Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000308.1

Orthogroup ID

OG0005238

Physical Location & Seq

Genomic Coordinates Forward (+)

198979 .. 207404

Gene Structure 8426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000308.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5691 bp

atggtgaaatcatggatcccttggcgatctgagccggctaatgtttcgagggatttttggatgcctgatgatagctgtagggtatgttatgagtgtgatgcacagttcactgtatttaaccgtaaacatcattgtagactttgtggacgagttttctgtgccaagtgtacagaaaactcaattcctgccccctctggtgactcaaggatagatcgggaagagagggaaaggattcgtgtctgcaatttttgttacaagcaacaacagcaaggcatagctgctactcctgataatggaacacagattgctaatctagatcttagtacctcaccatcagaaacaagttttactagctttaagtcatgcgccactggtaacagcagtagctttactcttaactcaatcccgtactcaactgggccataccaacgacttcaaaacagttctggtcttagcccctgtcaatcatctcccatgaaaacaagctcagaaaagcacagcaaatatgcctcctggaggaccaatgattttgttgcagatataggggattcatctccaaatcattatgagacttcaacaaccaggtttatatctcttttgtgcttgagcactggtaacagcagtagctttactcttaactcaatcccgtactcaactgggccataccaacgacttcaaaacagttctggtcttagcccctgccaatcatctcccatgaaaacaagctcagaaaagcacagcaaatatgcctcctggaggaccaatgattttgttgcagatataggggattcatctccaaatcattatgagatttcaacaaccagcatcaggagtgatgacgacgatgttgactatgggacatatcagtcagattctaagaattattctcaagtcaatgattactatggtcatgttgagttttatgagatgagcaatcatgatgaatcacataaagtgcaacttgatggtgaaaacattgatgcaaagcatttaagcagctccccgttgcttcacagttttaactcgcagggttcggatccaccacttgaaaagaaagaagatgaacatgatatgggtgatgaatgtgcttcctctttatgttctgctggggatgttgacgtagaacctgtggattttgagaacaatgcccttctttggcttccccctgaaccagaagatgaagaagatgaaagggaaactgttcttcttgatgatgacgatgatggtgatgctgcaggagagtggggaaccttacgcacatcaagcagttttggcagcggggagtctcgcaatagggatcgatcaggtgaggagcataagaaggtgatgaagaatgtggttgatgggcactttagggctttggtagctcagctattgcaggttgagaacctccctgtaggccaggaaggtgaaaatgaaagttggttggagatcattacgtatctgtcttgggaggctgctacactgttaaagccagatatgagcaaaggtggagggatggatcctggtggttatgtaaaagtaaaatgcatagcttctggacgcccctctgacagtatggtggtcaaaggagttgtctgtaagaaaaatgtggctcatcgacgaatggcatctaaaatggagaaacctcggttcatgattcttggtggtgctcttgagtaccagcgagtttctaacctattgtcaagttttgatacccttttacagcaggagatggaccatttaaagatggcagtagcaaagattgaagcgcaccaccctgatgtccttctggtagagaaatcagtttctcgatatgctcaggaatatcttcttgcaaaagacatatcacttgttcttaatatcaagaggccacttttagagcgcatagctcgctgcacaggtgctcaaatagttccatctatcgatcatctctcttcacaaaagttgggctactgtgagacatttcatgtggggaggtttctggaagatcttggttctgctggccagggtgggaagaaactggtgaagacattgatgtattttgaaggctgcccaaaaccattgggttgtactattttactcagaggtgccaatggggatgagttgaagaaagtgaagcatgtggttcagtatggggtttttgcagcatatcacttggctttggagacatccttccttgctgatgaaggtgcctctctgcctgaactcccattccagtctccaattactgtggcacttccagataaaccatcgagtattgagaggtccatctcaacagtacctggttttagaattggtgccaacgaaaagtctcagggagctcaacctcagagtgaaccacgaagagccaacagtgtcccgattacagattttgactcagcaattaagagtagaccaccatgtttactaactggtcgtagctctctacctgttcgtccgacttcaagttccacaaattctaccggtttacactctgccccacctgggaacggtgttacttttcatatcgctgataatcaaaatgaaatgggccccaaagattcttgggtggtggaaacttctgcaaccaaacctggctctgataatatgtctaatcatcttactgcaaatagcatgggatcttcagaggccctgggacaaggtatcttctccaatacccaaaatgatccaagtgtaaatcagctaggtagttcaggcaatccaatgctgcatcaagatggtcaaacccatgctgcagatgcaggaaccatgaatgaagagttccctccgtcacctgctgaccatcagagcattttagtttccttgtcatctcgatgcgtgtggaaggggactgtctgtgagaggtcacatctgttccgaattaaatactacggaagttttgataaacctttaggacggtttttgcgagaccatttatttgatcagacctatcaatgccattcttgcgagatgccatcagaggcacatgttcattgttatactcaccgacagggtacactcactatatctgttaagaggctgccagaaattttcttaccaggtgaaagggaagggaagatctggatgtggcacagatgtttgaggtgtccaaggatcagtggatttcctccagctactcggagaatagtgatgtctgatgctgcatggggtttgtcatttggtaagtttttggagctcagtttttcaaaccatgcggctgcaagcagggtggcgagctgtggccattccttacatagagattgtcttcgtttctatggatttgggaaaatggttgcttgctttcggtatgcatcgattgatgttcattctgtctaccttccaccctccaaactggatttcatttccgagaagcaggattggatacaaaaagaaactaatgaggttgttgcccgagcagagcttcttttctctgaagtacttaatgctcttagtcaaatttcagagaaaagatctggttcagggtcaattactagtggcattgtaacagctgaatccagacaccaaatagtggaactggaaggaatgttacagaaggagaaggtggaatttgaggagttacttcagaaaactttgaagagagaacctaagaagggccaacctgttatcgacattctggagatcaatcgattgcggaggcagttgttttttcaatcgtatatgtgggaccaccgcttggtttatgcagccagtttagataacaacagcttccaggatagtttgagcagctcaattccagctgaggataaacccgtggctactaatgaaaagcttgctgagatggatgtagaaataaagccaggaaaaggctataatagttgtgattcctatctggtggatgcaatgcttagtgatggctttgaccacgagggaggctttactagcgctgctatcaatgcagacatggttcatggagaggacaggagtgatgatttgaataaggaaaaaggtcaagctaatctccctactagcacaagtgtcggcgctcaatctgatcctttgacaccaaggacagctcttcgtagggtcctatctgatggtcagcatcctctcatgctgaatttgtcagatacccttgacactgcatggaccggcgaaaatctcattggagttgcgatagcaaaggagaactcgtgtccagttcctgacgtggccatagaaaattcttcaaatgccactccggcagagggattaaatttagaccatgcagaagcccaaaatgggaccaaagttgcccattatgtgtcacctgcattgtcgaccaaggggtctgagaatatggaagacacagttagctggttaaaaatgccctttttgaacttctaccgttcactaaataagaattttttatctgctgctcagaagttcgatacacttggtgggtacaatccagtctatgtgtcatcctttcgggagttggaactggaaggtggtgctaggctgctcttgcctgtgggtgaaaacgatactgttgtccctgtatatgatgatgagcccacaagtcttatagcctatgcccttgtttcatcagattatcagttacaaaccagtgatgagggggaaagagcaaaagacagtggggatattatggccacagcatcttttactgattcagtcattatgcatccagatgatgacactgtgtcagaaactcatagaagtcttgggtctactgaagagagcatactatcaatgtctggatctcgtggctccctgggtttggatccacttttatatacaaaggctttgcatgcaagagtgtcttttggagatgatggtcctcttggtaaggttaagtactctgtcacatgttattatgcaaagcgttttgaagccttaaggaagttgtgttgtccctctgagcttgattttgtaagatccctaagtcgttgtaaaaagtggggagcccaaggaggtaagagcaattggggagcccaaggaggtaagagcaatgtcttttttgcaaaaaccttggatgaccggtttatcgtcaaacaagtcaccaagacagagctggaatctttcattaaatttgcacctgcatatttcaagtacctctctgagtcaattagcacaggaagtccaacctgcctggcaaaaattctggggatatatcaggttatgtcgaagcatgttaagggaggcaaagaaacaaagatggatgttttgattatggagaatcttctgtttggaaggactgtaacacgactctatgatctcaaaggatcttcgcggtcaaggtataatcctgattctagtgggagtaacaaggttcttctggatcagaacttgattgaagcaatgccaacatctccaatcttcgtgggaaacaaggcaaagcggctgttggagagagctgtctggaatgataccgctttccttgcctcaattgatgtgatggattattcattactggtcggggtggatgaagagaagcatgagctagtacttgggatcattgatttcatgaggcagtatacatgggataagcaccttgaaacgtgggttaaagcttcaggaatccttggtgggccaaagaacgcatctccgactgtaatttcaccaaagcaatacaaaaaaaggttcaggaaggccatgacaacctattttctgatggttccagatcagtggtctcctccatctattgttccaagtacatcccagtctgatatcggtgaagagaatgcacacggtggtgcctctgttgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009555 GO:0009987 GO:0010008 GO:0010118 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032501 GO:0032502 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0090332 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

1896

Amino Acids

209.47

Weight (kDa)

5.7

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14270 AT3G14270
fragaria_vesca	FvH4_6g35770 FvH4_6g35770 FvH4_6g35770
malus_domestica	MD09G1173300.v1.1 MD17G1154000.v1.1
prunus_persica	Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1
pyrus_communis	pycom09g09070 pycom17g14660
rosa_chinensis	RchiOBHm_Chr2g0147811
rosa_laevigata	RLG00000020280
rosa_multiflora	Rmu_sc0000308.1_g000046
rosa_roxburghii	Rroxscaffold_2G00099330
rosa_rugosa	Rorug02G0401800 Rorug02G0401800 Rorug02G0401800 Rorug02G0401900
rosa_samantha	Rh2AG459000 Rh2BG472300 Rh2CG446400 Rh2DG481300
rosa_wichuraiana	Rw2G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	2764, 4237, 5026
AasI	GACNNNNNNGTC	2 cut(s)	865, 4246
Acc36I	ACCTGC	5 cut(s)	1369, 2764, 4237, 5026, 5075
AccB1I	GGYRCC	4 cut(s)	2069, 2171, 2279, 5675
AccB7I	CCANNNNNTGG	2 cut(s)	3490, 3655
AccI	GTMKAC	6 cut(s)	136, 2374, 3294, 4238, 4649, 5456
AccII	CGCG	1 cut(s)	5212
AciI	CCGC	7 cut(s)	1278, 3176, 3613, 3652, 5212, 5320, 5352
AcoI	YGGCCR	4 cut(s)	1984, 3202, 4131, 4569
