FvH4_5g02020

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000959
Physical Location & Seq
Reverse (-)
1260626 .. 1267669
7044 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02020.t1

Sequence Viewer

Length: 681 bp
ATGGCCAAAGTTCATCCAGTTATTCTAGTAGTACCCAGTATTGATAATAATGCTTCTGCTAGTATATCTCCATGTTCTGAACCATACATGACCTCAAAGAGAGAAACATTCACTATATGGATGAAGTCCCTTGTGATGCAGGGAAATGGATGCACAGCGTATGACGATAATGGCGAAATTGTGTATCGTGTTGATAACTACGACAACAAGCACAGCAATGAAGTTTATCTCATGGATCTCCGCGGCAAAGTTCTGTTTACTCTGTGTGAGCAGAAAATGTGCATTTTCAGACCTAATTGGGATGCTTACGAGTCGAATAGGTCGAAAACGCCATATTTTCGAGTGAGGAAGAGCGGAGTTTTCGGAGGAGGGTCTTCTTATAAGGTAACCATGCCATCTGATGGAAATTTTTACATTTTAGAAGCTGGTGGGAAATCAACATTCAGAATAAGAGATGTCAACGGAGGAGTTGTAGCTGAGGCGAGGCGAAAGCAATCGTCTTCCGGAGTAGAATTCGGAGATGATGTACTGAGTTTGGTGATGGAGCCTCATCGAAAGCAATCGTCTTCAGGAGTTGTGTTGGGAGATGATGTGCTGAGTTTGGTGGTGGAGGCTGATGTAGATCACTCCTTTATCATGGCTGTTGTGACTATCTATGGCTTAATCAAGCGTCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

227

Amino Acids

25.15

Weight (kDa)

