Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005238

Physical Location & Seq

Genomic Coordinates Forward (+)

51337458 .. 51354082

Gene Structure 16625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0401900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4713 bp

ATGGCGTGGTTCAGTGGGAAAGTCTCGTTGGGGAACTTCCCCGATCTCGCCGGCGCTGTAAATAAGCTCCAGGAGAGCGTCAAGAACATCGAGAAGAATTTCGATACCGCCCTCGGGTTTGAAGAGAAGGAGAAGCTTGAATCCGCCAATGAAGCTTCAGGATTATGGCCTTCATCTACAGAAAGGAAAGCACTATTTGATCCTGTTATGTCCTTTATGGGGCAAAAGAATGAGGATGACACTGTTGAATCATCACAGAAAGCTGAGTCTTCTGAGGCTCCACCTAAGGTTGAGAAATCACCAGCAGAGCTTGAATCTTCACCGAAGGTTGAGATATCATCAGTGGAGCCTAAATCTCCACCTAAGGTTGAGAAATCGTCAGTGGAGCCTGAATCTCTACCTAAGGTTGAGAAATCATCAGTGGAGCCTGAATCTTCACCTAAGGTTGAGAAATCATCAGTGGAGCCTGAACCTCCACAATGTTCATCTGCGGTTGACGAAAAAGATGGGGTGAGTGAAACGTTACCACATTCTGCAACTGAACAGACTGCTGCTAAGGAGGAAAATGACGTTGCCAAGGAAAAAAAAGATGAAAATCATGCTGAGACTGCAGAAGAAACAAAGACTTTGTCATCAGAGCCTGAGAGATCAGAGTCTCAATCGCCCTCAGTGCCAGTTGAGGCAACTGAGCCTACCATGAGTGCCTCATCATCAGATTTTGTTGGTTCTCAAGAAGAAGACAATAAGATTTCAGTAGGGGGACCCTCAGAACTTTCAGAATCAGCTCAAGGAATGTCAGGAGCTGTTAATGTAGGTGAAGTAGAGGTGGGTAGTACTGCTCTGCACAGTGAGTCACATGATCATGCTGATGTGCATGAGAATGCGGATGCCCAGAAGGCACACAAAGAGAATGATAATGAAATTGTGACTCAGGCTGGAGATATTGCTGAAGTGGTTTCTATGGTCGAACCTGAAGAATCAACTGAGAGCCTGCCTCGAGATGTTGAGCCATCTGCTATTCACTCCGTTTCCACTGAGGTGACTCATAGCGCTGGTGGATCTCCTACCAACCAATTACCTAGTGTTTATACTTCCAATGAGGCTTCGGATGCGTCTTCCGAGTTAGTTTTCAAACAAAAGGATGCTATCATTGAGGAACCTGGAATTGGTCATCGAGTTGATGAGAATGAAACCAACTATAATGAGCAACGTCTGAGCTCAGGACAGAAGTCAGACTCTTCAGACACAGGAGCAAATGTCTCTGATGCTTCCAACGCTTTGCTTGAATTAGAGAAGGTGAAGAAGGAGATGAAAATGATGGAAGCTGCATTGCAAGGTGCTGCAAGACAGGCTCAGGCAAAAGCCGATGAGATTGCCAAGTTCATGAACGAAAATGAGCAATTAAAAACTGTGGTTGAGGATTTGAAGAGAAAATCCAGTGAAGCAGAAGTTGAGTCTCTGCGGGAGGAGTACCATAAAAGGGTTGCAACACTTGAAAGGAAGGTTTACGCTCTTACTAAGGAAAGGGACACGCTTCGAAGGGAGCAGAATAAGAAAAGTGATGCAGCTGCACTTTTGAAGGAAAAGGATGAAATAATTACTCAAGTTATGGCTGAAGGTGAAGAGCTTTCAAAAAAACAGGCTACTCAAGAAGGTCTCATTAGGAAACTAAGGGCTCAGATTAGAGAGTTCGAAGAAGAGAAGAAAGGGCTGACTACCAAGCTCCAGGTAGAAGAGAATAAAGTAGAGAGTATCAAGAGGGACAAGACAGCTACAGAAAAGTTGCTGCAGGAAACTATAGAAAAGCACCAAACAGAACTTGCAGCGCAGAAAGAGTATTATACTAATGCTTTGGCTGCTGCCAAGGAGGCAGAAGCAATGGCCGAGGCACGTGCTAACGATGAAGCCAGATCTGAACTGGAGAGTCGTCTAAGAGACGCTCAGGAGCGTGAAGCTATGCTAGTTCAGGCACTCGAAGAATTACGACAAACTCTAACTAGAACAGAACAGCAGGCAGTATTTAAAGAAGACATGCTTCGCCGGGACGTTGAGGATCTTCAAAAACGTTATCAAGCAAGTGAGCGGCGATGTGAGGAGTTGATCACGCAAGTACCAGAATCTACCAGGCCTCTTCTTAGGCAAATCGAAGCAATGCAGGAAACAACTTCCAGAAGGGCAGAAGCTTGGGCAGCTGTTGAGAGGTCTCTTACCAATCGACTACAGGAAGCAGAGGCCAAAGCTGCTGCTGCTGAGGAAAGAGAGCGATCGGTGAATGAACGCTTGTCTCAAACCTTATCTCGTATTAACGTTCTTGAGGCTCAGATTTCATGTCTTAGAGCCGAGCAATCCCAATTAAGTAAGTCTCTTGAAAAGGAGAGACAAAGAGCAGCTGAAAATAGGCAGGAGTACCTTGCTGCAAAGGAAGAAGCTGATACTCAAGAAGGCCGTGCAAACCAGCTTGAAGAAGAAATTCGTGAACTCAGGCGAAAACATAAGCAGGAGTTACAAGATGCTTTGATGCACAGGGAACTGCTACAGCAGGAGGTAGAAAGGGAGAAAGCTGCTAGGTTGGATTTGGAAAGGACATCTCGTGTCCGTTCTGCTACTGTATCTGATCAGACAACTATAACAAGGCAGAGTTCTGCTTTTGAGAATGGAAGCTTGAACCGGAAACTTTCAAGTGCTAGCAGCCTAGGGAGCATGGAGGAAAGCTATTTTTTACAAGCATCTCTGGACTCGTCTGATAGTTTCTCTGAGAGGAGAAATGCTGGGGAAGCAACCATGACTCCATACTATATGAAGAGCATGACGCCTAGTGCTTTTGAAGCTTCCCTTCGTCAGAAGGAGGGTGAACTTGCATCTTACATGTCTCGTTTGGCATCCATGGAATCTATTCGCGATTCTCTCGCAGAGGAGTTGGTCAAAATGACAGAACAGTGTGAAAAGTTACGAGCAGAGGCTGGCATGTTACCTGGCATCAGAGCAGAGCTAGATGCACTAAGGAGGAGGCATTCTGCTGCACTGGAGCTGATGGGTGAACGAGATGAGGAGCTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAGATGTACAGAGAGCAAGTAAACTTGCTTGTGAACAAGTCTGCTGGAAAGTTCTCTGCGTCCAGTTTTGGACAAGGTTTCTATAAGTTTGCTATGCGGGGTCGTCATGTTGATGCCTACTCGGCGTACAAGCGTGTCACGTCGAGGGATGCTGAGGCTTATGATAGAGAAGAAGACTCAGAACAACTATTGAGTGGCAAAGATCTTGGAAACCCTTCATGGAGACGTTCTTTTCCCCATATGCTTGTAGCGGCTCTTTCTTCATTCTTATTTGGCTACCATCTCGGAGTGGTTAATGAAACACTAGATAGCATTTCTCTTGACCTTGGCTTTAGTGGGAATCCCTTCGCTAAGGGTTTAGTAGTCAGTACGTGTTTAGGGGCTGCTTTTGTTGGATCTCTATTTAGTGGCTGGATTCTAGATGGAGTTGGGCATCGAAGGGCATTCCAACTGTGTGCGCTTCCGATGATAATCGGTGCATCGATGAGTGCAACGACTCGCAGCCTATGGGGCATGATTCTAGGGCGGATATTTGTTGGAACTGGGATGGGCATTGGTCCTCCTGTTGCTGCTCTCTATGTGTCAGAGATTTCACCAGCTTTTGTAAGGGGTACATTTGGTAGCGTCACACAAATTGCTACATGTCTTGGATTGATGGGGGCTCTATTCATTGGACTTCCTTCCAAGGATATAGTGGGCTGGTGGCGGGTTTGTTTTTGGGTATCTACTGTTCCTGCTGCAGTGCTTGCTATTTGCATGGAGTTCTGTGCAGAGAGTCCTCACTGGCTTTTCAAGAGAGGAAGAGCCATTGAAGCTGAAGCTGAATTTGAGAAACTTTTAGGAGGAGCACATGTTAAATTTGCAATGGCAGAATTGTCAAAGTCTGAAAGAGGGGATGAATTGGATACAGTAAAGTTCTCAGAGCTACTGTATGGCCGCCATTTCAAAATGGTTTTCATTGGGTCTACCATTTTTGCTTTACAACAGCTGTCAGGCATAAATGCTGTATTCTATTTCTCCTCAACGGTCTTTAAAAGCTTCGGTGTGCCTTCAGATATTGCAAATGTATGTGTCGGAGTTGCAAATCTATCAGGGTCAATTGTTGCAATGATATTGATGGATAAGCTTGGAAGAAGGGTGCTTCTTCTTGGAAGTTTTACTGGCATGGCAGTGTCAATGAGTCTTCAAGTAAGTGGAGCAAGTTCTTATACTTCAGGATCTGGAGCACTGAGTCTATCTGTTGGTGGCATGCTGCTGTTTGTTTTGATGTTTTCTCTTGGAGCTGGTCCAGTGCCTAGTCTCCTACTATCAGAAATTCTTCCCAGCCGTATTAGAGCGAAGGCCATGGCAGTTTGCATGGCTGTGCATTGGGTGGTAAACTTCTTTGTTGGTCTATTCTTTTTGCCCTTGCTGGAGAAAATCGGGCCACAACTTCTGTATACAATCTTTGGTATTTTTTGTGTATTGGCTGTGATATTTGTGAAGAGAAATGTAGTGGAAACAAAAGGAAAGTCACTCCAAGAAATTGAAATTGCACTTATTCCACCACAGTTCTTCAACAAAATTAGATTACTTGTTTACACAAAGCTGAAGTCCTTTTGTATTGATGGAATCCAAGCCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009555 GO:0009987 GO:0010008 GO:0010118 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032501 GO:0032502 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0090332 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

