Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005238

Physical Location & Seq

Genomic Coordinates Forward (+)

63204225 .. 63213258

Gene Structure 9034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020280

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5448 bp

ATGGCTGCCCCCAATAAGTTTTTTTCTCAGTTTATTTCCATTGTGAAATCATGGATCCCTTGGCGATCTGAGCCGGCTAATGTTTCAAGGGATTTTTGGATGCCTGATGATAGCTGTAGGGTATGTTATGAGTGTGATGCACAGTTCACTGTATTTAACCGTAAACATCATTGTCGACTTTGTGGACGAGTTTTCTGCGCCAAGTGTACAGAAAACTCAATTCCTGCCCCCTCTGGTGACTCAAGGATAGATCGGGAAGAGAGGGAAAGGATTCGTGTCTGCAATTTTTGTTATAAGCAACATCAGCAAGGCATTGCTGCTACTCCTGATAATGGAACACAGATTGCTAATCTAGATCTTAGTACCTCACCATCAGAAACAAGTTTTACTAGCTTTAAGTCATGCGGCACTGGTAACAGCAGTAGCTTTACTCTTAACTCAATCCCGTACTCAACTGGGCCATACCAACGACCTCAAAACAGTTCTGGTCTTAGCCCCTGTCAATCATCTCCCATGAAAACAAGCTCAGAAAAGCACAGCAAATATGCCTCCTGGAGGACCAATGATTTTGTTGCAGATATAGGGGATTCATCTCCAAATCATTATGAGATTTCAACAACCAGGAGTGATGACGACGATGTTGACTATGGGACATATCAGTCAGATTCTAAGAATTATTCTCAAGTCAATGATTACTATGGTCATGTTGAGTTTTATGAGATGAGCAATCATGATGAATCACATGAGGTGCAACTTGGTGGTGAAAACATTGATGCAAAGCATTTAAGCAGCTCCCCGTTACTTCACAGTTTTAACTCGCAGGGTTCGGATCCACCACTTGAAAAGAAAGAAGATGAACATGATATGGGTGATGAATGTGCTTCCTCTTTATGTTCTGCAGGGGATGTTGACGTAGAACCTGTGGATTTTGAGAACAATGCCCTTCTTTGGCTTCCCCCTGAACCAGAAGATGAAGAAGATGAAAGGGAAACTGTTCTTCTTGATGATGACGATGATGGTGATGCTGCAGGAGAGTGGGGAACCTTACGCACATCAAGCAGTTTTGGCAGCGGGGAGTCTCGCAATAGGGAACGATCAGGTGAGGAGCATAAGAAGGTGATGAAAAATGTGGTTGATGGGCACTTTAGGGCTTTGGTAGCTCAGCTATTGCAGGTTGAGAACCTCCCTGTAGGCCAGGAAGGTGAAAATGAAAGTTGGTTGGAGATCATTACGTATCTGTCTTGGGAGGCTGCTACACTGTTAAAGCCAGATATGAGCAAAGGTGGAGGGATGGATCCCGGTGGTTATGTAAAAGTAAAATGCATAGCTTCTGGACGTCCCTCTGACAGTATGGTGGTCAAAGGAGTTGTCTGTAAGAAAAATGTGGCTCATCGACGAATGGCATCTAAAATGGAGAAACCTCGGTTCATGATTCTTGGTGGTGCTCTTGAGTACCAGCGAGTTTCTAACCTATTGTCAAGTTTTGATACTCTTTTACAGCAGGAGATGGACCATTTAAAGATGGCAGTAGCAAAGATTGAAGCACACCACCCTGATGTCCTTCTGGTGGAGAAATCAGTTTCTCGATATGCTCAGGAATATCTTCTTGCAAAAGACATATCACTTGTTCTTAATATCAAGAGGCCACTTTTAGAGCGCATAGCTCGCTGCACAGGTGCTCAAATAGTTCCATCTATCGATCATCTCTCTTCACAAAAGTTGGGCTACTGTGAGACATTTCATGTTGGGAGGTTTCTGGAAGATCTTGGTTCTGCTGGCCAGGGTGGGAAGAAACTGGTGAAGACATTGATGTATTTTGAAGGCTGCCCAAAACCATTGGGTTGTACTATTTTACTCAGAGGTGCCAATGGGGATGAGTTGAAGAAAGTGAAGCATGTGGTTCAGTATGGGGTTTTTGCAGCATATCACTTGGCTTTGGAGACATCCTTCCTTGCTGATGAAGGTGCCTCTCTGCCTGAACTCCCATTCCAGTCTCCAATTACTGTCGCACTTCCAGATAAACCATCGAGTATTGAGAGGTCCATCTCAACAGTGCCTGGTTTTAGAATTGGTGCCAATGAAAAGTCTCTGGGAGCTCAACCTCAGAGTGAACCACGAAGAGCCAACAGTGTCCCGATTACAGATTTTGACTCAGCAATTAAGAGTAGACCACCATGTTTACTAACTGGTCGTAGCTCTCTACCTGTTCGTCCGACTTCAAGTTCCACAAATTCTACCGGTTTACCCTCTGCCCCACCTGGGAACGGTGTTACTTTTCATATCGCTGATAATCAAAATGAAATGGGCTCAAAAGATTCTTGGGTGGTGGAAACTTCTGCAACCAAACCTGGCTCTGATAATATGTCTAATCATCTTACTGCAAATAGCATGGGATCTTCAGAGGCCCTGGGACAAGGTATCTTCTCCAATACCCAAAATGATCCAAGTGTAAATCAGCTAGGTAGTTCAGACAATCCAATGCCGCATCAAGATGGTCAAACCCATGCTGCAGATGCAGGAACCATGAATGAAGAGTTCCCTCCGTCACCTGCTGACCATCAGAGCATTTTAGTTTCCCTGTCATCTCGATGCGTGTGGAAGGGGACTGTCTGTGAGAGGTCACATCTGTTCCGAATTAAATACTACGGAAGTTTTGATAAACCTTTAGGACGGTTTTTGCGAGACAATTTATTTGATCAGACCTATCAATGCCATTCTTGCGAGATGCCATCAGAGGCACATGTTCATTGTTATACTCACCGACAGGGTACACTCACTATATCTGTTAAGAGGCTGCCAGAAATTTTCTTACCAGGTGAAAGGGAAGGGAAGATCTGGATGTGGCACAGATGTTTGAGGTGTCCAAGGATCAGTGGATTTCCTCCAGCTACTCGGAGAATAGTGATGTCTGATGCTGCATGGGGTTTGTCATTTGGGAAGTTTTTGGAGCTCAGTTTTTCAAACCACGCGGCTGCAAGCAGGGTGGCGAGCTGTGGCCATTCCTTACATAGAGATTGTCTTCGTTTCTATGGATTTGGGAAAATGGTTGCTTGCTTTCGGTATGCATCGATTGATGTTCATTCTGTCTACCTTCCACCCTCCAAACTGGATTTCATTTCTGAGAAGCAGGAGTGGATACAAAAAGAAACTAATGAGGTTGTTGCCCGAGCAGAGCTTCTTTTCTCTGAAGTACTTAATGCTCTTAGTCAAATTTCGGAGAAAAGATCTGGTTCAGGGTCAATTACTAGTGGCATTGTAACAGCTGAATCCAGACACCAAATAGTGGAACTGGAAGGAATGTTACAGAAGGAGAAGGTGGAATTTGAGGAGTTACTTCAGAAAACTTTGAAGAGAGAACCTAAGAAGGGCCAACCTGTTATCGACATTCTGGAGATCAATCGATTGCGTAGGCAGTTGTTTTTTCAATCATATATGTGGGACCACCGCTTGGTTTATGCAGCCAGTTTAGATAACAACAGCTTCCAGGATAGTTTGAGCAGCTCAATTCCAGCTGAGGATAAACCCGTGGCTGCTAATGAAAAGCTTGCTGAGATGGATGTAGAAATAAAGCCCGGAAAAGGCTATAATAGTTGTGATTCTTTTCTGGTGGATGCAATGCATAGTGACGGCTTTGACCACGAGGGAGGCTTTACTAGCACTGCTATCAATGCAGACATGGTTCATGGAGAGGACATGAGTGATGATTTGAATAAGGAAAAAGGTCAAGCTAATCTCCCTACTAGCACAAGTGTCGGTGCTCAATCTGATCCTTTGACACCAAGGACAGCTCTTCGTAGGGTCCTATCTGATGGTCAGCATCCTCTCATGCTGAGTTTGTCAGATACCCTTGACACTGCATGGACCGGTGAAAATCTCATTGGAGTTGCGATAGCAAAGGAGAACTCGTGTCCAGTTCCTGACTTGGCCATAGAAAATTCTTCAAATGCCTCTCCGGCAGAGGGATTAAATTTAGACCATGCAGAAGCCCAAAATGGGACCAAAGTTGCCCATTATGTGTCACCTGCATTGTCGACCAAGGGGTCTGAGAATATGGAAGACACAGTAAGCTGGTTAAAAATGCCCTTTTTGAACTTCTACCGTTCTCTAAATAAGAATTTTTTATCTGCTGCTCAGAAGTTCGATACACTTGGTGGGTACAATCCAGTCTATGTGTCATCCTTTCGGGAGTTGGAACTGGAAGGTGGTGCTAGGCTGCTCTTGCCTGTGGGTGAAAACGATACTGTTGTCCCTGTATATGATGATGAGCCCACAAGTCTTATAGCCTATGCCCTTGTTTCATCAGATTATCAGTTACAAACCAGTGATGAGGGGGAAAGAGCAAAAGACAGTGGGGATATTATGGCTGCAGTATCTTTTACTGATTCAGTCATTATGCATCCAGATGATGACACTGTGTCTGAAACTCATAGAAGTCTTGGGTCTACTGAGGAGAGCATACTATCAATGTCTGGATCTCGTGGTTTGGATCCACTTTTATATACAAAGGCTTTGCATGCAAGAGTGTCTTTTGGAGATGATGGCCCTCTTGGTAAGGTTAAGTACTCTGTCACATGTTATTATGCAAAGCGATTTGAAGCTTTAAGGAAGATGTGTTGTCCCTCTGAGCTTGATTTTGTAAGATCCCTAAGTCGTTGTAAAAAGTGGGGAGCCCAAGGAGGTAAGAGCAATGTCTTTTTTGCAAAAACCTTGGATGACCGGTTTATCGTCAAACAAGTCACCAAGACAGAGCTGGAATCTTTCATTAAATTTGCACCTGCATATTTCAAGTACCTCTCTGAGTCAATTAGCACAGGAAGTCCAACCTGCCTGGCAAAAATTCTGGGGATATATCAGGTTATGTCGAAGCATGTTAAGGGAGGCAAAGAAACAAAGATGGATGTTTTGATTATGGAGAATCTTCTGTTTGGAAGGACTGTAACACGACTCTATGATCTCAAAGGATCTTCACGGTCAAGGTATAATCCTGATTCTAGTGGGAGTAACAAGGTTCTACTGGATCAGAACTTGATTGAAGCAATGCCAACATCTCCAATCTTCGTGGGAAACAAGGCAAAGCGGCTGTTGGAGAGAGCTGTCTGGAATGATACCGCTTTCCTTGCCTCAATTGATGTGATGGATTATTCATTACTGGTCGGGGTGGATGAAGAGAAGCATGAGCTAGTACTTGGGATCATTGATTTCATGAGGCAGTATACATGGGATAAGCACCTTGAAACGTGGGTTAAAGCTTCAGGAATCCTTGGTGGGCCAAAGAATGCATCTCCGACCGTAATTTCACCAAAGCAATACAAAAAAAGGTTCAGGAAGGCCATGACAACCTATTTTCTGATGGTTCCAGATCAGTGGTCTCCTCTGTCTATTGTTCCAAGTACATCCCAGTCTGATATCGGTGAAGAGAATACACAAGGTAGTGCCTCGGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009555 GO:0009987 GO:0010008 GO:0010118 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032501 GO:0032502 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0090332 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

1816

Amino Acids

200.78

Weight (kDa)

5.57

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	33 - 102	6.1e-18	FYVE zinc finger
Cpn60_TCP1	PF00118	408 - 651	1.7e-30	TCP-1/cpn60 chaperonin family
PIP5K	PF01504	1558 - 1724	3.4e-33	Phosphatidylinositol-4-phosphate 5-Kinase
PIP5K	PF01504	1723 - 1780	7.1e-08	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14270 AT3G14270
fragaria_vesca	FvH4_6g35770 FvH4_6g35770 FvH4_6g35770
malus_domestica	MD09G1173300.v1.1 MD17G1154000.v1.1
prunus_persica	Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1
pyrus_communis	pycom09g09070 pycom17g14660
rosa_chinensis	RchiOBHm_Chr2g0147811
rosa_laevigata	RLG00000020280
rosa_multiflora	Rmu_sc0000308.1_g000046
rosa_roxburghii	Rroxscaffold_2G00099330
rosa_rugosa	Rorug02G0401800 Rorug02G0401800 Rorug02G0401800 Rorug02G0401900
rosa_samantha	Rh2AG459000 Rh2BG472300 Rh2CG446400 Rh2DG481300
rosa_wichuraiana	Rw2G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AarI	CACCTGC	3 cut(s)	2557, 4030, 4783
AasI	GACNNNNNNGTC	2 cut(s)	658, 4039
AatII	GACGTC	1 cut(s)	1339
Acc36I	ACCTGC	5 cut(s)	1162, 2557, 4030, 4783, 4832
AccB1I	GGYRCC	3 cut(s)	1862, 1964, 2072