AcuI	CTGAAG	5 cut(s)	2589, 3414, 3527, 4674, 5478
AcyI	GRCGYC	1 cut(s)	1543
AdeI	CACNNNGTG	2 cut(s)	4358, 5672
AfeI	AGCGCT	1 cut(s)	3865
AflII	CTTAAG	1 cut(s)	4816
AflIII	ACRYGT	2 cut(s)	2947, 4787
AgeI	ACCGGT	2 cut(s)	2444, 4959
AhdI	GACNNNNNGTC	1 cut(s)	4621
AhlI	ACTAGT	1 cut(s)	3452
AjiI	CACGTC	1 cut(s)	4129
AjuI	GAANNNNNNNTTGG	4 cut(s)	3302, 3334, 4068, 4100
AleI	CACNNNNGTG	1 cut(s)	5673
AloI	GAACNNNNNNTCC	2 cut(s)	2178, 2210
Alw21I	GWGCWC	5 cut(s)	611, 1654, 1888, 2305, 3159
Alw26I	GTCTC	8 cut(s)	563, 1290, 1934, 2141, 2205, 2298, 2883, 5616
AlwNI	CAGNNNCTG	2 cut(s)	2264, 4124
Ama87I	CYCGRG	1 cut(s)	3372
Aor51HI	AGCGCT	1 cut(s)	3865
ApaI	GGGCCC	1 cut(s)	2516
ArsI	GACNNNNNNTTYG	4 cut(s)	1560, 1592, 2882, 2914
AsiGI	ACCGGT	2 cut(s)	2444, 4959
Asp700I	GAANNNNTTC	3 cut(s)	231, 1200, 1809
AspLEI	GCGC	5 cut(s)	368, 1753, 1866, 3866, 3965
AvaI	CYCGRG	1 cut(s)	3372
AvaII	GGWCC	9 cut(s)	519, 759, 1717, 2247, 3646, 4006, 4068, 4203, 4757
BaeGI	GKGCMC	2 cut(s)	1350, 2516
BaeI	ACNNNNGTAYC	2 cut(s)	4437, 4470
BalI	TGGCCA	4 cut(s)	1986, 3204, 4133, 4571
BamHI	GGATCC	4 cut(s)	15, 1036, 1501, 4702
BanI	GGYRCC	4 cut(s)	2069, 2171, 2279, 5675
BanII	GRGCYC	6 cut(s)	2305, 2516, 3159, 4476, 4888, 4915
BarI	GAAGNNNNNNTAC	4 cut(s)	3492, 3524, 4647, 4679
BauI	CACGAG	3 cut(s)	3845, 4111, 4683
BbsI	GAAGAC	3 cut(s)	2015, 3218, 4269
Bbv12I	GWGCWC	5 cut(s)	611, 1654, 1888, 2305, 3159
BbvCI	CCTCAGC	1 cut(s)	3720
BcgI	CGANNNNNNTGC	2 cut(s)	3940, 3974
BciVI	GTATCC	1 cut(s)	3336
BclI	TGATCA	1 cut(s)	2902
BcoDI	GTCTC	8 cut(s)	563, 1290, 1934, 2141, 2205, 2298, 2883, 5616
BcuI	ACTAGT	1 cut(s)	3452
BfaI	CTAG	9 cut(s)	314, 351, 2666, 3453, 3861, 3948, 4416, 5235, 5423
BfmI	CTRYAG	4 cut(s)	76, 1233, 1395, 2715
BfoI	RGCGCY	2 cut(s)	3867, 3966
BfrI	CTTAAG	1 cut(s)	4816
BfuAI	ACCTGC	5 cut(s)	1369, 2764, 4237, 5026, 5075
BfuI	GTATCC	1 cut(s)	3336
BglI	GCCNNNNNGGC	1 cut(s)	4160
BglII	AGATCT	4 cut(s)	316, 1969, 3039, 3431
BlpI	GCTNAGC	1 cut(s)	1368
BmcAI	AGTACT	3 cut(s)	3399, 4778, 5427
Bme18I	GGWCC	9 cut(s)	519, 759, 1717, 2247, 3646, 4006, 4068, 4203, 4757
BmeRI	GACNNNNNGTC	1 cut(s)	4621
BmeT110I	CYCGRG	1 cut(s)	3372
BmgBI	CACGTC	1 cut(s)	4129
BmrI	ACTGGG	3 cut(s)	426, 666, 5635
BmuI	ACTGGG	3 cut(s)	426, 666, 5635
BpiI	GAAGAC	3 cut(s)	2015, 3218, 4269
BpmI	CTGGAG	4 cut(s)	535, 775, 3075, 3617
Bpu10I	CCTNAGC	2 cut(s)	1800, 3720
Bpu1102I	GCTNAGC	1 cut(s)	1368
BpuEI	CTTGAG	4 cut(s)	187, 625, 873, 1676