1570

Amino Acids

173.31

Weight (kDa)

5.12

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TMF_DNA_bd	PF12329	521 - 592	8.3e-14	TATA element modulatory factor 1 DNA binding
TMF_TATA_bd	PF12325	936 - 1038	1e-27	TATA element modulatory factor 1 TATA binding
Sugar_tr	PF00083	1110 - 1540	4e-91	Sugar (and other) transporter
MFS_1	PF07690	1114 - 1454	2.8e-16	Major Facilitator Superfamily
MFS_1	PF07690	1367 - 1534	4e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14270 AT3G14270
fragaria_vesca	FvH4_6g35770 FvH4_6g35770 FvH4_6g35770
malus_domestica	MD09G1173300.v1.1 MD17G1154000.v1.1
prunus_persica	Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1 Prupe.3G031400_v2.0.a1
pyrus_communis	pycom09g09070 pycom17g14660
rosa_chinensis	RchiOBHm_Chr2g0147811
rosa_laevigata	RLG00000020280
rosa_multiflora	Rmu_sc0000308.1_g000046
rosa_roxburghii	Rroxscaffold_2G00099330
rosa_rugosa	Rorug02G0401800 Rorug02G0401800 Rorug02G0401800 Rorug02G0401900
rosa_samantha	Rh2AG459000 Rh2BG472300 Rh2CG446400 Rh2DG481300
rosa_wichuraiana	Rw2G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	2083
AccI	GTMKAC	3 cut(s)	3078, 4052, 4526
AccII	CGCG	1 cut(s)	2898
AclI	AACGTT	3 cut(s)	521, 2065, 2307
AclWI	GGATC	5 cut(s)	194, 1066, 2061, 3490, 4312
AcoI	YGGCCR	2 cut(s)	1881, 4021
AcsI	RAATTY	5 cut(s)	97, 2469, 3911, 3944, 4401
AcuI	CTGAAG	9 cut(s)	141, 969, 993, 1224, 1635, 3924, 4122, 4284, 4697
AcvI	CACGTG	1 cut(s)	1892
AcyI	GRCGYC	1 cut(s)	2810
AfaI	GTAC	8 cut(s)	835, 1472, 2112, 2408, 3095, 3215, 3457, 3700
AfeI	AGCGCT	1 cut(s)	1051
AfiI	CCNNNNNNNGG	4 cut(s)	114, 219, 1166, 1480
AflIII	ACRYGT	4 cut(s)	2865, 3458, 3728, 3937
AjiI	CACGTC	1 cut(s)	3228
AjnI	CCWGG	5 cut(s)	69, 1159, 1725, 2123, 2971
AjuI	GAANNNNNNNTTGG	4 cut(s)	11, 43, 1149, 1181
AleI	CACNNNNGTG	1 cut(s)	1037
Alw21I	GWGCWC	3 cut(s)	1220, 3937, 4315
AlwI	GGATC	5 cut(s)	194, 1066, 2061, 3490, 4312
AlwNI	CAGNNNCTG	4 cut(s)	641, 803, 2960, 4307
Ama87I	CYCGRG	2 cut(s)	113, 996
Aor51HI	AGCGCT	1 cut(s)	1051
AoxI	GGCC	8 cut(s)	167, 1881, 2126, 2232, 2443, 4021, 4428, 4511
ApoI	RAATTY	5 cut(s)	97, 2469, 3911, 3944, 4401
ArsI	GACNNNNNNTTYG	6 cut(s)	614, 646, 4583, 4615, 4664, 4696
Asp700I	GAANNNNTTC	6 cut(s)	98, 2469, 2892, 3301, 3431, 4404
AspA2I	CCTAGG	1 cut(s)	2692
AspLEI	GCGC	4 cut(s)	56, 1052, 1828, 3547
AspS9I	GGNCC	4 cut(s)	761, 3644, 4373, 4511
AsuC2I	CCSGG	1 cut(s)	2042
AsuII	TTCGAA	2 cut(s)	1537, 1692
AsuNHI	GCTAGC	1 cut(s)	2684
AvaI	CYCGRG	2 cut(s)	113, 996
AvaII	GGWCC	3 cut(s)	761, 3644, 4373
AvrII	CCTAGG	1 cut(s)	2692
