Rh3CG326500 Rh3DG325400 Rh7AG458700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	130, 260
AccB7I	CCANNNNNTGG	1 cut(s)	328
AciI	CCGC	3 cut(s)	155, 335, 363
AclWI	GGATC	2 cut(s)	240, 253
AcoI	YGGCCR	2 cut(s)	106, 336
AcuI	CTGAAG	1 cut(s)	111
AfiI	CCNNNNNNNGG	3 cut(s)	104, 154, 328
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	8, 473
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	4 cut(s)	79, 284, 346, 571
AluI	AGCT	4 cut(s)	79, 284, 346, 571
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	240, 253
AlwNI	CAGNNNCTG	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	5 cut(s)	27, 106, 292, 336, 686
ApeKI	GCWGC	2 cut(s)	76, 119
AsiGI	ACCGGT	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	5 cut(s)	263, 353, 635, 643, 650
AsuII	TTCGAA	1 cut(s)	676
AvaI	CYCGRG	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	551
BalI	TGGCCA	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	245
BanII	GRGCYC	2 cut(s)	99, 286
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	88, 106
BccI	CCATC	7 cut(s)	269, 284, 517, 573, 603, 620, 624
BceAI	ACGGC	1 cut(s)	616
BciT130I	CCWGG	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	26
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	4 cut(s)	77, 120, 336, 363
BlsI	GCNGC	4 cut(s)	78, 121, 337, 364
Bme1390I	CCNGG	1 cut(s)	636
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	3 cut(s)	247, 373, 631
BmrFI	CCNGG	1 cut(s)	636
BmsI	GCATC	2 cut(s)	28, 349
BpmI	CTGGAG	1 cut(s)	535
Bpu10I	CCTNAGC	2 cut(s)	572, 683
Bpu14I	TTCGAA	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	30, 634
BsaWI	WCCGGW	2 cut(s)	230, 248
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 154, 328
Bse118I	RCCGGY	2 cut(s)	230, 338
Bse1I	ACTGG	2 cut(s)	430, 518
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	30, 634
BseGI	GGATG	4 cut(s)	361, 391, 403, 542
BseLI	CCNNNNNNNGG	3 cut(s)	104, 154, 328
BseMII	CTCAG	3 cut(s)	74, 449, 697
BseNI	ACTGG	2 cut(s)	430, 518
BseRI	GAGGAG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	551
BseX3I	CGGCCG	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	88, 106
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	5 cut(s)	29, 108, 294, 338, 688
BshTI	ACCGGT	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	286
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	4 cut(s)	231, 249, 339, 375
BslI	CCNNNNNNNGG	3 cut(s)	104, 154, 328
BsmAI	GTCTC	1 cut(s)	221
BsmI	GAATGC	2 cut(s)	418, 460
BsnI	GGCC	5 cut(s)	29, 108, 294, 338, 688
Bso31I	GGTCTC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	308
Bsp119I	TTCGAA	1 cut(s)	676
Bsp1286I	GDGCHC	3 cut(s)	99, 286, 551
Bsp143I	GATC	2 cut(s)	86, 245
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	3 cut(s)	155, 335, 363
BspANI	GGCC	5 cut(s)	29, 108, 294, 338, 688
BspCNI	CTCAG	3 cut(s)	75, 448, 696
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	247, 373, 631
BspPI	GGATC	2 cut(s)	240, 253
BspQI	GCTCTTC	2 cut(s)	87, 274
BspT104I	TTCGAA	1 cut(s)	676
BspTNI	GGTCTC	1 cut(s)	221
BsrFI	RCCGGY	2 cut(s)	230, 338
BsrI	ACTGG	2 cut(s)	430, 518
BssAI	RCCGGY	2 cut(s)	230, 338
BssECI	CCNNGG	2 cut(s)	30, 634
BssMI	GATC	2 cut(s)	86, 245