6.9

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 36 - 184 6.4e-26 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AccB7I CCANNNNNTGG 1 cut(s) 401
AccBSI CCGCTC 1 cut(s) 354
AccII CGCG 1 cut(s) 243
AccIII TCCGGA 1 cut(s) 503
AciI CCGC 3 cut(s) 241, 243, 354
AclWI GGATC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 406, 512
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 2 cut(s) 33, 528
AfiI CCNNNNNNNGG 1 cut(s) 401
AluBI AGCT 2 cut(s) 425, 476
AluI AGCT 2 cut(s) 425, 476
AlwI GGATC 1 cut(s) 243
Aor13HI TCCGGA 1 cut(s) 503
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 406, 512
AsuHPI GGTGA 1 cut(s) 550
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 3 cut(s) 366, 492, 558
BbvCI CCTCAGC 1 cut(s) 477
BccI CCATC 3 cut(s) 395, 403, 535
BfaI CTAG 2 cut(s) 26, 60
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 546
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 3 cut(s) 126, 140, 292
BmuI ACTGGG 1 cut(s) 30
BpiI GAAGAC 3 cut(s) 366, 492, 558
Bpu10I CCTNAGC 1 cut(s) 477
BsaBI GATNNNNATC 1 cut(s) 621
BsaJI CCNNGG 1 cut(s) 241
BsaWI WCCGGW 1 cut(s) 503
BsaXI ACNNNNNCTCC 6 cut(s) 456, 486, 510, 540, 576, 606
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse1I ACTGG 2 cut(s) 17, 36
Bse3DI GCAATG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 621
BseAI TCCGGA 1 cut(s) 503
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 4 cut(s) 13, 126, 155, 307
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 3 cut(s) 468, 521, 587
BseNI ACTGG 2 cut(s) 17, 36
BseRI GAGGAG 2 cut(s) 381, 480
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 504
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 503
Bsp143I GATC 2 cut(s) 235, 622
BspACI CCGC 3 cut(s) 241, 243, 354
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 469, 522, 588
BspEI TCCGGA 1 cut(s) 503
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 546
BspPI GGATC 1 cut(s) 243
BspQI GCTCTTC 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 223
BsrI ACTGG 2 cut(s) 17, 36
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 2 cut(s) 235, 622
Bst6I CTCTTC 1 cut(s) 344
BstDEI CTNAG 3 cut(s) 477, 530, 596
BstDSI CCRYGG 1 cut(s) 241
BstEII GGTNACC 1 cut(s) 385
BstF5I GGATG 4 cut(s) 13, 126, 155, 307
BstFNI CGCG 1 cut(s) 243
BstKTI GATC 2 cut(s) 238, 625
BstMBI GATC 2 cut(s) 235, 622
BstPI GGTNACC 1 cut(s) 385
BstUI CGCG 1 cut(s) 243
BstV2I GAAGAC 3 cut(s) 366, 492, 558
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 4 cut(s) 13, 126, 155, 307
Cfr42I CCGCGG 1 cut(s) 244
CseI GACGC 1 cut(s) 659
Csp6I GTAC 2 cut(s) 32, 527
CviAII CATG 5 cut(s) 72, 88, 232, 391, 637
CviJI RGCY 7 cut(s) 5, 425, 476, 547, 614, 641, 660
CviKI_1 RGCY 7 cut(s) 5, 425, 476, 547, 614, 641, 660
CviQI GTAC 2 cut(s) 32, 527
DdeI CTNAG 3 cut(s) 477, 530, 596
DpnI GATC 2 cut(s) 237, 624
DpnII GATC 2 cut(s) 235, 622
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Eco57I CTGAAG 1 cut(s) 552
Eco91I GGTNACC 1 cut(s) 385
EcoO65I GGTNACC 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 512
FaeI CATG 5 cut(s) 75, 91, 235, 394, 640
FaqI GGGAC 1 cut(s) 112
FatI CATG 5 cut(s) 71, 87, 231, 390, 636
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 3 cut(s) 133, 162, 314
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 2 cut(s) 26, 60
GluI GCNGC 1 cut(s) 244
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 504
HgaI GACGC 1 cut(s) 659
Hin1II CATG 5 cut(s) 75, 91, 235, 394, 640
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 1 cut(s) 311
HpaII CCGG 1 cut(s) 504
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 2 cut(s) 258, 460
Hpy188I TCNGA 6 cut(s) 79, 290, 365, 400, 446, 518
Hpy188III TCNNGA 2 cut(s) 504, 570
Hpy8I GTNNAC 2 cut(s) 258, 460
HpyCH4V TGCA 3 cut(s) 139, 153, 282
HpyF3I CTNAG 3 cut(s) 477, 530, 596
Hsp92II CATG 5 cut(s) 75, 91, 235, 394, 640
Kpn2I TCCGGA 1 cut(s) 503
KspI CCGCGG 1 cut(s) 244
Kzo9I GATC 2 cut(s) 235, 622
LguI GCTCTTC 1 cut(s) 344
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 6 cut(s) 30, 49, 125, 411, 517, 555
LweI GCATC 3 cut(s) 126, 140, 292
MaeI CTAG 2 cut(s) 26, 60
MaeIII GTNAC 2 cut(s) 385, 646
MalI GATC 2 cut(s) 237, 624
MbiI CCGCTC 1 cut(s) 354
MboI GATC 2 cut(s) 235, 622
MboII GAAGA 4 cut(s) 361, 366, 492, 558
MflI RGATCY 1 cut(s) 235
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 177, 295, 406, 512
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 320
MnlI CCTC 9 cut(s) 103, 339, 359, 362, 458, 472, 477, 558, 604
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 503
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 662
MslI CAYNNNNRTG 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 1 cut(s) 504
MvnI CGCG 1 cut(s) 243
NdeII GATC 2 cut(s) 235, 622
NlaIII CATG 5 cut(s) 75, 91, 235, 394, 640
NlaIV GGNNCC 1 cut(s) 546
NmuCI GTSAC 1 cut(s) 646
PciSI GCTCTTC 1 cut(s) 344
PcsI WCGNNNNNNNCGW 2 cut(s) 171, 320
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 1 cut(s) 245
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PsiI TTATAA 1 cut(s) 381
PspEI GGTNACC 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 546
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 2 cut(s) 33, 528
RsaNI GTAC 2 cut(s) 32, 527
RseI CAYNNNNRTG 1 cut(s) 216
SacII CCGCGG 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 344
SaqAI TTAA 1 cut(s) 662
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 2 cut(s) 235, 622
SchI GAGTC 1 cut(s) 320
SetI ASST 6 cut(s) 95, 295, 323, 387, 427, 478
SfaNI GCATC 3 cut(s) 126, 140, 292
Sfr303I CCGCGG 1 cut(s) 244
SgrBI CCGCGG 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse9I AATT 4 cut(s) 177, 295, 406, 512
SsiI CCGC 3 cut(s) 241, 243, 354
SspMI CTAG 2 cut(s) 26, 60
TaqI TCGA 4 cut(s) 314, 323, 340, 553
TasI AATT 4 cut(s) 177, 295, 406, 512
TatI WGTACW 1 cut(s) 526
TauI GCSGC 1 cut(s) 246
Tru1I TTAA 1 cut(s) 662
Tru9I TTAA 1 cut(s) 662
TseFI GTSAC 1 cut(s) 646
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 2 cut(s) 137, 234
TspGWI ACGGA 1 cut(s) 477
Van91I CCANNNNNTGG 1 cut(s) 401
XapI RAATTY 2 cut(s) 406, 512
XspI CTAG 2 cut(s) 26, 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.