AxyI	CCTNAGG	4 cut(s)	285, 363, 402, 441
BaeI	ACNNNNGTAYC	2 cut(s)	2094, 2127
BanII	GRGCYC	3 cut(s)	1220, 1678, 3751
BarI	GAAGNNNNNNTAC	2 cut(s)	3077, 3109
BauI	CACGAG	1 cut(s)	2589
BbrPI	CACGTG	1 cut(s)	1892
BbsI	GAAGAC	6 cut(s)	261, 744, 1107, 2034, 3267, 4262
Bbv12I	GWGCWC	3 cut(s)	1220, 3937, 4315
BbvCI	CCTCAGC	2 cut(s)	2250, 3240
BceAI	ACGGC	2 cut(s)	2430, 4398
BcgI	CGANNNNNNTGC	4 cut(s)	1355, 1389, 1874, 1908
BciT130I	CCWGG	5 cut(s)	71, 1161, 1727, 2125, 2973
BciVI	GTATCC	1 cut(s)	3985
BclI	TGATCA	3 cut(s)	859, 2100, 2614
BcnI	CCSGG	1 cut(s)	2042
BfmI	CTRYAG	8 cut(s)	177, 609, 1773, 1787, 1797, 2219, 2534, 3825
BfoI	RGCGCY	2 cut(s)	57, 1053
BfuI	GTATCC	1 cut(s)	3985
BglI	GCCNNNNNGGC	4 cut(s)	896, 1868, 3209, 3597
BglII	AGATCT	2 cut(s)	1910, 3289
BlnI	CCTAGG	1 cut(s)	2692
BmcAI	AGTACT	1 cut(s)	835
Bme1390I	CCNGG	6 cut(s)	71, 1161, 1727, 2042, 2125, 2973
Bme18I	GGWCC	3 cut(s)	761, 3644, 4373
BmeT110I	CYCGRG	2 cut(s)	113, 996
BmgBI	CACGTC	1 cut(s)	3228
BmgT120I	GGNCC	4 cut(s)	761, 3644, 4373, 4511
BmiI	GGNNCC	8 cut(s)	279, 348, 387, 426, 465, 762, 763, 1158
BmrFI	CCNGG	6 cut(s)	71, 1161, 1727, 2042, 2125, 2973
BmrI	ACTGGG	1 cut(s)	3639
BmtI	GCTAGC	1 cut(s)	2688
BmuI	ACTGGG	1 cut(s)	3639
BoxI	GACNNNNGTC	1 cut(s)	1228
BpiI	GAAGAC	6 cut(s)	261, 744, 1107, 2034, 3267, 4262
BplI	GAGNNNNNCTC	2 cut(s)	979, 1011
BpmI	CTGGAG	8 cut(s)	53, 957, 1709, 1940, 3044, 3074, 4329, 4520
Bpu10I	CCTNAGC	7 cut(s)	555, 1219, 1353, 1941, 2250, 3240, 3438
Bpu14I	TTCGAA	2 cut(s)	1537, 1692
BpuEI	CTTGAG	6 cut(s)	714, 771, 1587, 1632, 2333, 2421
BpuMI	CCSGG	1 cut(s)	2042
Bsa29I	ATCGAT	1 cut(s)	3569
BsaAI	YACGTR	2 cut(s)	1892, 3459
BsaBI	GATNNNNATC	2 cut(s)	594, 3557
BsaHI	GRCGYC	1 cut(s)	2810
BsaI	GGTCTC	2 cut(s)	1661, 2208
BsaJI	CCNNGG	9 cut(s)	112, 576, 1863, 1884, 2692, 2883, 3412, 3771, 4431
BsaWI	WCCGGW	1 cut(s)	2667
BsaXI	ACNNNNNCTCC	6 cut(s)	1242, 1272, 2770, 2800, 3924, 3954
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 219, 1166, 1480
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	9 cut(s)	674, 1437, 1923, 3027, 3150, 3634, 3875, 4252, 4376
Bse21I	CCTNAGG	4 cut(s)	285, 363, 402, 441
Bse3DI	GCAATG	5 cut(s)	1328, 1884, 2157, 3957, 4200
Bse8I	GATNNNNATC	2 cut(s)	594, 3557
BseBI	CCWGG	5 cut(s)	71, 1161, 1727, 2125, 2973
BseCI	ATCGAT	1 cut(s)	3569
BseDI	CCNNGG	9 cut(s)	112, 576, 1863, 1884, 2692, 2883, 3412, 3771, 4431
BseGI	GGATG	9 cut(s)	241, 892, 1114, 1147, 1594, 2879, 3241, 3639, 3988
BseJI	GATNNNNATC	2 cut(s)	594, 3557
BseLI	CCNNNNNNNGG	4 cut(s)	114, 219, 1166, 1480
BseMI	GCAATG	5 cut(s)	1328, 1884, 2157, 3957, 4200