Bsa29I	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
BsaAI	YACGTR	1 cut(s)	1440
BsaBI	GATNNNNATC	1 cut(s)	3807
BsaHI	GRCGYC	1 cut(s)	1543
BsaI	GGTCTC	2 cut(s)	2883, 5616
BsaWI	WCCGGW	2 cut(s)	2444, 4959
BsaXI	ACNNNNNCTCC	2 cut(s)	4097, 4127
Bse118I	RCCGGY	4 cut(s)	34, 2444, 4070, 4959
Bse3DI	GCAATG	3 cut(s)	3828, 4936, 5286
Bse8I	GATNNNNATC	1 cut(s)	3807
BseCI	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
BseJI	GATNNNNATC	1 cut(s)	3807
BseMI	GCAATG	3 cut(s)	3828, 4936, 5286
BseRI	GAGGAG	3 cut(s)	1325, 3548, 5604
BseSI	GKGCMC	2 cut(s)	1350, 2516
BseYI	CCCAGC	1 cut(s)	1106
BsgI	GTGCAG	1 cut(s)	1861
Bsh1236I	CGCG	1 cut(s)	5212
BshNI	GGYRCC	4 cut(s)	2069, 2171, 2279, 5675
BshTI	ACCGGT	2 cut(s)	2444, 4959
BshVI	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
BsiHKAI	GWGCWC	5 cut(s)	611, 1654, 1888, 2305, 3159
BsiHKCI	CYCGRG	1 cut(s)	3372
BsiSI	CCGG	5 cut(s)	35, 2445, 4071, 4160, 4960
BslFI	GGGAC	8 cut(s)	871, 2324, 2631, 2824, 3659, 4216, 4439, 4818
BsmAI	GTCTC	8 cut(s)	563, 1290, 1934, 2141, 2205, 2298, 2883, 5616
BsmFI	GGGAC	8 cut(s)	871, 2324, 2631, 2824, 3659, 4216, 4439, 4818
BsmI	GAATGC	1 cut(s)	5668
Bso31I	GGTCTC	2 cut(s)	2883, 5616
BsoBI	CYCGRG	1 cut(s)	3372
Bsp120I	GGGCCC	1 cut(s)	2512
Bsp1407I	TGTACA	1 cut(s)	167
Bsp1720I	GCTNAGC	1 cut(s)	1368
BspACI	CCGC	7 cut(s)	1278, 3176, 3613, 3652, 5212, 5320, 5352
BspDI	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
BspFNI	CGCG	1 cut(s)	5212
BspHI	TCATGA	3 cut(s)	937, 1635, 5445
BspMAI	CTGCAG	2 cut(s)	1237, 2719
BspMI	ACCTGC	5 cut(s)	1369, 2764, 4237, 5026, 5075
BspQI	GCTCTTC	2 cut(s)	2320, 4002
BspT107I	GGYRCC	4 cut(s)	2069, 2171, 2279, 5675
BspTI	CTTAAG	1 cut(s)	4816
BspTNI	GGTCTC	2 cut(s)	2883, 5616
BsrDI	GCAATG	3 cut(s)	3828, 4936, 5286
BsrFI	RCCGGY	4 cut(s)	34, 2444, 4070, 4959
BsrGI	TGTACA	1 cut(s)	167
BssAI	RCCGGY	4 cut(s)	34, 2444, 4070, 4959
BssNAI	GTATAC	1 cut(s)	5457
BssNI	GRCGYC	1 cut(s)	1543
BssSI	CACGAG	3 cut(s)	3845, 4111, 4683
BssT1I	CCWWGG	8 cut(s)	20, 3071, 3986, 4242, 4888, 4915, 4950, 5503
Bst1107I	GTATAC	1 cut(s)	5457
Bst2BI	CACGAG	3 cut(s)	3845, 4111, 4683
Bst6I	CTCTTC	9 cut(s)	213, 1921, 2320, 2733, 3551, 4002, 4650, 5403, 5652
BstACI	GRCGYC	1 cut(s)	1543
BstAFI	CTTAAG	1 cut(s)	4816
BstAUI	TGTACA	1 cut(s)	167
BstBAI	YACGTR	1 cut(s)	1440
BstC8I	GCNNGC	8 cut(s)	36, 1873, 1984, 3184, 3196, 3259, 3753, 4731
BstDSI	CCRYGG	1 cut(s)	3732
BstENI	CCTNNNNNAGG	2 cut(s)	514, 754
BstFNI	CGCG	1 cut(s)	5212
BstH2I	RGCGCY	2 cut(s)	3867, 3966
