Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000959

Physical Location & Seq

Genomic Coordinates Forward (+)

20124706 .. 20126525

Gene Structure 1820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53890.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCAAATATACAATCCTATTTCTCCGGTGAAAACCATGGTGAAGATTTATCCTCACCTGGCGTTTCCGGTGGATATGGACGTCGTACAAGACAAGATTTTGCCCTACTTAACGACGGAGCAAGAGAGGTTCACGATTTGGATGAAATCTTTGGTGTTCAATAGCAAAGGCTGCACAGTTTTTGATTCCAAAGGAAACTTAATCTATCGAGTGGATAATTATGATTCCAAGAGTTGGAGTAATGAAGTTTACTTTATGGATTTAAACGGCAAAATTTTGTTTACTTTACGTCAAAAGAAACTGGGATTCTTCAAATCTTGGGAAGGATATAACTCAACCGGGACCAGATTTCGACTAAGAAAGATTTTCAAGATTTTGCCAAGAGAATCATCTTCGTCTTACAAAGTTGTAATGGGATCACGCATAGTTGATGGTGATCAACAATCTTGTTATAAGATTGTAAATCGTGGATCAGTTTTCGCAATCAAGGATGGATCGGGAAGATTAATGGCAGAAGTTAAAAACAAACTATCGGATATTAGTGGTTTGGATCTTGGAGATGATGTTTTGACAATGATGGTGGAGCCACAACTAGATCATTCTTTAATAATGGGTATTGTTATAGCTTATAAACTTACCAAATGTAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B LOR

Protein Analysis

217

Amino Acids

24.9

Weight (kDa)

