Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000959

Physical Location & Seq

Genomic Coordinates Forward (+)

20114920 .. 20115845

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53875.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCAAATATATAGCAACAACCGAACGATGAGGACCAAATTTTCACTTAATCTGATTTCTCCGGCGAAGAACATGGTGAAGATTCATCCTGACAAGGCGTTTCCTGTGGATTTTAGCGTGGGAGAAGGCAAGACTTCGCCGTACTTAACGACGGAGAAAGAGAGTTTCACGATTTGGATGAGATCTCTTGTGTTTCATAGTAAAGGCTGCACAGTTTTTGATTCCAAAGGAAACTTAATCTATCGAGTGGATAATTATAACTCCAAGAGTTGTAGTGAAGTTTACCTTATGGACTTATACGGCAAAATCTTGTTTACATTACGTCAAAAGAAATTGGGATTATTCAAATCTTGGAAAGGATATAACTCAACCGGGACAAGATTTCAACTAAGAAAAAACTTCAAGATATTGCCAAAGGGTTCATCTTCATCATACAAAGTTGTAATGGGATCGCGTATAGTTGATGGTGATCATCAATCTTGTTATAAGATTGTAAAACGCAAATCGGTTTTCACAATCGAGGATGGATCAGGAAGATTATTGGCAGAAGTTAAAAAGAAACAATCAAATATCAAAAGTTTAGATCTTGGGAAAGATGTATTAACAATGATGGTGGAGCCACAAGTAGATCACTCTTTAATAATGGGTATTGTTATAGCATATAGTCTTCTCAAATGTAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B LOR

Protein Analysis

228

Amino Acids

25.97

Weight (kDa)