AccB7I	CCANNNNNTGG	2 cut(s)	3283, 3448
AccI	GTMKAC	6 cut(s)	175, 2167, 3087, 4031, 4442, 5213
AccII	CGCG	1 cut(s)	2969
AciI	CCGC	7 cut(s)	405, 1071, 2483, 2969, 3445, 5077, 5109
AcoI	YGGCCR	3 cut(s)	1777, 2995, 3924
AcsI	RAATTY	9 cut(s)	2230, 2802, 3210, 3320, 3934, 3967, 4114, 4766, 4836
AcuI	CTGAAG	4 cut(s)	2382, 3207, 3320, 5235
AcyI	GRCGYC	1 cut(s)	1336
AdeI	CACNNNGTG	1 cut(s)	4151
AflIII	ACRYGT	2 cut(s)	2740, 4571
AgeI	ACCGGT	3 cut(s)	2237, 3863, 4716
AhdI	GACNNNNNGTC	1 cut(s)	4414
AhlI	ACTAGT	1 cut(s)	3245
AjuI	GAANNNNNNNTTGG	4 cut(s)	3095, 3127, 3861, 3893
AloI	GAACNNNNNNTCC	2 cut(s)	1971, 2003
Alw21I	GWGCWC	5 cut(s)	1447, 1681, 2098, 2952, 3760
Alw26I	GTCTC	7 cut(s)	1083, 1727, 1934, 1998, 2091, 2676, 5373
AlwNI	CAGNNNCTG	2 cut(s)	2057, 3917
Ama87I	CYCGRG	1 cut(s)	3165
ApoI	RAATTY	9 cut(s)	2230, 2802, 3210, 3320, 3934, 3967, 4114, 4766, 4836
ArsI	GACNNNNNNTTYG	4 cut(s)	1353, 1385, 2675, 2707
AsiGI	ACCGGT	3 cut(s)	2237, 3863, 4716
Asp700I	GAANNNNTTC	3 cut(s)	270, 993, 1602
AspLEI	GCGC	2 cut(s)	200, 1659
AsuC2I	CCSGG	2 cut(s)	1299, 3573
AvaI	CYCGRG	1 cut(s)	3165
AvaII	GGWCC	7 cut(s)	558, 1510, 2040, 3439, 3799, 3861, 3996
BaeGI	GKGCMC	1 cut(s)	1143
BaeI	ACNNNNGTAYC	2 cut(s)	4230, 4263
BalI	TGGCCA	3 cut(s)	1779, 2997, 3926
BamHI	GGATCC	4 cut(s)	54, 829, 1294, 4486
BanI	GGYRCC	3 cut(s)	1862, 1964, 2072
BanII	GRGCYC	5 cut(s)	2098, 2309, 2952, 4269, 4672
BarI	GAAGNNNNNNTAC	2 cut(s)	3285, 3317
BauI	CACGAG	3 cut(s)	3638, 3904, 4476
BbsI	GAAGAC	3 cut(s)	1808, 3011, 4062
Bbv12I	GWGCWC	5 cut(s)	1447, 1681, 2098, 2952, 3760
BbvCI	CCTCAGC	1 cut(s)	3513
BceAI	ACGGC	1 cut(s)	3643
BcgI	CGANNNNNNTGC	4 cut(s)	177, 211, 3733, 3767
BciVI	GTATCC	1 cut(s)	3129
BclI	TGATCA	1 cut(s)	2695
BcnI	CCSGG	2 cut(s)	1299, 3573
BcoDI	GTCTC	7 cut(s)	1083, 1727, 1934, 1998, 2091, 2676, 5373
BcuI	ACTAGT	1 cut(s)	3245
BfaI	CTAG	9 cut(s)	353, 390, 2459, 3246, 3654, 3741, 4209, 4992, 5180
BfmI	CTRYAG	6 cut(s)	115, 897, 1026, 1188, 2508, 4365
BfuAI	ACCTGC	5 cut(s)	1162, 2557, 4030, 4783, 4832
BfuI	GTATCC	1 cut(s)	3129
BglI	GCCNNNNNGGC	1 cut(s)	3953
BglII	AGATCT	4 cut(s)	355, 1762, 2832, 3224
BlpI	GCTNAGC	1 cut(s)	1161
BmcAI	AGTACT	3 cut(s)	3192, 4562, 5184
Bme18I	GGWCC	7 cut(s)	558, 1510, 2040, 3439, 3799, 3861, 3996
BmeRI	GACNNNNNGTC	1 cut(s)	4414
BmeT110I	CYCGRG	1 cut(s)	3165
BmrI	ACTGGG	2 cut(s)	465, 5392
BmuI	ACTGGG	2 cut(s)	465, 5392
BpiI	GAAGAC	3 cut(s)	1808, 3011, 4062