BssT1I	CCWWGG	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	2 cut(s)	87, 274
BstBI	TTCGAA	1 cut(s)	676
BstC8I	GCNNGC	3 cut(s)	74, 348, 580
BstDEI	CTNAG	5 cut(s)	83, 136, 435, 572, 683
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	4 cut(s)	361, 391, 403, 542
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	2 cut(s)	89, 248
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	2 cut(s)	86, 245
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 26, 114, 371, 609
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	634
BstSLI	GKGCMC	1 cut(s)	551
BstV1I	GCAGC	2 cut(s)	88, 106
BstX2I	RGATCY	2 cut(s)	86, 245
BstYI	RGATCY	2 cut(s)	86, 245
BstZI	CGGCCG	1 cut(s)	336
BsuRI	GGCC	5 cut(s)	29, 108, 294, 338, 688
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	4 cut(s)	361, 391, 403, 542
BtsI	GCAGTG	3 cut(s)	299, 357, 549
BtsIMutI	CAGTG	3 cut(s)	299, 357, 549
Cac8I	GCNNGC	3 cut(s)	74, 348, 580
CaiI	CAGNNNCTG	1 cut(s)	82
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	2 cut(s)	230, 338
Cfr13I	GGNCC	1 cut(s)	293
CseI	GACGC	1 cut(s)	601
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	8 cut(s)	31, 73, 209, 323, 408, 533, 604, 620
DdeI	CTNAG	5 cut(s)	83, 136, 435, 572, 683
DpnI	GATC	2 cut(s)	88, 247
DpnII	GATC	2 cut(s)	86, 245
DrdI	GACNNNNNNGTC	2 cut(s)	130, 260
DseDI	GACNNNNNNGTC	2 cut(s)	130, 260
EaeI	YGGCCR	2 cut(s)	106, 336
EagI	CGGCCG	1 cut(s)	336
Eam1104I	CTCTTC	2 cut(s)	87, 274
EarI	CTCTTC	2 cut(s)	87, 274
Ecl136II	GAGCTC	1 cut(s)	284
EclXI	CGGCCG	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	30
Eco147I	AGGCCT	1 cut(s)	688
Eco24I	GRGCYC	2 cut(s)	99, 286
Eco31I	GGTCTC	1 cut(s)	221
Eco52I	CGGCCG	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	634
EcoT14I	CCWWGG	1 cut(s)	30
EcoT38I	GRGCYC	2 cut(s)	99, 286
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	8 cut(s)	34, 76, 212, 326, 411, 536, 607, 623
FatI	CATG	8 cut(s)	30, 72, 208, 322, 407, 532, 603, 619
Fnu4HI	GCNGC	4 cut(s)	77, 120, 336, 363
FokI	GGATG	4 cut(s)	368, 398, 410, 549
FriOI	GRGCYC	2 cut(s)	99, 286
Fsp4HI	GCNGC	4 cut(s)	77, 120, 336, 363
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	4 cut(s)	77, 120, 336, 363
GsuI	CTGGAG	1 cut(s)	535
HaeIII	GGCC	5 cut(s)	29, 108, 294, 338, 688
HapII	CCGG	4 cut(s)	231, 249, 339, 375
HgaI	GACGC	1 cut(s)	601
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	8 cut(s)	34, 76, 212, 326, 411, 536, 607, 623
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	2 cut(s)	200, 511
HindII	GTYRAC	2 cut(s)	200, 511
HinfI	GANTC	1 cut(s)	318
HpaII	CCGG	4 cut(s)	231, 249, 339, 375
HphI	GGTGA	5 cut(s)	263, 353, 635, 643, 650
Hpy166II	GTNNAC	3 cut(s)	200, 511, 562
Hpy188I	TCNGA	3 cut(s)	84, 91, 438
Hpy188III	TCNNGA	3 cut(s)	143, 209, 287
Hpy8I	GTNNAC	3 cut(s)	200, 511, 562
Hpy99I	CGWCG	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	5 cut(s)	72, 76, 350, 532, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 26, 114, 371, 609
HpyF3I	CTNAG	5 cut(s)	83, 136, 435, 572, 683
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	8 cut(s)	34, 76, 212, 326, 411, 536, 607, 623
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	86, 245
LguI	GCTCTTC	2 cut(s)	87, 274