BstHHI	GCGC	5 cut(s)	368, 1753, 1866, 3866, 3965
BstMAI	GTCTC	8 cut(s)	563, 1290, 1934, 2141, 2205, 2298, 2883, 5616
BstNSI	RCATGY	5 cut(s)	2105, 2951, 4733, 4791, 5114
BstSFI	CTRYAG	4 cut(s)	76, 1233, 1395, 2715
BstSLI	GKGCMC	2 cut(s)	1350, 2516
BstSNI	TACGTA	1 cut(s)	1440
BstUI	CGCG	1 cut(s)	5212
BstV2I	GAAGAC	3 cut(s)	2015, 3218, 4269
BstXI	CCANNNNNNTGG	1 cut(s)	5607
BstZ17I	GTATAC	1 cut(s)	5457
Bsu15I	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
BsuI	GTATCC	1 cut(s)	3336
BsuTUI	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
BtgI	CCRYGG	1 cut(s)	3732
BtrI	CACGTC	1 cut(s)	4129
BtsI	GCAGTG	1 cut(s)	4059
BveI	ACCTGC	5 cut(s)	1369, 2764, 4237, 5026, 5075
Cac8I	GCNNGC	8 cut(s)	36, 1873, 1984, 3184, 3196, 3259, 3753, 4731
CaiI	CAGNNNCTG	2 cut(s)	2264, 4124
CciI	TCATGA	3 cut(s)	937, 1635, 5445
CfoI	GCGC	5 cut(s)	368, 1753, 1866, 3866, 3965
Cfr10I	RCCGGY	4 cut(s)	34, 2444, 4070, 4959
ClaI	ATCGAT	4 cut(s)	1300, 1905, 3275, 3607
CseI	GACGC	1 cut(s)	1551
CsiI	ACCWGGT	3 cut(s)	581, 2263, 3019
CspAI	ACCGGT	2 cut(s)	2444, 4959
CspCI	CAANNNNNGTGG	6 cut(s)	2193, 2228, 3171, 3206, 5283, 5318
DraI	TTTAAA	1 cut(s)	1725
DraIII	CACNNNGTG	2 cut(s)	4358, 5672
DrdI	GACNNNNNNGTC	2 cut(s)	865, 4246
DriI	GACNNNNNGTC	1 cut(s)	4621
DseDI	GACNNNNNNGTC	2 cut(s)	865, 4246
EaeI	YGGCCR	4 cut(s)	1984, 3202, 4131, 4569
Eam1104I	CTCTTC	9 cut(s)	213, 1921, 2320, 2733, 3551, 4002, 4650, 5403, 5652
Eam1105I	GACNNNNNGTC	1 cut(s)	4621
EarI	CTCTTC	9 cut(s)	213, 1921, 2320, 2733, 3551, 4002, 4650, 5403, 5652
Ecl136II	GAGCTC	2 cut(s)	2303, 3157
Eco105I	TACGTA	1 cut(s)	1440
Eco130I	CCWWGG	8 cut(s)	20, 3071, 3986, 4242, 4888, 4915, 4950, 5503
Eco24I	GRGCYC	6 cut(s)	2305, 2516, 3159, 4476, 4888, 4915
Eco31I	GGTCTC	2 cut(s)	2883, 5616
Eco32I	GATATC	1 cut(s)	5650
Eco47I	GGWCC	9 cut(s)	519, 759, 1717, 2247, 3646, 4006, 4068, 4203, 4757
Eco47III	AGCGCT	1 cut(s)	3865
Eco53kI	GAGCTC	2 cut(s)	2303, 3157
Eco57I	CTGAAG	5 cut(s)	2589, 3414, 3527, 4674, 5478
Eco88I	CYCGRG	1 cut(s)	3372
EcoICRI	GAGCTC	2 cut(s)	2303, 3157
EcoNI	CCTNNNNNAGG	2 cut(s)	514, 754
EcoO109I	RGGNCCY	3 cut(s)	2513, 2611, 4006
EcoRV	GATATC	1 cut(s)	5650
EcoT14I	CCWWGG	8 cut(s)	20, 3071, 3986, 4242, 4888, 4915, 4950, 5503
EcoT22I	ATGCAT	3 cut(s)	1532, 3274, 4605
EcoT38I	GRGCYC	6 cut(s)	2305, 2516, 3159, 4476, 4888, 4915
ErhI	CCWWGG	8 cut(s)	20, 3071, 3986, 4242, 4888, 4915, 4950, 5503
FalI	AAGNNNNNCTT	4 cut(s)	945, 977, 4726, 4758
