Rh7DG172800

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000959
Physical Location & Seq
Forward (+)
15765039 .. 15769225
4187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG172800.1

Sequence Viewer

Length: 489 bp
ATGGATGCACAGCTTTCGATGAAAATGGGGAGATCGTTTATCGCCTGGATATATAACTACGACGACAAGCACAGCAATGAAGTCTTCCTCATGGATCTCCACGGCAAGGTTCTCTTCACTCTATGTGAGCACAAAATGGGAGTGTTTACGCGTTGGAAGGGCTACGCAGCCGATGGGACAAAGCCAATGTTTCGAGTAAGAAAGAGTTGCAGATCAATCTTCGGAAACGAAGAGTCAAGTTCATACAAAGTAACCATGGGATCTGATAGCAGTTTCTACAGTTTAAAAAGTTTGTCGGCCGGAAAATCAGCAGCCTTCAGAATAACAGACAGTAACGGAAGGGTTGTGGCGGAGGCGAAGCGAAAGCAATCGTCTTCAGGAGTTGTGTTGGGAGATGATGTACTGAGTTTGGTAGTGGAGGCTGATGTAGATCACTCCTTTATCATGGCTCTTGTTACTGTCTATGGCTTAATCAAGCGTCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

162

Amino Acids

18.09

Weight (kDa)

9.23

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 24 - 155 4.1e-22 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 151
AciI CCGC 1 cut(s) 350
AclWI GGATC 2 cut(s) 102, 268
AcoI YGGCCR 1 cut(s) 297
AcuI CTGAAG 2 cut(s) 301, 360
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 149
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw21I GWGCWC 1 cut(s) 132
AlwI GGATC 2 cut(s) 102, 268
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 2 cut(s) 167, 311
BbsI GAAGAC 2 cut(s) 76, 366
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 179, 323
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 118
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 2 cut(s) 168, 312
BlsI GCNGC 2 cut(s) 169, 313
Bme1390I CCNGG 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 46
BpiI GAAGAC 2 cut(s) 76, 366
BsaBI GATNNNNATC 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 100, 255
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse3DI GCAATG 1 cut(s) 82
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 2 cut(s) 100, 255
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 395
BseX3I CGGCCG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 179, 323
Bsh1236I CGCG 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 1 cut(s) 299
BsiEI CGRYCG 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 5 cut(s) 32, 94, 212, 260, 430
Bsp19I CCATGG 1 cut(s) 255
BspACI CCGC 1 cut(s) 350
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 396
BspFNI CGCG 1 cut(s) 151
BspPI GGATC 2 cut(s) 102, 268
BsrDI GCAATG 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 100, 255
BssMI GATC 5 cut(s) 32, 94, 212, 260, 430
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 3 cut(s) 281, 332, 460
Bst6I CTCTTC 2 cut(s) 119, 225
BstDEI CTNAG 1 cut(s) 404
BstDSI CCRYGG 2 cut(s) 100, 255
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 151
BstKTI GATC 5 cut(s) 35, 97, 215, 263, 433
BstMBI GATC 5 cut(s) 32, 94, 212, 260, 430
BstMCI CGRYCG 1 cut(s) 300
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 277
BstUI CGCG 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 179, 323
BstV2I GAAGAC 2 cut(s) 76, 366
BstX2I RGATCY 2 cut(s) 94, 260
BstYI RGATCY 2 cut(s) 94, 260
BstZI CGGCCG 1 cut(s) 297
BsuRI GGCC 1 cut(s) 299
BtgI CCRYGG 2 cut(s) 100, 255
BtsCI GGATG 1 cut(s) 10
CseI GACGC 1 cut(s) 467
Csp6I GTAC 1 cut(s) 401
CviAII CATG 3 cut(s) 91, 256, 445
CviJI RGCY 9 cut(s) 13, 162, 170, 184, 299, 314, 422, 449, 468
CviKI_1 RGCY 9 cut(s) 13, 162, 170, 184, 299, 314, 422, 449, 468
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 1 cut(s) 404
DpnI GATC 5 cut(s) 34, 96, 214, 262, 432
DpnII GATC 5 cut(s) 32, 94, 212, 260, 430
DraI TTTAAA 1 cut(s) 285
EaeI YGGCCR 1 cut(s) 297
EagI CGGCCG 1 cut(s) 297
Eam1104I CTCTTC 2 cut(s) 119, 225
EarI CTCTTC 2 cut(s) 119, 225
EciI GGCGGA 1 cut(s) 365
EclXI CGGCCG 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 255
Eco52I CGGCCG 1 cut(s) 297
Eco57I CTGAAG 2 cut(s) 301, 360
EcoRII CCWGG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 3 cut(s) 94, 259, 448
FaiI YATR 9 cut(s) 52, 54, 92, 124, 244, 257, 446, 465, 487
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FaqI GGGAC 1 cut(s) 190
FatI CATG 3 cut(s) 90, 255, 444
Fnu4HI GCNGC 2 cut(s) 168, 312
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 168, 312
GluI GCNGC 2 cut(s) 168, 312
HaeIII GGCC 1 cut(s) 299
HapII CCGG 1 cut(s) 300
HgaI GACGC 1 cut(s) 467
Hin1II CATG 3 cut(s) 94, 259, 448
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 3 cut(s) 224, 265, 320
Hpy188III TCNNGA 1 cut(s) 378
Hpy8I GTNNAC 1 cut(s) 147
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 151, 325, 333
HpyCH4III ACNGT 3 cut(s) 281, 332, 460
HpyCH4V TGCA 2 cut(s) 8, 210
HpyF3I CTNAG 1 cut(s) 404
Hsp92II CATG 3 cut(s) 94, 259, 448
Kzo9I GATC 5 cut(s) 32, 94, 212, 260, 430
LpnPI CCDG 4 cut(s) 31, 58, 313, 363
Lsp1109I GCAGC 2 cut(s) 179, 323
MaeIII GTNAC 3 cut(s) 250, 332, 454
MalI GATC 5 cut(s) 34, 96, 214, 262, 432
MboI GATC 5 cut(s) 32, 94, 212, 260, 430
MboII GAAGA 5 cut(s) 76, 106, 211, 242, 366
MflI RGATCY 2 cut(s) 94, 260
MhlI GDGCHC 1 cut(s) 132
MluI ACGCGT 1 cut(s) 149
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 3 cut(s) 98, 346, 412
MseI TTAA 2 cut(s) 284, 470
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 46
MvaI CCWGG 1 cut(s) 46
MvnI CGCG 1 cut(s) 151
NcoI CCATGG 1 cut(s) 255
NdeII GATC 5 cut(s) 32, 94, 212, 260, 430
NlaIII CATG 3 cut(s) 94, 259, 448
PkrI GCNGC 2 cut(s) 169, 313
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 44
PsuI RGATCY 2 cut(s) 94, 260
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 2 cut(s) 284, 470
SatI GCNGC 2 cut(s) 168, 312
Sau3AI GATC 5 cut(s) 32, 94, 212, 260, 430
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 1 cut(s) 132
SetI ASST 2 cut(s) 15, 111
SfcI CTRYAG 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 75
SsiI CCGC 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 3 cut(s) 281, 332, 460
TaqI TCGA 2 cut(s) 17, 193
TatI WGTACW 1 cut(s) 400
Tru1I TTAA 2 cut(s) 284, 470
Tru9I TTAA 2 cut(s) 284, 470
TseI GCWGC 2 cut(s) 167, 311
TspDTI ATGAA 3 cut(s) 35, 93, 231
TspGWI ACGGA 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.