Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000959

Physical Location & Seq

Genomic Coordinates Reverse (-)

61870395 .. 61871181

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G037520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCAAAGGTTCATCCCCAAGCACCACTTTCTTCTTCATCCCCTGGCTACTTCACTTCAAAACAAGAAACATTCACTATATGGATGAAGTCTCTCATATTGAATGGCCATGGTTGCACTGTTTTCGATTCTAACGGTCAGATCGTGTATCGTGTAGATAATTACGACTCTAGAGGTAGAGCTAAAGTTCATCTTATGGATTTGAAAGGCCAAATCCTATTCACCATACTAAGAAAGAAATCCAAATTTCTTGGTGTCTGGGAGGGATACAGATCCAGTAATGGTAAAGAGATCAACCTGAAAAATACACCCAGGTTTCAAGTTAGGAGAAGCTTTAAAGGCAAGTCAGCATGTAAAGTCATCGTGGGACTAGACAAGAATCAAATACAGCAATACAGAATAGAGAGCTGGAGTAAAGGAAAGTCAGCCTGCAAGATACTAGACAAGTTTGGACGACTTGTTGCAGAGGTAAAAAGAAAGCAGTCAACATGTGGAGTGGTACTAGGAGAAGATGTTTTGACACTGGTGGTAGAGCCCTTCATGGATCACTCTCTTATAGTAGGGCTTCTTGTTGTGTATGGTCTCATCAACCGTAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

200

Amino Acids

22.59

Weight (kDa)

