Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000959

Physical Location & Seq

Genomic Coordinates Forward (+)

51313866 .. 51316506

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0401800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGATAGCAATTTCTCAGGGGCGATTGCAAAATTGAGAGGAGCGTCGGACGATGAGATCTCGATGGGGCAGCCCAATAGCTCCGAGGCCAAAACAAAGGTCTCACCGATCACCGATCATACTGATTTGGTCCTGGAGGAGCCAGATCGCCTAGGGAAAAAACCCGGCAAGGACATTGCACACCCCGCAAAACCAGACATCAGTGCTGCTGCAGCCAGTCTCAACCCTAAATTAGCCGCCCTTTCTCTGGGAAACAAAGGGAAACGGTTGTGCTCTGGACCAAAAGGTCGTATTTCTCGAAGGCGCAATCGAAAAGATAAGGGAGCGTCCATTGGTCTAGGCATCAAGTCCAAAGAACCAAAGGCTACTGGAGTGTCAGACAAAAACAATAAAAAAGTGGCTGCAGTTGCTTCTTCTACTTCTGTCGTCACCGAAAGAGGAGGATGTCAGATCTGCGGTCATGATCACCAGCACATTCGTTGCCCATACTTGGAGTTGGTTCCACCTGGCGGAACTGTTGGCCCTGACTATCTAGTAGTATGTGGCGAATGTGGTTATGAGTTAAAGCAGCCTATTCCGGCTTGTTGTTGGTCGTGCGGTTATTGGGGAGGACGTGTGGTGGGGGTGTCTACCTTTGATTATAGATTTCGTTACTACCTAGATGAATTTTATATAGAAGAACCAGTTACGGCAGAGTACATGGACCCAGACAAGTACCCAGAACAAAAACCTGAAGAACCAGTTACGGCAGAGTACATGGACCCAGACAAGTACACACAACAAAAACCTGTAATGGCACAGTCCTCCTCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009555 GO:0009987 GO:0010008 GO:0010118 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032501 GO:0032502 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0090332 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

271

Amino Acids

29.43

Weight (kDa)