BpmI	CTGGAG	3 cut(s)	574, 2868, 3410
Bpu10I	CCTNAGC	2 cut(s)	1593, 3513
Bpu1102I	GCTNAGC	1 cut(s)	1161
BpuEI	CTTGAG	3 cut(s)	226, 666, 1469
BpuMI	CCSGG	2 cut(s)	1299, 3573
Bsa29I	ATCGAT	3 cut(s)	1698, 3068, 3400
BsaAI	YACGTR	1 cut(s)	1233
BsaHI	GRCGYC	1 cut(s)	1336
BsaI	GGTCTC	1 cut(s)	5373
BsaWI	WCCGGW	3 cut(s)	2237, 3863, 4716
BsaXI	ACNNNNNCTCC	2 cut(s)	3890, 3920
Bse118I	RCCGGY	4 cut(s)	73, 2237, 3863, 4716
Bse3DI	GCAATG	4 cut(s)	312, 3621, 4693, 5043
BseCI	ATCGAT	3 cut(s)	1698, 3068, 3400
BseMI	GCAATG	4 cut(s)	312, 3621, 4693, 5043
BseRI	GAGGAG	4 cut(s)	1118, 3341, 4463, 5361
BseSI	GKGCMC	1 cut(s)	1143
BsgI	GTGCAG	1 cut(s)	1654
Bsh1236I	CGCG	1 cut(s)	2969
Bsh1285I	CGRYCG	1 cut(s)	5289
BshNI	GGYRCC	3 cut(s)	1862, 1964, 2072
BshTI	ACCGGT	3 cut(s)	2237, 3863, 4716
BshVI	ATCGAT	3 cut(s)	1698, 3068, 3400
BsiEI	CGRYCG	1 cut(s)	5289
BsiHKAI	GWGCWC	5 cut(s)	1447, 1681, 2098, 2952, 3760
BsiHKCI	CYCGRG	1 cut(s)	3165
BsiSI	CCGG	7 cut(s)	74, 1299, 2238, 3573, 3864, 3953, 4717
BslFI	GGGAC	9 cut(s)	664, 1323, 2117, 2424, 2617, 3452, 4009, 4232, 4602
BsmAI	GTCTC	7 cut(s)	1083, 1727, 1934, 1998, 2091, 2676, 5373
BsmFI	GGGAC	9 cut(s)	664, 1323, 2117, 2424, 2617, 3452, 4009, 4232, 4602
BsmI	GAATGC	1 cut(s)	5281
Bso31I	GGTCTC	1 cut(s)	5373
BsoBI	CYCGRG	1 cut(s)	3165
Bsp1286I	GDGCHC	9 cut(s)	1143, 1447, 1681, 2098, 2309, 2952, 3760, 4269, 4672
Bsp1407I	TGTACA	1 cut(s)	206
Bsp1720I	GCTNAGC	1 cut(s)	1161
BspACI	CCGC	7 cut(s)	405, 1071, 2483, 2969, 3445, 5077, 5109
BspDI	ATCGAT	3 cut(s)	1698, 3068, 3400
BspFNI	CGCG	1 cut(s)	2969
BspHI	TCATGA	3 cut(s)	730, 1428, 5202
BspMAI	CTGCAG	4 cut(s)	901, 1030, 2512, 4369
BspMI	ACCTGC	5 cut(s)	1162, 2557, 4030, 4783, 4832
BspQI	GCTCTTC	2 cut(s)	2113, 3795
BspT107I	GGYRCC	3 cut(s)	1862, 1964, 2072
BspTNI	GGTCTC	1 cut(s)	5373
BsrDI	GCAATG	4 cut(s)	312, 3621, 4693, 5043
BsrFI	RCCGGY	4 cut(s)	73, 2237, 3863, 4716
BsrGI	TGTACA	1 cut(s)	206
BssAI	RCCGGY	4 cut(s)	73, 2237, 3863, 4716
BssNAI	GTATAC	1 cut(s)	5214
BssNI	GRCGYC	1 cut(s)	1336
BssSI	CACGAG	3 cut(s)	3638, 3904, 4476
BssT1I	CCWWGG	7 cut(s)	59, 2864, 3779, 4035, 4672, 4707, 5260
Bst1107I	GTATAC	1 cut(s)	5214
Bst2BI	CACGAG	3 cut(s)	3638, 3904, 4476
Bst6I	CTCTTC	8 cut(s)	252, 1714, 2113, 2526, 3344, 3795, 5160, 5409
BstACI	GRCGYC	1 cut(s)	1336
BstAUI	TGTACA	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	1233
BstC8I	GCNNGC	8 cut(s)	75, 1666, 1777, 2977, 2989, 3052, 3546, 4515