9.37

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	43 - 194	2.9e-22	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53870 AT1G53870 AT1G53870 AT1G53870 AT1G53875 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT3G14260
fragaria_vesca	FvH4_5g02020 FvH4_6g35760
malus_domestica	MD06G1080400.v1.1 MD06G1080500.v1.1 MD06G1080600.v1.1 MD14G1099500.v1.1 MD14G1099700.v1.1 MD14G1101500.v1.1 MD17G1153800.v1.1
prunus_persica	Prupe.5G096400_v2.0.a1 Prupe.5G096500_v2.0.a1 Prupe.5G096600_v2.0.a1 Prupe.5G096700_v2.0.a1
pyrus_communis	pycom06g07730 pycom06g07750 pycom09g09080 pycom14g09790 pycom17g14650
rosa_chinensis	RchiOBHm_Chr2g0147771 RchiOBHm_Chr7g0198321 RchiOBHm_Chr7g0198341
rosa_laevigata	RLG00000003874 RLG00000003875 RLG00000003876 RLG00000020277
rosa_multiflora	Rmu_sc0000308.1_g000037 Rmu_sc0001250.1_g000024 Rmu_sc0001250.1_g000034
rosa_roxburghii	Rroxscaffold_3G00257820 Rroxscaffold_3G00257830 Rroxscaffold_3G00257840
rosa_rugosa	Rorug02G0401800 Rorug07G0046900 Rorug07G0047100 Rorug07G0047200
rosa_samantha	Rh2AG458900 Rh2BG472000 Rh2CG446200 Rh2DG480900 Rh7AG170400 Rh7AG170500 Rh7AG170600 Rh7BG173500 Rh7BG173600 Rh7BG173700 Rh7CG180700 Rh7CG180800 Rh7CG180900 Rh7DG172600 Rh7DG172800
rosa_wichuraiana	Rw2G037520 Rw7G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	453, 630
AatII	GACGTC	1 cut(s)	84
AccB7I	CCANNNNNTGG	1 cut(s)	234
AclWI	GGATC	4 cut(s)	424, 478, 502, 558
AcsI	RAATTY	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	160, 313, 370
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	1 cut(s)	626
AluI	AGCT	1 cut(s)	626
AlwI	GGATC	4 cut(s)	424, 478, 502, 558
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	273
AseI	ATTAAT	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	342
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	4 cut(s)	40, 47, 52, 446
AvaII	GGWCC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	3 cut(s)	425, 485, 571
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	59
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	340
BfaI	CTAG	1 cut(s)	593
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
Bme1390I	CCNGG	2 cut(s)	59, 340
Bme18I	GGWCC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	2 cut(s)	343, 585
BmrFI	CCNGG	2 cut(s)	59, 340
BmrI	ACTGGG	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	340
BsaBI	GATNNNNATC	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	2 cut(s)	25, 67
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	147, 496
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	157
BsiSI	CCGG	3 cut(s)	26, 68, 339
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	355
Bsp143I	GATC	6 cut(s)	416, 436, 470, 494, 550, 595
Bsp19I	CCATGG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	343, 585
BspPI	GGATC	4 cut(s)	424, 478, 502, 558
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	6 cut(s)	416, 436, 470, 494, 550, 595
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	356
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	147, 496
BstKTI	GATC	6 cut(s)	419, 439, 473, 497, 553, 598
BstMBI	GATC	6 cut(s)	416, 436, 470, 494, 550, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	57, 338
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	147, 496
Cfr13I	GGNCC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	86
CspCI	CAANNNNNGTGG	2 cut(s)	561, 596
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	3 cut(s)	171, 586, 626
CviKI_1	RGCY	3 cut(s)	171, 586, 626
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	6 cut(s)	418, 438, 472, 496, 552, 597
DpnII	GATC	6 cut(s)	416, 436, 470, 494, 550, 595
DraI	TTTAAA	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	40
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	2 cut(s)	154, 503
Fsp4HI	GCNGC	1 cut(s)	172
FspBI	CTAG	1 cut(s)	593
GluI	GCNGC	1 cut(s)	172
HapII	CCGG	3 cut(s)	26, 68, 339
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	40
HinfI	GANTC	4 cut(s)	185, 224, 306, 386
HpaII	CCGG	3 cut(s)	26, 68, 339
HphI	GGTGA	4 cut(s)	40, 47, 52, 446
Hpy166II	GTNNAC	3 cut(s)	132, 250, 282
Hpy188I	TCNGA	1 cut(s)	535
Hpy188III	TCNNGA	3 cut(s)	133, 370, 498
Hpy8I	GTNNAC	3 cut(s)	132, 250, 282
Hpy99I	CGWCG	2 cut(s)	86, 118
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	2 cut(s)	81, 289
HpyCH4V	TGCA	2 cut(s)	4, 174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	1 cut(s)	356
HpySE526I	ACGT	2 cut(s)	81, 289
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	6 cut(s)	416, 436, 470, 494, 550, 595
LmnI	GCTCC	2 cut(s)	118, 583
LpnPI	CCDG	7 cut(s)	39, 44, 71, 81, 287, 352, 358
Lsp1109I	GCAGC	1 cut(s)	158
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	2 cut(s)	81, 289
MalI	GATC	6 cut(s)	418, 438, 472, 496, 552, 597
MboI	GATC	6 cut(s)	416, 436, 470, 494, 550, 595
MboII	GAAGA	4 cut(s)	55, 301, 384, 513
MflI	RGATCY	1 cut(s)	550
MluCI	AATT	3 cut(s)	217, 273, 647
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	2 cut(s)	63, 120
MseI	TTAA	6 cut(s)	110, 200, 263, 506, 519, 605
MspI	CCGG	3 cut(s)	26, 68, 339
MspR9I	CCNGG	2 cut(s)	59, 340
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	171
NciI	CCSGG	1 cut(s)	340
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	6 cut(s)	416, 436, 470, 494, 550, 595
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	2 cut(s)	343, 585
PfeI	GAWTC	4 cut(s)	185, 224, 306, 386
PflMI	CCANNNNNTGG	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	173
PshBI	ATTAAT	1 cut(s)	506
PsiI	TTATAA	2 cut(s)	453, 630
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	343, 585
PspPI	GGNCC	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SaqAI	TTAA	6 cut(s)	110, 200, 263, 506, 519, 605
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	6 cut(s)	416, 436, 470, 494, 550, 595
Sau96I	GGNCC	1 cut(s)	342
ScrFI	CCNGG	2 cut(s)	59, 340
SetI	ASST	5 cut(s)	60, 84, 131, 292, 628
SinI	GGWCC	1 cut(s)	342
Sse9I	AATT	3 cut(s)	217, 273, 647
SspMI	CTAG	1 cut(s)	593
StyD4I	CCNGG	2 cut(s)	57, 338
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	2 cut(s)	84, 292
TaqI	TCGA	2 cut(s)	208, 352
TasI	AATT	3 cut(s)	217, 273, 647
TfiI	GAWTC	4 cut(s)	185, 224, 306, 386
Tru1I	TTAA	6 cut(s)	110, 200, 263, 506, 519, 605
Tru9I	TTAA	6 cut(s)	110, 200, 263, 506, 519, 605
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	2 cut(s)	158, 258
TspGWI	ACGGA	1 cut(s)	131
Van91I	CCANNNNNTGG	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	342
VspI	ATTAAT	1 cut(s)	506
XapI	RAATTY	1 cut(s)	273
XspI	CTAG	1 cut(s)	593
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.