FaqI	GGGAC	8 cut(s)	871, 2324, 2631, 2824, 3659, 4216, 4439, 4818
FauI	CCCGC	1 cut(s)	1271
FbaI	TGATCA	1 cut(s)	2902
FblI	GTMKAC	6 cut(s)	136, 2374, 3294, 4238, 4649, 5456
FriOI	GRGCYC	6 cut(s)	2305, 2516, 3159, 4476, 4888, 4915
FspBI	CTAG	9 cut(s)	314, 351, 2666, 3453, 3861, 3948, 4416, 5235, 5423
GlaI	GCGC	5 cut(s)	367, 1752, 1865, 3865, 3964
GsaI	CCCAGC	1 cut(s)	1110
GsuI	CTGGAG	4 cut(s)	535, 775, 3075, 3617
HaeII	RGCGCY	2 cut(s)	3867, 3966
HapII	CCGG	5 cut(s)	35, 2445, 4071, 4160, 4960
HgaI	GACGC	1 cut(s)	1551
HhaI	GCGC	5 cut(s)	368, 1753, 1866, 3866, 3965
Hin1I	GRCGYC	1 cut(s)	1543
Hin6I	GCGC	5 cut(s)	366, 1751, 1864, 3864, 3963
HinP1I	GCGC	5 cut(s)	366, 1751, 1864, 3864, 3963
HincII	GTYRAC	3 cut(s)	850, 1117, 4239
HindII	GTYRAC	3 cut(s)	850, 1117, 4239
HindIII	AAGCTT	2 cut(s)	3749, 5490
HpaII	CCGG	5 cut(s)	35, 2445, 4071, 4160, 4960
Hpy99I	CGWCG	2 cut(s)	845, 1605
HpyCH4IV	ACGT	4 cut(s)	1119, 1439, 4128, 5480
HpySE526I	ACGT	4 cut(s)	1119, 1439, 4128, 5480
Hsp92I	GRCGYC	1 cut(s)	1543
HspAI	GCGC	5 cut(s)	366, 1751, 1864, 3864, 3963
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	2902
LguI	GCTCTTC	2 cut(s)	2320, 4002
LmnI	GCTCC	7 cut(s)	1004, 1312, 2300, 3154, 4694, 4883, 4910
MabI	ACCWGGT	3 cut(s)	581, 2263, 3019
MaeI	CTAG	9 cut(s)	314, 351, 2666, 3453, 3861, 3948, 4416, 5235, 5423
MaeII	ACGT	4 cut(s)	1119, 1439, 4128, 5480
MfeI	CAATTG	2 cut(s)	4903, 5367
MlsI	TGGCCA	4 cut(s)	1986, 3204, 4133, 4571
MluNI	TGGCCA	4 cut(s)	1986, 3204, 4133, 4571
MlyI	GAGTC	5 cut(s)	194, 1292, 2351, 5051, 5181
MmeI	TCCRAC	6 cut(s)	1407, 2444, 4377, 5087, 5307, 5552
Mox20I	TGGCCA	4 cut(s)	1986, 3204, 4133, 4571
Mph1103I	ATGCAT	3 cut(s)	1532, 3274, 4605
MroNI	GCCGGC	1 cut(s)	34
MroXI	GAANNNNTTC	3 cut(s)	231, 1200, 1809
MscI	TGGCCA	4 cut(s)	1986, 3204, 4133, 4571
MslI	CAYNNNNRTG	5 cut(s)	1761, 2697, 2794, 4608, 5673
Msp20I	TGGCCA	4 cut(s)	1986, 3204, 4133, 4571
MspA1I	CMGCKG	3 cut(s)	1278, 3470, 3719
MspCI	CTTAAG	1 cut(s)	4816
MspI	CCGG	5 cut(s)	35, 2445, 4071, 4160, 4960
MunI	CAATTG	2 cut(s)	4903, 5367
Mva1269I	GAATGC	1 cut(s)	5668
MvnI	CGCG	1 cut(s)	5212
NaeI	GCCGGC	1 cut(s)	36
NgoMIV	GCCGGC	1 cut(s)	34
NmuCI	GTSAC	6 cut(s)	197, 2751, 2826, 4224, 4783, 4978
NsiI	ATGCAT	3 cut(s)	1532, 3274, 4605
NspI	RCATGY	5 cut(s)	2105, 2951, 4733, 4791, 5114
OliI	CACNNNNGTG	1 cut(s)	5673
PaeI	GCATGC	1 cut(s)	4733
PagI	TCATGA	3 cut(s)	937, 1635, 5445
PaqCI	CACCTGC	3 cut(s)	2764, 4237, 5026
PasI	CCCWGGG	2 cut(s)	2614, 4693
PciI	ACATGT	2 cut(s)	2947, 4787