9.98

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	24 - 193	2.1e-36	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53870 AT1G53870 AT1G53870 AT1G53870 AT1G53875 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT3G14260
fragaria_vesca	FvH4_5g02020 FvH4_6g35760
malus_domestica	MD06G1080400.v1.1 MD06G1080500.v1.1 MD06G1080600.v1.1 MD14G1099500.v1.1 MD14G1099700.v1.1 MD14G1101500.v1.1 MD17G1153800.v1.1
prunus_persica	Prupe.5G096400_v2.0.a1 Prupe.5G096500_v2.0.a1 Prupe.5G096600_v2.0.a1 Prupe.5G096700_v2.0.a1
pyrus_communis	pycom06g07730 pycom06g07750 pycom09g09080 pycom14g09790 pycom17g14650
rosa_chinensis	RchiOBHm_Chr2g0147771 RchiOBHm_Chr7g0198321 RchiOBHm_Chr7g0198341
rosa_laevigata	RLG00000003874 RLG00000003875 RLG00000003876 RLG00000020277
rosa_multiflora	Rmu_sc0000308.1_g000037 Rmu_sc0001250.1_g000024 Rmu_sc0001250.1_g000034
rosa_roxburghii	Rroxscaffold_3G00257820 Rroxscaffold_3G00257830 Rroxscaffold_3G00257840
rosa_rugosa	Rorug02G0401800 Rorug07G0046900 Rorug07G0047100 Rorug07G0047200
rosa_samantha	Rh2AG458900 Rh2BG472000 Rh2CG446200 Rh2DG480900 Rh7AG170400 Rh7AG170500 Rh7AG170600 Rh7BG173500 Rh7BG173600 Rh7BG173700 Rh7CG180700 Rh7CG180800 Rh7CG180900 Rh7DG172600 Rh7DG172800
rosa_wichuraiana	Rw2G037520 Rw7G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	267, 552
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	245
AfaI	GTAC	1 cut(s)	501
AflIII	ACRYGT	1 cut(s)	488
AgsI	TTSAA	4 cut(s)	60, 103, 205, 320
AjnI	CCWGG	2 cut(s)	43, 311
AluBI	AGCT	3 cut(s)	182, 333, 408
AluI	AGCT	3 cut(s)	182, 333, 408
Alw26I	GTCTC	2 cut(s)	96, 587
AlwI	GGATC	2 cut(s)	267, 552
AoxI	GGCC	2 cut(s)	106, 208
ApoI	RAATTY	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	537
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	2 cut(s)	45, 313
BciVI	GTATCC	1 cut(s)	260
BcoDI	GTCTC	2 cut(s)	96, 587
BfaI	CTAG	4 cut(s)	171, 371, 440, 503
BfuI	GTATCC	1 cut(s)	260
Bme1390I	CCNGG	2 cut(s)	45, 313
BmrFI	CCNGG	2 cut(s)	45, 313
BpmI	CTGGAG	1 cut(s)	430
BsaBI	GATNNNNATC	1 cut(s)	271
BsaI	GGTCTC	1 cut(s)	587
BsaJI	CCNNGG	3 cut(s)	43, 109, 311
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bse1I	ACTGG	2 cut(s)	276, 528
Bse8I	GATNNNNATC	1 cut(s)	271
BseBI	CCWGG	2 cut(s)	45, 313
BseDI	CCNNGG	3 cut(s)	43, 109, 311
BseGI	GGATG	3 cut(s)	13, 38, 90
BseJI	GATNNNNATC	1 cut(s)	271
BseNI	ACTGG	2 cut(s)	276, 528
BshFI	GGCC	2 cut(s)	108, 210
BslFI	GGGAC	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	96, 587
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	2 cut(s)	108, 210
Bso31I	GGTCTC	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	141, 272, 291, 544
Bsp19I	CCATGG	1 cut(s)	109
BspANI	GGCC	2 cut(s)	108, 210
BspPI	GGATC	2 cut(s)	267, 552
BspTNI	GGTCTC	1 cut(s)	587
BsrI	ACTGG	2 cut(s)	276, 528
BssECI	CCNNGG	3 cut(s)	43, 109, 311
BssMI	GATC	4 cut(s)	141, 272, 291, 544
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	2 cut(s)	45, 313
Bst4CI	ACNGT	3 cut(s)	121, 137, 593
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	3 cut(s)	13, 38, 90
BstKTI	GATC	4 cut(s)	144, 275, 294, 547
BstMAI	GTCTC	2 cut(s)	96, 587
BstMBI	GATC	4 cut(s)	141, 272, 291, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 339
BstNI	CCWGG	2 cut(s)	45, 313
BstNSI	RCATGY	2 cut(s)	354, 492
BstSCI	CCNGG	2 cut(s)	43, 311
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	108, 210
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	13, 38, 90
BtsIMutI	CAGTG	2 cut(s)	117, 521
Cac8I	GCNNGC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	4 cut(s)	110, 351, 489, 541
CviJI	RGCY	9 cut(s)	48, 108, 182, 210, 333, 408, 428, 535, 565
CviKI_1	RGCY	9 cut(s)	48, 108, 182, 210, 333, 408, 428, 535, 565
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	4 cut(s)	143, 274, 293, 546
DpnII	GATC	4 cut(s)	141, 272, 291, 544
DraI	TTTAAA	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	43, 311
EcoT14I	CCWWGG	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	4 cut(s)	113, 354, 492, 544
FalI	AAGNNNNNCTT	4 cut(s)	12, 44, 177, 209
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	4 cut(s)	109, 350, 488, 540
FokI	GGATG	2 cut(s)	25, 97
FriOI	GRGCYC	1 cut(s)	537
FspBI	CTAG	4 cut(s)	171, 371, 440, 503
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	108, 210
Hin1II	CATG	4 cut(s)	113, 354, 492, 544
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	3 cut(s)	128, 167, 379
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	1 cut(s)	171
Hpy8I	GTNNAC	1 cut(s)	486
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	3 cut(s)	121, 137, 593
HpyCH4V	TGCA	3 cut(s)	117, 432, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 339
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	4 cut(s)	113, 354, 492, 544
Kzo9I	GATC	4 cut(s)	141, 272, 291, 544
MaeI	CTAG	4 cut(s)	171, 371, 440, 503
MalI	GATC	4 cut(s)	143, 274, 293, 546
MboI	GATC	4 cut(s)	141, 272, 291, 544
MboII	GAAGA	3 cut(s)	24, 27, 521
MflI	RGATCY	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	537
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	3 cut(s)	160, 245, 596
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	3 cut(s)	167, 256, 460
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	45, 313
MvaI	CCWGG	2 cut(s)	45, 313
MwoI	GCNNNNNNNGC	2 cut(s)	114, 339
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	4 cut(s)	141, 272, 291, 544
NlaIII	CATG	4 cut(s)	113, 354, 492, 544
NspI	RCATGY	2 cut(s)	354, 492
PciI	ACATGT	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	128, 379
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PscI	ACATGT	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	43, 311
PspGI	CCWGG	2 cut(s)	43, 311
PsuI	RGATCY	1 cut(s)	272
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	336
Sau3AI	GATC	4 cut(s)	141, 272, 291, 544
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	45, 313
SduI	GDGCHC	1 cut(s)	537
SetI	ASST	8 cut(s)	12, 178, 184, 300, 317, 335, 410, 471
Sse9I	AATT	3 cut(s)	160, 245, 596
SspMI	CTAG	4 cut(s)	171, 371, 440, 503
StyD4I	CCNGG	2 cut(s)	43, 311
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	3 cut(s)	121, 137, 593
TaqI	TCGA	1 cut(s)	126
TasI	AATT	3 cut(s)	160, 245, 596
TfiI	GAWTC	2 cut(s)	128, 379
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	2 cut(s)	124, 528
TspDTI	ATGAA	4 cut(s)	27, 101, 179, 529
TspRI	CASTG	2 cut(s)	124, 528
XapI	RAATTY	1 cut(s)	245
XbaI	TCTAGA	1 cut(s)	170
XceI	RCATGY	2 cut(s)	354, 492
XspI	CTAG	4 cut(s)	171, 371, 440, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.