BseNI	ACTGG	9 cut(s)	674, 1437, 1923, 3027, 3150, 3634, 3875, 4252, 4376
BseRI	GAGGAG	8 cut(s)	1481, 2108, 2773, 2927, 3019, 3062, 3945, 4096
BseYI	CCCAGC	2 cut(s)	2768, 4409
BsgI	GTGCAG	4 cut(s)	827, 1554, 3003, 3876
Bsh1236I	CGCG	1 cut(s)	2898
Bsh1285I	CGRYCG	1 cut(s)	2267
BshFI	GGCC	8 cut(s)	169, 1883, 2128, 2234, 2445, 4023, 4430, 4513
BshVI	ATCGAT	1 cut(s)	3569
BsiEI	CGRYCG	1 cut(s)	2267
BsiHKAI	GWGCWC	3 cut(s)	1220, 3937, 4315
BsiHKCI	CYCGRG	2 cut(s)	113, 996
BsiSI	CCGG	3 cut(s)	51, 2041, 2668
BslFI	GGGAC	4 cut(s)	774, 1541, 1775, 2057
BslI	CCNNNNNNNGG	4 cut(s)	114, 219, 1166, 1480
BsmBI	CGTCTC	2 cut(s)	1929, 3304
BsmFI	GGGAC	4 cut(s)	774, 1541, 1775, 2057
BsmI	GAATGC	3 cut(s)	886, 3010, 3530
BsnI	GGCC	8 cut(s)	169, 1883, 2128, 2234, 2445, 4023, 4430, 4513
Bso31I	GGTCTC	2 cut(s)	1661, 2208
BsoBI	CYCGRG	2 cut(s)	113, 996
Bsp119I	TTCGAA	2 cut(s)	1537, 1692
Bsp1286I	GDGCHC	5 cut(s)	1220, 1678, 3751, 3937, 4315
Bsp1407I	TGTACA	1 cut(s)	3093
Bsp19I	CCATGG	2 cut(s)	2883, 4431
Bsp68I	TCGCGA	1 cut(s)	2898
BspANI	GGCC	8 cut(s)	169, 1883, 2128, 2234, 2445, 4023, 4430, 4513
BspDI	ATCGAT	1 cut(s)	3569
BspFNI	CGCG	1 cut(s)	2898
BspHI	TCATGA	1 cut(s)	1383
BspLI	GGNNCC	8 cut(s)	279, 348, 387, 426, 465, 762, 763, 1158
BspMAI	CTGCAG	3 cut(s)	613, 1791, 3829
BspOI	GCTAGC	1 cut(s)	2688
BspPI	GGATC	5 cut(s)	194, 1066, 2061, 3490, 4312
BspQI	GCTCTTC	3 cut(s)	1617, 2795, 3883
BspT104I	TTCGAA	2 cut(s)	1537, 1692
BspTNI	GGTCTC	2 cut(s)	1661, 2208
BsrBI	CCGCTC	1 cut(s)	2083
BsrDI	GCAATG	5 cut(s)	1328, 1884, 2157, 3957, 4200
BsrFI	RCCGGY	1 cut(s)	50
BsrGI	TGTACA	1 cut(s)	3093
BsrI	ACTGG	9 cut(s)	674, 1437, 1923, 3027, 3150, 3634, 3875, 4252, 4376
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	9 cut(s)	112, 576, 1863, 1884, 2692, 2883, 3412, 3771, 4431
BssNAI	GTATAC	1 cut(s)	4527
BssNI	GRCGYC	1 cut(s)	2810
BssSI	CACGAG	1 cut(s)	2589
BssT1I	CCWWGG	7 cut(s)	576, 1863, 2692, 2883, 3412, 3771, 4431
Bst1107I	GTATAC	1 cut(s)	4527
Bst2BI	CACGAG	1 cut(s)	2589
Bst2UI	CCWGG	5 cut(s)	71, 1161, 1727, 2125, 2973
BstACI	GRCGYC	1 cut(s)	2810
BstAPI	GCANNNNNTGC	1 cut(s)	3833
BstAUI	TGTACA	1 cut(s)	3093
BstBAI	YACGTR	2 cut(s)	1892, 3459
BstBI	TTCGAA	2 cut(s)	1537, 1692
BstC8I	GCNNGC	7 cut(s)	52, 992, 2013, 2686, 2962, 3834, 4337
BstDSI	CCRYGG	2 cut(s)	2883, 4431
BstF5I	GGATG	9 cut(s)	241, 892, 1114, 1147, 1594, 2879, 3241, 3639, 3988
BstFNI	CGCG	1 cut(s)	2898
BstH2I	RGCGCY	2 cut(s)	57, 1053
BstHHI	GCGC	4 cut(s)	56, 1052, 1828, 3547
BstMCI	CGRYCG	1 cut(s)	2267
BstNI	CCWGG	5 cut(s)	71, 1161, 1727, 2125, 2973
BstNSI	RCATGY	6 cut(s)	2035, 2869, 2968, 3732, 3941, 4339
BstPAI	GACNNNNGTC	1 cut(s)	1228