BstDSI	CCRYGG	1 cut(s)	3525
BstENI	CCTNNNNNAGG	1 cut(s)	553
BstFNI	CGCG	1 cut(s)	2969
BstHHI	GCGC	2 cut(s)	200, 1659
BstMAI	GTCTC	7 cut(s)	1083, 1727, 1934, 1998, 2091, 2676, 5373
BstMCI	CGRYCG	1 cut(s)	5289
BstNSI	RCATGY	5 cut(s)	1898, 2744, 4517, 4575, 4871
BstSFI	CTRYAG	6 cut(s)	115, 897, 1026, 1188, 2508, 4365
BstSLI	GKGCMC	1 cut(s)	1143
BstSNI	TACGTA	1 cut(s)	1233
BstUI	CGCG	1 cut(s)	2969
BstV2I	GAAGAC	3 cut(s)	1808, 3011, 4062
BstXI	CCANNNNNNTGG	1 cut(s)	5364
BstZ17I	GTATAC	1 cut(s)	5214
Bsu15I	ATCGAT	3 cut(s)	1698, 3068, 3400
BsuI	GTATCC	1 cut(s)	3129
BsuTUI	ATCGAT	3 cut(s)	1698, 3068, 3400
BtgI	CCRYGG	1 cut(s)	3525
BtsI	GCAGTG	2 cut(s)	3657, 3852
BveI	ACCTGC	5 cut(s)	1162, 2557, 4030, 4783, 4832
Cac8I	GCNNGC	8 cut(s)	75, 1666, 1777, 2977, 2989, 3052, 3546, 4515
CaiI	CAGNNNCTG	2 cut(s)	2057, 3917
CciI	TCATGA	3 cut(s)	730, 1428, 5202
CfoI	GCGC	2 cut(s)	200, 1659
Cfr10I	RCCGGY	4 cut(s)	73, 2237, 3863, 4716
ClaI	ATCGAT	3 cut(s)	1698, 3068, 3400
CsiI	ACCWGGT	1 cut(s)	2812
CspAI	ACCGGT	3 cut(s)	2237, 3863, 4716
CspCI	CAANNNNNGTGG	4 cut(s)	2964, 2999, 5040, 5075
DraI	TTTAAA	1 cut(s)	1518
DraIII	CACNNNGTG	1 cut(s)	4151
DrdI	GACNNNNNNGTC	2 cut(s)	658, 4039
DriI	GACNNNNNGTC	1 cut(s)	4414
DseDI	GACNNNNNNGTC	2 cut(s)	658, 4039
EaeI	YGGCCR	3 cut(s)	1777, 2995, 3924
Eam1104I	CTCTTC	8 cut(s)	252, 1714, 2113, 2526, 3344, 3795, 5160, 5409
Eam1105I	GACNNNNNGTC	1 cut(s)	4414
EarI	CTCTTC	8 cut(s)	252, 1714, 2113, 2526, 3344, 3795, 5160, 5409
Ecl136II	GAGCTC	2 cut(s)	2096, 2950
Eco105I	TACGTA	1 cut(s)	1233
Eco130I	CCWWGG	7 cut(s)	59, 2864, 3779, 4035, 4672, 4707, 5260
Eco24I	GRGCYC	5 cut(s)	2098, 2309, 2952, 4269, 4672
Eco31I	GGTCTC	1 cut(s)	5373
Eco32I	GATATC	1 cut(s)	5407
Eco47I	GGWCC	7 cut(s)	558, 1510, 2040, 3439, 3799, 3861, 3996
Eco53kI	GAGCTC	2 cut(s)	2096, 2950
Eco57I	CTGAAG	4 cut(s)	2382, 3207, 3320, 5235
Eco88I	CYCGRG	1 cut(s)	3165
EcoICRI	GAGCTC	2 cut(s)	2096, 2950
EcoNI	CCTNNNNNAGG	1 cut(s)	553
EcoO109I	RGGNCCY	2 cut(s)	2404, 3799
EcoRV	GATATC	1 cut(s)	5407
EcoT14I	CCWWGG	7 cut(s)	59, 2864, 3779, 4035, 4672, 4707, 5260
EcoT22I	ATGCAT	5 cut(s)	1325, 3067, 3621, 4398, 5281
EcoT38I	GRGCYC	5 cut(s)	2098, 2309, 2952, 4269, 4672
ErhI	CCWWGG	7 cut(s)	59, 2864, 3779, 4035, 4672, 4707, 5260
FalI	AAGNNNNNCTT	2 cut(s)	4510, 4542
FaqI	GGGAC	9 cut(s)	664, 1323, 2117, 2424, 2617, 3452, 4009, 4232, 4602
FauI	CCCGC	1 cut(s)	1064