7.99

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53870 AT1G53870 AT1G53870 AT1G53870 AT1G53875 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT3G14260
fragaria_vesca	FvH4_5g02020 FvH4_6g35760
malus_domestica	MD06G1080400.v1.1 MD06G1080500.v1.1 MD06G1080600.v1.1 MD14G1099500.v1.1 MD14G1099700.v1.1 MD14G1101500.v1.1 MD17G1153800.v1.1
prunus_persica	Prupe.5G096400_v2.0.a1 Prupe.5G096500_v2.0.a1 Prupe.5G096600_v2.0.a1 Prupe.5G096700_v2.0.a1
pyrus_communis	pycom06g07730 pycom06g07750 pycom09g09080 pycom14g09790 pycom17g14650
rosa_chinensis	RchiOBHm_Chr2g0147771 RchiOBHm_Chr7g0198321 RchiOBHm_Chr7g0198341
rosa_laevigata	RLG00000003874 RLG00000003875 RLG00000003876 RLG00000020277
rosa_multiflora	Rmu_sc0000308.1_g000037 Rmu_sc0001250.1_g000024 Rmu_sc0001250.1_g000034
rosa_roxburghii	Rroxscaffold_3G00257820 Rroxscaffold_3G00257830 Rroxscaffold_3G00257840
rosa_rugosa	Rorug02G0401800 Rorug07G0046900 Rorug07G0047100 Rorug07G0047200
rosa_samantha	Rh2AG458900 Rh2BG472000 Rh2CG446200 Rh2DG480900 Rh7AG170400 Rh7AG170500 Rh7AG170600 Rh7BG173500 Rh7BG173600 Rh7BG173700 Rh7CG180700 Rh7CG180800 Rh7CG180900 Rh7DG172600 Rh7DG172800
rosa_wichuraiana	Rw2G037520 Rw7G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	629
AciI	CCGC	5 cut(s)	186, 237, 456, 510, 597
AcsI	RAATTY	1 cut(s)	665
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	4 cut(s)	698, 716, 755, 773
AfiI	CCNNNNNNNGG	3 cut(s)	247, 490, 509
AflIII	ACRYGT	1 cut(s)	613
AjiI	CACGTC	1 cut(s)	614
AjnI	CCWGG	2 cut(s)	132, 505
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	2 cut(s)	106, 224
AoxI	GGCC	2 cut(s)	87, 520
ApeKI	GCWGC	6 cut(s)	70, 206, 209, 212, 401, 568
ApoI	RAATTY	1 cut(s)	665
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AspA2I	CCTAGG	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	5 cut(s)	130, 278, 521, 703, 760
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	4 cut(s)	96, 103, 421, 458
AvaII	GGWCC	4 cut(s)	130, 278, 703, 760
AvrII	CCTAGG	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	6 cut(s)	82, 193, 196, 224, 388, 580
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	2 cut(s)	705, 762
BciT130I	CCWGG	2 cut(s)	134, 507
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	106, 224
BfaI	CTAG	4 cut(s)	152, 338, 533, 659
BfmI	CTRYAG	2 cut(s)	210, 402
BglII	AGATCT	2 cut(s)	57, 450
BisI	GCNGC	7 cut(s)	71, 207, 210, 213, 237, 402, 569
BlnI	CCTAGG	1 cut(s)	151
BlsI	GCNGC	7 cut(s)	72, 208, 211, 214, 238, 403, 570
Bme1390I	CCNGG	3 cut(s)	134, 165, 507
Bme18I	GGWCC	4 cut(s)	130, 278, 703, 760
BmgBI	CACGTC	1 cut(s)	614
BmgT120I	GGNCC	5 cut(s)	130, 278, 521, 703, 760
BmiI	GGNNCC	4 cut(s)	141, 501, 705, 762
BmrFI	CCNGG	3 cut(s)	134, 165, 507
BmsI	GCATC	1 cut(s)	351
BpmI	CTGGAG	2 cut(s)	155, 390
BpuMI	CCSGG	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	84, 151
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 490, 509
Bse1I	ACTGG	4 cut(s)	216, 373, 683, 740
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	134, 507
BseDI	CCNNGG	2 cut(s)	84, 151
BseGI	GGATG	1 cut(s)	449
BseLI	CCNNNNNNNGG	3 cut(s)	247, 490, 509
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	4 cut(s)	216, 373, 683, 740
BseRI	GAGGAG	4 cut(s)	54, 152, 453, 796
BseXI	GCAGC	6 cut(s)	82, 193, 196, 224, 388, 580
BshFI	GGCC	2 cut(s)	89, 522
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	165, 578
BslI	CCNNNNNNNGG	3 cut(s)	247, 490, 509
BsmAI	GTCTC	2 cut(s)	106, 224
BsnI	GGCC	2 cut(s)	89, 522
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	6 cut(s)	57, 108, 115, 145, 450, 463
BspACI	CCGC	5 cut(s)	186, 237, 456, 510, 597
BspANI	GGCC	2 cut(s)	89, 522
BspCNI	CTCAG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	4 cut(s)	141, 501, 705, 762
BspMAI	CTGCAG	2 cut(s)	214, 406
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	4 cut(s)	216, 373, 683, 740
BssECI	CCNNGG	2 cut(s)	84, 151
BssMI	GATC	6 cut(s)	57, 108, 115, 145, 450, 463
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	2 cut(s)	134, 507
Bst4CI	ACNGT	3 cut(s)	267, 517, 801
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	6 cut(s)	60, 111, 118, 148, 453, 466
BstMAI	GTCTC	2 cut(s)	106, 224
BstMBI	GATC	6 cut(s)	57, 108, 115, 145, 450, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 212, 407
BstNI	CCWGG	2 cut(s)	134, 507
BstSCI	CCNGG	3 cut(s)	132, 163, 505
BstSFI	CTRYAG	2 cut(s)	210, 402
BstV1I	GCAGC	6 cut(s)	82, 193, 196, 224, 388, 580
BstX2I	RGATCY	2 cut(s)	57, 450
BstYI	RGATCY	2 cut(s)	57, 450
BsuRI	GGCC	2 cut(s)	89, 522
BtrI	CACGTC	1 cut(s)	614