BstSCI	CCNGG	6 cut(s)	69, 1159, 1725, 2040, 2123, 2971
BstSFI	CTRYAG	8 cut(s)	177, 609, 1773, 1787, 1797, 2219, 2534, 3825
BstUI	CGCG	1 cut(s)	2898
BstV2I	GAAGAC	6 cut(s)	261, 744, 1107, 2034, 3267, 4262
BstX2I	RGATCY	6 cut(s)	1058, 1910, 2053, 3289, 3482, 4304
BstYI	RGATCY	6 cut(s)	1058, 1910, 2053, 3289, 3482, 4304
BstZ17I	GTATAC	1 cut(s)	4527
Bsu15I	ATCGAT	1 cut(s)	3569
Bsu36I	CCTNAGG	4 cut(s)	285, 363, 402, 441
BsuI	GTATCC	1 cut(s)	3985
BsuRI	GGCC	8 cut(s)	169, 1883, 2128, 2234, 2445, 4023, 4430, 4513
BsuTUI	ATCGAT	1 cut(s)	3569
BtgI	CCRYGG	2 cut(s)	2883, 4431
BtgZI	GCGATG	1 cut(s)	2101
BtrI	CACGTC	1 cut(s)	3228
BtsCI	GGATG	9 cut(s)	241, 892, 1114, 1147, 1594, 2879, 3241, 3639, 3988
BtsI	GCAGTG	2 cut(s)	3834, 4263
BtuMI	TCGCGA	1 cut(s)	2898
Cac8I	GCNNGC	7 cut(s)	52, 992, 2013, 2686, 2962, 3834, 4337
CaiI	CAGNNNCTG	4 cut(s)	641, 803, 2960, 4307
CciI	TCATGA	1 cut(s)	1383
CfoI	GCGC	4 cut(s)	56, 1052, 1828, 3547
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	4 cut(s)	761, 3644, 4373, 4511
ClaI	ATCGAT	1 cut(s)	3569
CseI	GACGC	6 cut(s)	67, 1101, 1946, 2818, 3135, 3700
Csp6I	GTAC	8 cut(s)	834, 1471, 2111, 2407, 3094, 3214, 3456, 3699
CviQI	GTAC	8 cut(s)	834, 1471, 2111, 2407, 3094, 3214, 3456, 3699
DraI	TTTAAA	2 cut(s)	2023, 4120
EaeI	YGGCCR	2 cut(s)	1881, 4021
EciI	GGCGGA	2 cut(s)	133, 3628
Ecl136II	GAGCTC	1 cut(s)	1218
Eco130I	CCWWGG	7 cut(s)	576, 1863, 2692, 2883, 3412, 3771, 4431
Eco147I	AGGCCT	1 cut(s)	2128
Eco24I	GRGCYC	3 cut(s)	1220, 1678, 3751
Eco31I	GGTCTC	2 cut(s)	1661, 2208
Eco32I	GATATC	1 cut(s)	336
Eco47I	GGWCC	3 cut(s)	761, 3644, 4373
Eco47III	AGCGCT	1 cut(s)	1051
Eco53kI	GAGCTC	1 cut(s)	1218
Eco57I	CTGAAG	9 cut(s)	141, 969, 993, 1224, 1635, 3924, 4122, 4284, 4697
Eco72I	CACGTG	1 cut(s)	1892
Eco81I	CCTNAGG	4 cut(s)	285, 363, 402, 441
Eco88I	CYCGRG	2 cut(s)	113, 996
EcoICRI	GAGCTC	1 cut(s)	1218
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRII	CCWGG	5 cut(s)	69, 1159, 1725, 2123, 2971
EcoRV	GATATC	1 cut(s)	336
EcoT14I	CCWWGG	7 cut(s)	576, 1863, 2692, 2883, 3412, 3771, 4431
EcoT38I	GRGCYC	3 cut(s)	1220, 1678, 3751
ErhI	CCWWGG	7 cut(s)	576, 1863, 2692, 2883, 3412, 3771, 4431
Esp3I	CGTCTC	2 cut(s)	1929, 3304
FalI	AAGNNNNNCTT	4 cut(s)	2019, 2051, 2817, 2849
FaqI	GGGAC	4 cut(s)	774, 1541, 1775, 2057
FauI	CCCGC	3 cut(s)	1455, 3177, 3786
FauNDI	CATATG	1 cut(s)	3327
FbaI	TGATCA	3 cut(s)	859, 2100, 2614
FblI	GTMKAC	3 cut(s)	3078, 4052, 4526
FokI	GGATG	9 cut(s)	248, 899, 1121, 1154, 1601, 2866, 3248, 3646, 3995
FriOI	GRGCYC	3 cut(s)	1220, 1678, 3751
GlaI	GCGC	4 cut(s)	55, 1051, 1827, 3546
GsaI	CCCAGC	2 cut(s)	2772, 4413