FbaI	TGATCA	1 cut(s)	2695
FblI	GTMKAC	6 cut(s)	175, 2167, 3087, 4031, 4442, 5213
FriOI	GRGCYC	5 cut(s)	2098, 2309, 2952, 4269, 4672
FspBI	CTAG	9 cut(s)	353, 390, 2459, 3246, 3654, 3741, 4209, 4992, 5180
GlaI	GCGC	2 cut(s)	199, 1658
GsuI	CTGGAG	3 cut(s)	574, 2868, 3410
HapII	CCGG	7 cut(s)	74, 1299, 2238, 3573, 3864, 3953, 4717
HhaI	GCGC	2 cut(s)	200, 1659
Hin1I	GRCGYC	1 cut(s)	1336
Hin6I	GCGC	2 cut(s)	198, 1657
HinP1I	GCGC	2 cut(s)	198, 1657
HincII	GTYRAC	4 cut(s)	176, 643, 910, 4032
HindII	GTYRAC	4 cut(s)	176, 643, 910, 4032
HindIII	AAGCTT	3 cut(s)	3542, 4596, 5247
HpaII	CCGG	7 cut(s)	74, 1299, 2238, 3573, 3864, 3953, 4717
Hpy99I	CGWCG	2 cut(s)	638, 1398
HpyCH4IV	ACGT	4 cut(s)	912, 1232, 1336, 5237
HpySE526I	ACGT	4 cut(s)	912, 1232, 1336, 5237
Hsp92I	GRCGYC	1 cut(s)	1336
HspAI	GCGC	2 cut(s)	198, 1657
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	2695
LguI	GCTCTTC	2 cut(s)	2113, 3795
LmnI	GCTCC	5 cut(s)	797, 1105, 2093, 2947, 4667
MabI	ACCWGGT	1 cut(s)	2812
MaeI	CTAG	9 cut(s)	353, 390, 2459, 3246, 3654, 3741, 4209, 4992, 5180
MaeII	ACGT	4 cut(s)	912, 1232, 1336, 5237
MfeI	CAATTG	1 cut(s)	5124
MhlI	GDGCHC	9 cut(s)	1143, 1447, 1681, 2098, 2309, 2952, 3760, 4269, 4672
MlsI	TGGCCA	3 cut(s)	1779, 2997, 3926
MluNI	TGGCCA	3 cut(s)	1779, 2997, 3926
MlyI	GAGTC	5 cut(s)	233, 1085, 2144, 4808, 4938
MmeI	TCCRAC	6 cut(s)	1200, 2237, 4170, 4844, 5064, 5309
Mox20I	TGGCCA	3 cut(s)	1779, 2997, 3926
Mph1103I	ATGCAT	5 cut(s)	1325, 3067, 3621, 4398, 5281
MroNI	GCCGGC	1 cut(s)	73
MroXI	GAANNNNTTC	3 cut(s)	270, 993, 1602
MscI	TGGCCA	3 cut(s)	1779, 2997, 3926
MslI	CAYNNNNRTG	5 cut(s)	1554, 2490, 2587, 3433, 4401
Msp20I	TGGCCA	3 cut(s)	1779, 2997, 3926
MspA1I	CMGCKG	3 cut(s)	1071, 3263, 3512
MspI	CCGG	7 cut(s)	74, 1299, 2238, 3573, 3864, 3953, 4717
MunI	CAATTG	1 cut(s)	5124
Mva1269I	GAATGC	1 cut(s)	5281
MvnI	CGCG	1 cut(s)	2969
NaeI	GCCGGC	1 cut(s)	75
NciI	CCSGG	2 cut(s)	1299, 3573
NgoMIV	GCCGGC	1 cut(s)	73
NmuCI	GTSAC	7 cut(s)	236, 2544, 2619, 3623, 4017, 4567, 4735
NsiI	ATGCAT	5 cut(s)	1325, 3067, 3621, 4398, 5281
NspI	RCATGY	5 cut(s)	1898, 2744, 4517, 4575, 4871
PaeI	GCATGC	1 cut(s)	4517
PagI	TCATGA	3 cut(s)	730, 1428, 5202
PaqCI	CACCTGC	3 cut(s)	2557, 4030, 4783
PasI	CCCWGGG	1 cut(s)	2407
PciI	ACATGT	2 cut(s)	2740, 4571
PciSI	GCTCTTC	2 cut(s)	2113, 3795
PcsI	WCGNNNNNNNCGW	1 cut(s)	2677
PctI	GAATGC	1 cut(s)	5281
PdiI	GCCGGC	1 cut(s)	75
PdmI	GAANNNNTTC	3 cut(s)	270, 993, 1602