9.84

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	55 - 221	2.2e-30	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53870 AT1G53870 AT1G53870 AT1G53870 AT1G53875 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT3G14260
fragaria_vesca	FvH4_5g02020 FvH4_6g35760
malus_domestica	MD06G1080400.v1.1 MD06G1080500.v1.1 MD06G1080600.v1.1 MD14G1099500.v1.1 MD14G1099700.v1.1 MD14G1101500.v1.1 MD17G1153800.v1.1
prunus_persica	Prupe.5G096400_v2.0.a1 Prupe.5G096500_v2.0.a1 Prupe.5G096600_v2.0.a1 Prupe.5G096700_v2.0.a1
pyrus_communis	pycom06g07730 pycom06g07750 pycom09g09080 pycom14g09790 pycom17g14650
rosa_chinensis	RchiOBHm_Chr2g0147771 RchiOBHm_Chr7g0198321 RchiOBHm_Chr7g0198341
rosa_laevigata	RLG00000003874 RLG00000003875 RLG00000003876 RLG00000020277
rosa_multiflora	Rmu_sc0000308.1_g000037 Rmu_sc0001250.1_g000024 Rmu_sc0001250.1_g000034
rosa_roxburghii	Rroxscaffold_3G00257820 Rroxscaffold_3G00257830 Rroxscaffold_3G00257840
rosa_rugosa	Rorug02G0401800 Rorug07G0046900 Rorug07G0047100 Rorug07G0047200
rosa_samantha	Rh2AG458900 Rh2BG472000 Rh2CG446200 Rh2DG480900 Rh7AG170400 Rh7AG170500 Rh7AG170600 Rh7BG173500 Rh7BG173600 Rh7BG173700 Rh7CG180700 Rh7CG180800 Rh7CG180900 Rh7DG172600 Rh7DG172800
rosa_wichuraiana	Rw2G037520 Rw7G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	258, 486
AccII	CGCG	1 cut(s)	454
AclWI	GGATC	2 cut(s)	457, 535
AcsI	RAATTY	1 cut(s)	38
AfaI	GTAC	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	346, 386, 403
AlwI	GGATC	2 cut(s)	457, 535
ApeKI	GCWGC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	88, 479
AvaII	GGWCC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	659
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	3 cut(s)	458, 518, 604
BceAI	ACGGC	2 cut(s)	124, 316
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	373
BglII	AGATCT	2 cut(s)	182, 583
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	618
BmrFI	CCNGG	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	373
BsaBI	GATNNNNATC	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	468
BseGI	GGATG	3 cut(s)	85, 183, 529
BseJI	GATNNNNATC	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	193
Bsh1236I	CGCG	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	62, 372
BslFI	GGGAC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	388
Bsp143I	GATC	6 cut(s)	182, 449, 469, 527, 583, 628
BspFNI	CGCG	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	618
BspPI	GGATC	2 cut(s)	457, 535
BssMI	GATC	6 cut(s)	182, 449, 469, 527, 583, 628
Bst4CI	ACNGT	1 cut(s)	214
BstDEI	CTNAG	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	85, 183, 529
BstFNI	CGCG	1 cut(s)	454
BstKTI	GATC	6 cut(s)	185, 452, 472, 530, 586, 631
BstMBI	GATC	6 cut(s)	182, 449, 469, 527, 583, 628
BstSCI	CCNGG	1 cut(s)	371
BstUI	CGCG	1 cut(s)	454
BstV1I	GCAGC	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	659
BstX2I	RGATCY	2 cut(s)	182, 583
BstYI	RGATCY	2 cut(s)	182, 583
BtsCI	GGATG	3 cut(s)	85, 183, 529
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	142
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	2 cut(s)	207, 619
CviKI_1	RGCY	2 cut(s)	207, 619
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	6 cut(s)	184, 451, 471, 529, 585, 630
DpnII	GATC	6 cut(s)	182, 449, 469, 527, 583, 628
Eco47I	GGWCC	1 cut(s)	33
FaeI	CATG	1 cut(s)	76
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	1 cut(s)	72
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	1 cut(s)	208
FokI	GGATG	3 cut(s)	72, 190, 536
Fsp4HI	GCNGC	1 cut(s)	208
GluI	GCNGC	1 cut(s)	208
HapII	CCGG	2 cut(s)	62, 372
Hin1II	CATG	1 cut(s)	76
HinfI	GANTC	2 cut(s)	82, 221
HpaII	CCGG	2 cut(s)	62, 372
HphI	GGTGA	2 cut(s)	88, 479
Hpy166II	GTNNAC	2 cut(s)	283, 315
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	4 cut(s)	89, 169, 403, 531
Hpy8I	GTNNAC	2 cut(s)	283, 315
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	2 cut(s)	4, 210
HpyF3I	CTNAG	1 cut(s)	389
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	6 cut(s)	182, 449, 469, 527, 583, 628
LmnI	GCTCC	1 cut(s)	616
LpnPI	CCDG	5 cut(s)	75, 102, 117, 385, 516
Lsp1109I	GCAGC	1 cut(s)	194
MaeII	ACGT	1 cut(s)	322
MalI	GATC	6 cut(s)	184, 451, 471, 529, 585, 630
MboI	GATC	6 cut(s)	182, 449, 469, 527, 583, 628
MboII	GAAGA	5 cut(s)	79, 91, 417, 546, 659
MflI	RGATCY	2 cut(s)	182, 583
MluCI	AATT	4 cut(s)	38, 253, 332, 680
MnlI	CCTC	2 cut(s)	24, 514
MseI	TTAA	6 cut(s)	48, 146, 236, 552, 602, 638
MspI	CCGG	2 cut(s)	62, 372
MspR9I	CCNGG	1 cut(s)	373
MvnI	CGCG	1 cut(s)	454
NciI	CCSGG	1 cut(s)	373
NdeII	GATC	6 cut(s)	182, 449, 469, 527, 583, 628
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	618
PfeI	GAWTC	2 cut(s)	82, 221
PkrI	GCNGC	1 cut(s)	209
PsiI	TTATAA	2 cut(s)	258, 486
PspN4I	GGNNCC	1 cut(s)	618
PspPI	GGNCC	1 cut(s)	33
PsuI	RGATCY	2 cut(s)	182, 583
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	6 cut(s)	48, 146, 236, 552, 602, 638
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	6 cut(s)	182, 449, 469, 527, 583, 628
Sau96I	GGNCC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	373
SetI	ASST	2 cut(s)	288, 325
SinI	GGWCC	1 cut(s)	33
Sse9I	AATT	4 cut(s)	38, 253, 332, 680
StyD4I	CCNGG	1 cut(s)	371
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	2 cut(s)	244, 519
TasI	AATT	4 cut(s)	38, 253, 332, 680
TfiI	GAWTC	2 cut(s)	82, 221
Tru1I	TTAA	6 cut(s)	48, 146, 236, 552, 602, 638
Tru9I	TTAA	6 cut(s)	48, 146, 236, 552, 602, 638
TseI	GCWGC	1 cut(s)	207
TspDTI	ATGAA	4 cut(s)	74, 185, 411, 417
TspGWI	ACGGA	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	33
XapI	RAATTY	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.