GsuI	CTGGAG	8 cut(s)	53, 957, 1709, 1940, 3044, 3074, 4329, 4520
HaeII	RGCGCY	2 cut(s)	57, 1053
HaeIII	GGCC	8 cut(s)	169, 1883, 2128, 2234, 2445, 4023, 4430, 4513
HapII	CCGG	3 cut(s)	51, 2041, 2668
HgaI	GACGC	6 cut(s)	67, 1101, 1946, 2818, 3135, 3700
HhaI	GCGC	4 cut(s)	56, 1052, 1828, 3547
Hin1I	GRCGYC	1 cut(s)	2810
Hin6I	GCGC	4 cut(s)	54, 1050, 1826, 3545
HinP1I	GCGC	4 cut(s)	54, 1050, 1826, 3545
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	7 cut(s)	134, 153, 2181, 2659, 2826, 4123, 4211
HpaII	CCGG	3 cut(s)	51, 2041, 2668
Hpy99I	CGWCG	1 cut(s)	3232
Hsp92I	GRCGYC	1 cut(s)	2810
HspAI	GCGC	4 cut(s)	54, 1050, 1826, 3545
KflI	GGGWCCC	1 cut(s)	761
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	3 cut(s)	859, 2100, 2614
LguI	GCTCTTC	3 cut(s)	1617, 2795, 3883
MbiI	CCGCTC	1 cut(s)	2083
MfeI	CAATTG	1 cut(s)	4185
MflI	RGATCY	6 cut(s)	1058, 1910, 2053, 3289, 3482, 4304
MhlI	GDGCHC	5 cut(s)	1220, 1678, 3751, 3937, 4315
MmeI	TCCRAC	6 cut(s)	1296, 2550, 3460, 3559, 3604, 4141
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MroXI	GAANNNNTTC	6 cut(s)	98, 2469, 2892, 3301, 3431, 4404
MseI	TTAA	8 cut(s)	807, 1403, 2022, 2304, 2354, 3381, 3942, 4119
MslI	CAYNNNNRTG	7 cut(s)	861, 867, 879, 1037, 3198, 4256, 4448
MspA1I	CMGCKG	4 cut(s)	1568, 2192, 2390, 4075
MspI	CCGG	3 cut(s)	51, 2041, 2668
MspR9I	CCNGG	6 cut(s)	71, 1161, 1727, 2042, 2125, 2973
MunI	CAATTG	1 cut(s)	4185
Mva1269I	GAATGC	3 cut(s)	886, 3010, 3530
MvaI	CCWGG	5 cut(s)	71, 1161, 1727, 2125, 2973
MvnI	CGCG	1 cut(s)	2898
NaeI	GCCGGC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	2042
NcoI	CCATGG	2 cut(s)	2883, 4431
NdeI	CATATG	1 cut(s)	3327
NgoMIV	GCCGGC	1 cut(s)	50
NheI	GCTAGC	1 cut(s)	2684
NlaIV	GGNNCC	8 cut(s)	279, 348, 387, 426, 465, 762, 763, 1158
NmeAIII	GCCGAG	3 cut(s)	1909, 2365, 3188
NmuCI	GTSAC	6 cut(s)	852, 925, 1039, 3223, 3712, 4599
NruI	TCGCGA	1 cut(s)	2898
NspI	RCATGY	6 cut(s)	2035, 2869, 2968, 3732, 3941, 4339
NspV	TTCGAA	2 cut(s)	1537, 1692
OliI	CACNNNNGTG	1 cut(s)	1037
PaeI	GCATGC	1 cut(s)	4339
PaeR7I	CTCGAG	1 cut(s)	996
PagI	TCATGA	1 cut(s)	1383
PceI	AGGCCT	1 cut(s)	2128
PciI	ACATGT	3 cut(s)	2865, 3728, 3937
PciSI	GCTCTTC	3 cut(s)	1617, 2795, 3883
PctI	GAATGC	3 cut(s)	886, 3010, 3530
PdiI	GCCGGC	1 cut(s)	52
PdmI	GAANNNNTTC	6 cut(s)	98, 2469, 2892, 3301, 3431, 4404
PflFI	GACNNNGTC	1 cut(s)	628
PfoI	TCCNGGA	1 cut(s)	69
Ple19I	CGATCG	1 cut(s)	2267
PmaCI	CACGTG	1 cut(s)	1892
PmlI	CACGTG	1 cut(s)	1892
Ppu21I	YACGTR	2 cut(s)	1892, 3459
PpuMI	RGGWCCY	1 cut(s)	761
PscI	ACATGT	3 cut(s)	2865, 3728, 3937
PshAI	GACNNNNGTC	1 cut(s)	1228
Psp124BI	GAGCTC	1 cut(s)	1220
Psp1406I	AACGTT	3 cut(s)	521, 2065, 2307