PflMI	CCANNNNNTGG	2 cut(s)	3283, 3448
PfoI	TCCNGGA	2 cut(s)	551, 3483
PinAI	ACCGGT	3 cut(s)	2237, 3863, 4716
PleI	GAGTC	5 cut(s)	233, 1084, 2144, 4807, 4938
PpsI	GAGTC	5 cut(s)	233, 1084, 2144, 4807, 4938
Ppu21I	YACGTR	1 cut(s)	1233
PpuMI	RGGWCCY	1 cut(s)	3799
PscI	ACATGT	2 cut(s)	2740, 4571
PsiI	TTATAA	1 cut(s)	294
Psp124BI	GAGCTC	2 cut(s)	2098, 2952
Psp5II	RGGWCCY	1 cut(s)	3799
PspPPI	RGGWCCY	1 cut(s)	3799
PstI	CTGCAG	4 cut(s)	901, 1030, 2512, 4369
PstNI	CAGNNNCTG	2 cut(s)	2057, 3917
PvuII	CAGCTG	2 cut(s)	3263, 3512
RseI	CAYNNNNRTG	5 cut(s)	1554, 2490, 2587, 3433, 4401
SacI	GAGCTC	2 cut(s)	2098, 2952
SalI	GTCGAC	2 cut(s)	174, 4030
SapI	GCTCTTC	2 cut(s)	2113, 3795
ScaI	AGTACT	3 cut(s)	3192, 4562, 5184
SchI	GAGTC	5 cut(s)	233, 1085, 2144, 4808, 4938
SduI	GDGCHC	9 cut(s)	1143, 1447, 1681, 2098, 2309, 2952, 3760, 4269, 4672
SexAI	ACCWGGT	1 cut(s)	2812
SfcI	CTRYAG	6 cut(s)	115, 897, 1026, 1188, 2508, 4365
SinI	GGWCC	7 cut(s)	558, 1510, 2040, 3439, 3799, 3861, 3996
SmiMI	CAYNNNNRTG	5 cut(s)	1554, 2490, 2587, 3433, 4401
SmlI	CTYRAG	3 cut(s)	241, 681, 1448
SmoI	CTYRAG	3 cut(s)	241, 681, 1448
SnaBI	TACGTA	1 cut(s)	1233
SpeI	ACTAGT	1 cut(s)	3245
SphI	GCATGC	1 cut(s)	4517
SsiI	CCGC	7 cut(s)	405, 1071, 2483, 2969, 3445, 5077, 5109
SspMI	CTAG	9 cut(s)	353, 390, 2459, 3246, 3654, 3741, 4209, 4992, 5180
SstI	GAGCTC	2 cut(s)	2098, 2952
StyI	CCWWGG	7 cut(s)	59, 2864, 3779, 4035, 4672, 4707, 5260
TaiI	ACGT	4 cut(s)	915, 1235, 1339, 5240
TatI	WGTACW	6 cut(s)	206, 1844, 3190, 4560, 5182, 5390
TauI	GCSGC	4 cut(s)	408, 2485, 2972, 5080
TseFI	GTSAC	7 cut(s)	236, 2544, 2619, 3623, 4017, 4567, 4735
Tsp45I	GTSAC	7 cut(s)	236, 2544, 2619, 3623, 4017, 4567, 4735
TspGWI	ACGGA	2 cut(s)	2532, 2661
Van91I	CCANNNNNTGG	2 cut(s)	3283, 3448
VpaK11BI	GGWCC	7 cut(s)	558, 1510, 2040, 3439, 3799, 3861, 3996
XagI	CCTNNNNNAGG	1 cut(s)	553
XapI	RAATTY	9 cut(s)	2230, 2802, 3210, 3320, 3934, 3967, 4114, 4766, 4836
XbaI	TCTAGA	1 cut(s)	352
XceI	RCATGY	5 cut(s)	1898, 2744, 4517, 4575, 4871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4747
XmiI	GTMKAC	6 cut(s)	175, 2167, 3087, 4031, 4442, 5213
XmnI	GAANNNNTTC	3 cut(s)	270, 993, 1602
XspI	CTAG	9 cut(s)	353, 390, 2459, 3246, 3654, 3741, 4209, 4992, 5180
ZraI	GACGTC	1 cut(s)	1337
ZrmI	AGTACT	3 cut(s)	3192, 4562, 5184
Zsp2I	ATGCAT	5 cut(s)	1325, 3067, 3621, 4398, 5281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.