PciSI	GCTCTTC	2 cut(s)	2320, 4002
PcsI	WCGNNNNNNNCGW	1 cut(s)	2884
PctI	GAATGC	1 cut(s)	5668
PdiI	GCCGGC	1 cut(s)	36
PdmI	GAANNNNTTC	3 cut(s)	231, 1200, 1809
PflMI	CCANNNNNTGG	2 cut(s)	3490, 3655
PfoI	TCCNGGA	3 cut(s)	512, 752, 3690
PinAI	ACCGGT	2 cut(s)	2444, 4959
PleI	GAGTC	5 cut(s)	194, 1291, 2351, 5050, 5181
PpsI	GAGTC	5 cut(s)	194, 1291, 2351, 5050, 5181
Ppu21I	YACGTR	1 cut(s)	1440
PpuMI	RGGWCCY	1 cut(s)	4006
PscI	ACATGT	2 cut(s)	2947, 4787
Psp124BI	GAGCTC	2 cut(s)	2305, 3159
Psp5II	RGGWCCY	1 cut(s)	4006
PspFI	CCCAGC	1 cut(s)	1106
PspOMI	GGGCCC	1 cut(s)	2512
PspPPI	RGGWCCY	1 cut(s)	4006
PstI	CTGCAG	2 cut(s)	1237, 2719
PstNI	CAGNNNCTG	2 cut(s)	2264, 4124
PvuII	CAGCTG	2 cut(s)	3470, 3719
RseI	CAYNNNNRTG	5 cut(s)	1761, 2697, 2794, 4608, 5673
SacI	GAGCTC	2 cut(s)	2305, 3159
SalI	GTCGAC	1 cut(s)	4237
SapI	GCTCTTC	2 cut(s)	2320, 4002
ScaI	AGTACT	3 cut(s)	3399, 4778, 5427
SchI	GAGTC	5 cut(s)	194, 1292, 2351, 5051, 5181
SexAI	ACCWGGT	3 cut(s)	581, 2263, 3019
SfcI	CTRYAG	4 cut(s)	76, 1233, 1395, 2715
SinI	GGWCC	9 cut(s)	519, 759, 1717, 2247, 3646, 4006, 4068, 4203, 4757
SmiMI	CAYNNNNRTG	5 cut(s)	1761, 2697, 2794, 4608, 5673
SmlI	CTYRAG	5 cut(s)	202, 604, 888, 1655, 4816
SmoI	CTYRAG	5 cut(s)	202, 604, 888, 1655, 4816
SnaBI	TACGTA	1 cut(s)	1440
SpeI	ACTAGT	1 cut(s)	3452
SphI	GCATGC	1 cut(s)	4733
SsiI	CCGC	7 cut(s)	1278, 3176, 3613, 3652, 5212, 5320, 5352
SspMI	CTAG	9 cut(s)	314, 351, 2666, 3453, 3861, 3948, 4416, 5235, 5423
SstI	GAGCTC	2 cut(s)	2305, 3159
StyI	CCWWGG	8 cut(s)	20, 3071, 3986, 4242, 4888, 4915, 4950, 5503
TaiI	ACGT	4 cut(s)	1122, 1442, 4131, 5483
TatI	WGTACW	6 cut(s)	167, 2051, 3397, 4776, 5425, 5633
TauI	GCSGC	2 cut(s)	3179, 5323
TseFI	GTSAC	6 cut(s)	197, 2751, 2826, 4224, 4783, 4978
Tsp45I	GTSAC	6 cut(s)	197, 2751, 2826, 4224, 4783, 4978
TspGWI	ACGGA	2 cut(s)	2739, 2868
Van91I	CCANNNNNTGG	2 cut(s)	3490, 3655
Vha464I	CTTAAG	1 cut(s)	4816
VpaK11BI	GGWCC	9 cut(s)	519, 759, 1717, 2247, 3646, 4006, 4068, 4203, 4757
XagI	CCTNNNNNAGG	2 cut(s)	514, 754
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	5 cut(s)	2105, 2951, 4733, 4791, 5114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4990
XmiI	GTMKAC	6 cut(s)	136, 2374, 3294, 4238, 4649, 5456
XmnI	GAANNNNTTC	3 cut(s)	231, 1200, 1809
XspI	CTAG	9 cut(s)	314, 351, 2666, 3453, 3861, 3948, 4416, 5235, 5423
ZrmI	AGTACT	3 cut(s)	3399, 4778, 5427
Zsp2I	ATGCAT	3 cut(s)	1532, 3274, 4605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.