LmnI	GCTCC	2 cut(s)	371, 635
Lsp1109I	GCAGC	2 cut(s)	88, 106
LweI	GCATC	2 cut(s)	28, 349
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	3 cut(s)	251, 297, 421
MalI	GATC	2 cut(s)	88, 247
MboI	GATC	2 cut(s)	86, 245
MboII	GAAGA	4 cut(s)	104, 291, 401, 502
MflI	RGATCY	2 cut(s)	86, 245
MhlI	GDGCHC	3 cut(s)	99, 286, 551
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	1 cut(s)	169
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	327
MnlI	CCTC	5 cut(s)	19, 304, 307, 325, 565
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	3 cut(s)	60, 500, 703
MslI	CAYNNNNRTG	3 cut(s)	537, 621, 624
Msp20I	TGGCCA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	4 cut(s)	231, 249, 339, 375
MspR9I	CCNGG	1 cut(s)	636
Mva1269I	GAATGC	2 cut(s)	418, 460
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	5 cut(s)	17, 26, 114, 371, 609
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	2 cut(s)	86, 245
NlaIII	CATG	8 cut(s)	34, 76, 212, 326, 411, 536, 607, 623
NlaIV	GGNNCC	3 cut(s)	247, 373, 631
NmuCI	GTSAC	2 cut(s)	251, 297
NspI	RCATGY	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	676
PaeI	GCATGC	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	308
PagI	TCATGA	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	688
PciSI	GCTCTTC	2 cut(s)	87, 274
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PctI	GAATGC	2 cut(s)	418, 460
PflMI	CCANNNNNTGG	1 cut(s)	328
PinAI	ACCGGT	1 cut(s)	230
PkrI	GCNGC	4 cut(s)	78, 121, 337, 364
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Psp124BI	GAGCTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	3 cut(s)	247, 373, 631
PspPI	GGNCC	1 cut(s)	293
PspXI	VCTCGAGB	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	86, 245
RseI	CAYNNNNRTG	3 cut(s)	537, 621, 624
SacI	GAGCTC	1 cut(s)	286
SapI	GCTCTTC	2 cut(s)	87, 274
SaqAI	TTAA	3 cut(s)	60, 500, 703
SatI	GCNGC	4 cut(s)	77, 120, 336, 363
Sau3AI	GATC	2 cut(s)	86, 245
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	327
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	3 cut(s)	99, 286, 551
SetI	ASST	6 cut(s)	81, 208, 286, 348, 573, 640
SfaNI	GCATC	2 cut(s)	28, 349
Sfr274I	CTCGAG	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	676
SlaI	CTCGAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	3 cut(s)	537, 621, 624
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SphI	GCATGC	1 cut(s)	76
Sse9I	AATT	1 cut(s)	169
SseBI	AGGCCT	1 cut(s)	688
SsiI	CCGC	3 cut(s)	155, 335, 363
SspMI	CTAG	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	286
StuI	AGGCCT	1 cut(s)	688
StyD4I	CCNGG	1 cut(s)	634
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	2 cut(s)	309, 676
TasI	AATT	1 cut(s)	169
TauI	GCSGC	2 cut(s)	338, 365
Tru1I	TTAA	3 cut(s)	60, 500, 703
Tru9I	TTAA	3 cut(s)	60, 500, 703
TscAI	CASTG	3 cut(s)	306, 357, 556
TseFI	GTSAC	2 cut(s)	251, 297
TseI	GCWGC	2 cut(s)	76, 119
Tsp45I	GTSAC	2 cut(s)	251, 297
TspDTI	ATGAA	3 cut(s)	339, 396, 402
TspGWI	ACGGA	3 cut(s)	239, 270, 384
TspRI	CASTG	3 cut(s)	306, 357, 556
Van91I	CCANNNNNTGG	1 cut(s)	328
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	623
XhoI	CTCGAG	1 cut(s)	308
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.