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	5 cut(s)	69, 1159, 1725, 2123, 2971
PspCI	CACGTG	1 cut(s)	1892
PspFI	CCCAGC	2 cut(s)	2768, 4409
PspGI	CCWGG	5 cut(s)	69, 1159, 1725, 2123, 2971
PspN4I	GGNNCC	8 cut(s)	279, 348, 387, 426, 465, 762, 763, 1158
PspPI	GGNCC	4 cut(s)	761, 3644, 4373, 4511
PspPPI	RGGWCCY	1 cut(s)	761
PsrI	GAACNNNNNNTAC	2 cut(s)	3801, 3833
PstI	CTGCAG	3 cut(s)	613, 1791, 3829
PstNI	CAGNNNCTG	4 cut(s)	641, 803, 2960, 4307
PsuI	RGATCY	6 cut(s)	1058, 1910, 2053, 3289, 3482, 4304
PsyI	GACNNNGTC	1 cut(s)	628
PvuI	CGATCG	1 cut(s)	2267
PvuII	CAGCTG	4 cut(s)	1568, 2192, 2390, 4075
RruI	TCGCGA	1 cut(s)	2898
RsaI	GTAC	8 cut(s)	835, 1472, 2112, 2408, 3095, 3215, 3457, 3700
RsaNI	GTAC	8 cut(s)	834, 1471, 2111, 2407, 3094, 3214, 3456, 3699
RseI	CAYNNNNRTG	7 cut(s)	861, 867, 879, 1037, 3198, 4256, 4448
SacI	GAGCTC	1 cut(s)	1220
SapI	GCTCTTC	3 cut(s)	1617, 2795, 3883
SaqAI	TTAA	8 cut(s)	807, 1403, 2022, 2304, 2354, 3381, 3942, 4119
Sau96I	GGNCC	4 cut(s)	761, 3644, 4373, 4511
ScaI	AGTACT	1 cut(s)	835
ScrFI	CCNGG	6 cut(s)	71, 1161, 1727, 2042, 2125, 2973
SduI	GDGCHC	5 cut(s)	1220, 1678, 3751, 3937, 4315
SfcI	CTRYAG	8 cut(s)	177, 609, 1773, 1787, 1797, 2219, 2534, 3825
Sfr274I	CTCGAG	1 cut(s)	996
SfuI	TTCGAA	2 cut(s)	1537, 1692
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	3 cut(s)	761, 3644, 4373
SlaI	CTCGAG	1 cut(s)	996
SmiMI	CAYNNNNRTG	7 cut(s)	861, 867, 879, 1037, 3198, 4256, 4448
SmlI	CTYRAG	7 cut(s)	729, 786, 996, 1602, 1647, 2312, 2436
SmoI	CTYRAG	7 cut(s)	729, 786, 996, 1602, 1647, 2312, 2436
SphI	GCATGC	1 cut(s)	4339
SseBI	AGGCCT	1 cut(s)	2128
SstI	GAGCTC	1 cut(s)	1220
StuI	AGGCCT	1 cut(s)	2128
StyD4I	CCNGG	6 cut(s)	69, 1159, 1725, 2040, 2123, 2971
StyI	CCWWGG	7 cut(s)	576, 1863, 2692, 2883, 3412, 3771, 4431
TatI	WGTACW	2 cut(s)	833, 3093
TauI	GCSGC	3 cut(s)	2086, 3341, 4026
Tru1I	TTAA	8 cut(s)	807, 1403, 2022, 2304, 2354, 3381, 3942, 4119
Tru9I	TTAA	8 cut(s)	807, 1403, 2022, 2304, 2354, 3381, 3942, 4119
TseFI	GTSAC	6 cut(s)	852, 925, 1039, 3223, 3712, 4599
Tsp45I	GTSAC	6 cut(s)	852, 925, 1039, 3223, 3712, 4599
TspGWI	ACGGA	2 cut(s)	1015, 2585
Tth111I	GACNNNGTC	1 cut(s)	628
VpaK11BI	GGWCC	3 cut(s)	761, 3644, 4373
XapI	RAATTY	5 cut(s)	97, 2469, 3911, 3944, 4401
XbaI	TCTAGA	1 cut(s)	3505
XceI	RCATGY	6 cut(s)	2035, 2869, 2968, 3732, 3941, 4339
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1915, 3778
XhoI	CTCGAG	1 cut(s)	996
XmaJI	CCTAGG	1 cut(s)	2692
XmiI	GTMKAC	3 cut(s)	3078, 4052, 4526
XmnI	GAANNNNTTC	6 cut(s)	98, 2469, 2892, 3301, 3431, 4404
ZrmI	AGTACT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.