BtsCI	GGATG	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	208
CciI	TCATGA	1 cut(s)	460
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	5 cut(s)	130, 278, 521, 703, 760
CseI	GACGC	2 cut(s)	33, 315
Csp6I	GTAC	4 cut(s)	697, 715, 754, 772
CviAII	CATG	3 cut(s)	461, 700, 757
CviQI	GTAC	4 cut(s)	697, 715, 754, 772
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	6 cut(s)	59, 110, 117, 147, 452, 465
DpnII	GATC	6 cut(s)	57, 108, 115, 145, 450, 463
DrdI	GACNNNNNNGTC	1 cut(s)	285
DseDI	GACNNNNNNGTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	4 cut(s)	130, 278, 703, 760
Eco57I	CTGAAG	1 cut(s)	753
EcoRII	CCWGG	2 cut(s)	132, 505
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	3 cut(s)	464, 703, 760
FatI	CATG	3 cut(s)	460, 699, 756
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	629
Fnu4HI	GCNGC	7 cut(s)	71, 207, 210, 213, 237, 402, 569
FokI	GGATG	1 cut(s)	456
Fsp4HI	GCNGC	7 cut(s)	71, 207, 210, 213, 237, 402, 569
FspBI	CTAG	4 cut(s)	152, 338, 533, 659
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	7 cut(s)	71, 207, 210, 213, 237, 402, 569
GsuI	CTGGAG	2 cut(s)	155, 390
HaeIII	GGCC	2 cut(s)	89, 522
HapII	CCGG	2 cut(s)	165, 578
HgaI	GACGC	2 cut(s)	33, 315
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	3 cut(s)	464, 703, 760
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HpaII	CCGG	2 cut(s)	165, 578
HphI	GGTGA	4 cut(s)	96, 103, 421, 458
Hpy166II	GTNNAC	2 cut(s)	630, 774
Hpy188I	TCNGA	4 cut(s)	49, 85, 379, 450
Hpy188III	TCNNGA	4 cut(s)	61, 276, 297, 461
Hpy8I	GTNNAC	2 cut(s)	630, 774
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	3 cut(s)	267, 517, 801
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	4 cut(s)	29, 179, 212, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 212, 407
HpyF3I	CTNAG	1 cut(s)	16
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	3 cut(s)	464, 703, 760
HspAI	GCGC	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	6 cut(s)	57, 108, 115, 145, 450, 463
LmnI	GCTCC	4 cut(s)	41, 86, 139, 323
Lsp1109I	GCAGC	6 cut(s)	82, 193, 196, 224, 388, 580
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	4 cut(s)	152, 338, 533, 659
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	4 cut(s)	427, 650, 685, 742
MalI	GATC	6 cut(s)	59, 110, 117, 147, 452, 465
MboI	GATC	6 cut(s)	57, 108, 115, 145, 450, 463
MboII	GAAGA	3 cut(s)	405, 689, 746
MflI	RGATCY	2 cut(s)	57, 450
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	4 cut(s)	10, 32, 230, 665
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	7 cut(s)	32, 79, 130, 431, 434, 602, 814
MseI	TTAA	1 cut(s)	563
MspI	CCGG	2 cut(s)	165, 578
MspR9I	CCNGG	3 cut(s)	134, 165, 507
MvaI	CCWGG	2 cut(s)	134, 507
MwoI	GCNNNNNNNGC	3 cut(s)	185, 212, 407
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	6 cut(s)	57, 108, 115, 145, 450, 463
NlaIII	CATG	3 cut(s)	464, 703, 760
NlaIV	GGNNCC	4 cut(s)	141, 501, 705, 762
NmuCI	GTSAC	1 cut(s)	427
PagI	TCATGA	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	7 cut(s)	72, 208, 211, 214, 238, 403, 570
Psp6I	CCWGG	2 cut(s)	132, 505
PspGI	CCWGG	2 cut(s)	132, 505
PspN4I	GGNNCC	4 cut(s)	141, 501, 705, 762
PspPI	GGNCC	5 cut(s)	130, 278, 521, 703, 760
PstI	CTGCAG	2 cut(s)	214, 406
PsuI	RGATCY	2 cut(s)	57, 450
RsaI	GTAC	4 cut(s)	698, 716, 755, 773
RsaNI	GTAC	4 cut(s)	697, 715, 754, 772
SaqAI	TTAA	1 cut(s)	563
SatI	GCNGC	7 cut(s)	71, 207, 210, 213, 237, 402, 569
Sau3AI	GATC	6 cut(s)	57, 108, 115, 145, 450, 463
Sau96I	GGNCC	5 cut(s)	130, 278, 521, 703, 760
ScrFI	CCNGG	3 cut(s)	134, 165, 507
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	9 cut(s)	83, 102, 289, 508, 616, 635, 660, 733, 790
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	2 cut(s)	210, 402
SinI	GGWCC	4 cut(s)	130, 278, 703, 760
Sse9I	AATT	4 cut(s)	10, 32, 230, 665
SsiI	CCGC	5 cut(s)	186, 237, 456, 510, 597
SspMI	CTAG	4 cut(s)	152, 338, 533, 659
StyD4I	CCNGG	3 cut(s)	132, 163, 505
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	3 cut(s)	267, 517, 801
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	3 cut(s)	62, 298, 310
TasI	AATT	4 cut(s)	10, 32, 230, 665
TatI	WGTACW	3 cut(s)	696, 753, 771
TauI	GCSGC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	6 cut(s)	70, 206, 209, 212, 401, 568
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	678
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	4 cut(s)	130, 278, 703, 760
XapI	RAATTY	1 cut(s)	665
XmaJI	CCTAGG	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	629
XspI	CTAG	4 cut(s)	152, 338, 533, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.