Rh7AG170600

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000959
Physical Location & Seq
Forward (+)
14756323 .. 14757396
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG170600.1

Sequence Viewer

Length: 702 bp
ATGGGACTCATGGGATTACTCTCACACCAAACTAAGCCTGTCTTCCCCAAAACCAAAGAGCTCTCTCATCTCTGCTCTCATATGGCCAAGGTTCATCCTCTCACAGTAGTACCCACTGAAGATGCTTCTTCAAGTACTACTTCATGTTCTAATAAATATATGACTTCAAAAAGAGAAACATTCACAGTATGGATGAAATCGCTTTTGATGCAAGGAAATGGATGCACAGCCTTCAACGAAACTGGCGAGGTTGTGTATCGCATCGACAACTATGACGACAAGCACAGCAATGAAGTCTTCCTCATGGATCTCCGCGGCAAGGTTCTCTTCACTCTATGTGAGCACAAAATGGGAGTGTTTACGCGTTGGAAGGGCTACGTAGCCGATGGGACAAAGCCAATGTTTCGAGTAAGAAAGAGTTGCAGATCAATCTTCGGAAACGAAGAGTCAAGTTCATACAAAGTAACCATGGGATCTGATAGCAGTTTCTACAGTTTAAAAAGTTTGTCGGCCGGAAAATCAGCAGCCTTCAGAATAACAGACAGTAACGGAAGGGTTGTGGCGGAGGCGAAGCGAAAGCAATCGTCTTCAGGAGTTGTGTTGGGAGATGATGTACTGAGTTTGGTAGTGGAGACTGATGTAGATCACTCCTTTATCATGGCTCTTGTTACTGTCTATGGCTTAATCAAGCGTCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

233

Amino Acids

25.9

Weight (kDa)

9.13

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 60 - 226 3.5e-32 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 315, 364
AciI CCGC 3 cut(s) 313, 315, 563
AclWI GGATC 2 cut(s) 315, 481
AcoI YGGCCR 2 cut(s) 84, 510
AcuI CTGAAG 3 cut(s) 138, 514, 573
AfaI GTAC 3 cut(s) 111, 136, 615
AfiI CCNNNNNNNGG 1 cut(s) 319
AflIII ACRYGT 1 cut(s) 362
AgsI TTSAA 3 cut(s) 132, 168, 235
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw21I GWGCWC 2 cut(s) 63, 345
Alw26I GTCTC 1 cut(s) 626
AlwI GGATC 2 cut(s) 315, 481
AoxI GGCC 2 cut(s) 84, 510
ApeKI GCWGC 1 cut(s) 524
BaeI ACNNNNGTAYC 2 cut(s) 93, 126
BalI TGGCCA 1 cut(s) 86
BanII GRGCYC 1 cut(s) 63
BbsI GAAGAC 3 cut(s) 34, 289, 579
Bbv12I GWGCWC 2 cut(s) 63, 345
BbvI GCAGC 1 cut(s) 536
BccI CCATC 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 490
BisI GCNGC 2 cut(s) 316, 525
BlsI GCNGC 2 cut(s) 317, 526
BmcAI AGTACT 1 cut(s) 136
BmsI GCATC 4 cut(s) 112, 198, 212, 270
BpiI GAAGAC 3 cut(s) 34, 289, 579
BsaAI YACGTR 1 cut(s) 379
BsaBI GATNNNNATC 1 cut(s) 642
BsaJI CCNNGG 3 cut(s) 87, 313, 468
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 295
Bse8I GATNNNNATC 1 cut(s) 642
BseDI CCNNGG 3 cut(s) 87, 313, 468
BseGI GGATG 3 cut(s) 94, 198, 227
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 608
BseNI ACTGG 1 cut(s) 247
BseX3I CGGCCG 1 cut(s) 510
BseXI GCAGC 1 cut(s) 536
Bsh1236I CGCG 2 cut(s) 315, 364
Bsh1285I CGRYCG 1 cut(s) 513
BshFI GGCC 2 cut(s) 86, 512
BsiEI CGRYCG 1 cut(s) 513
BsiHKAI GWGCWC 2 cut(s) 63, 345
BsiSI CCGG 1 cut(s) 513
BslFI GGGAC 2 cut(s) 18, 403
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 626
BsmFI GGGAC 2 cut(s) 18, 403
BsnI GGCC 2 cut(s) 86, 512
Bsp1286I GDGCHC 2 cut(s) 63, 345
Bsp143I GATC 4 cut(s) 307, 425, 473, 643
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 3 cut(s) 313, 315, 563
BspANI GGCC 2 cut(s) 86, 512
BspCNI CTCAG 1 cut(s) 609
BspFNI CGCG 2 cut(s) 315, 364
BspPI GGATC 2 cut(s) 315, 481
BsrDI GCAATG 1 cut(s) 295
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 3 cut(s) 87, 313, 468
BssMI GATC 4 cut(s) 307, 425, 473, 643
BssT1I CCWWGG 2 cut(s) 87, 468
Bst4CI ACNGT 5 cut(s) 106, 187, 494, 545, 673
Bst6I CTCTTC 2 cut(s) 332, 438
BstBAI YACGTR 1 cut(s) 379
BstDEI CTNAG 2 cut(s) 33, 617
BstDSI CCRYGG 2 cut(s) 313, 468
BstF5I GGATG 3 cut(s) 94, 198, 227
BstFNI CGCG 2 cut(s) 315, 364
BstKTI GATC 4 cut(s) 310, 428, 476, 646
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 4 cut(s) 307, 425, 473, 643
BstMCI CGRYCG 1 cut(s) 513
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 490
BstSNI TACGTA 1 cut(s) 379
BstUI CGCG 2 cut(s) 315, 364
BstV1I GCAGC 1 cut(s) 536
BstV2I GAAGAC 3 cut(s) 34, 289, 579
BstX2I RGATCY 2 cut(s) 307, 473
BstYI RGATCY 2 cut(s) 307, 473
BstZI CGGCCG 1 cut(s) 510
BsuRI GGCC 2 cut(s) 86, 512
BtgI CCRYGG 2 cut(s) 313, 468
BtsCI GGATG 3 cut(s) 94, 198, 227
BtsIMutI CAGTG 1 cut(s) 114
Cfr42I CCGCGG 1 cut(s) 316
CseI GACGC 1 cut(s) 680
Csp6I GTAC 3 cut(s) 110, 135, 614
CviAII CATG 5 cut(s) 10, 144, 304, 469, 658
CviQI GTAC 3 cut(s) 110, 135, 614
DdeI CTNAG 2 cut(s) 33, 617
DpnI GATC 4 cut(s) 309, 427, 475, 645
DpnII GATC 4 cut(s) 307, 425, 473, 643
DraI TTTAAA 1 cut(s) 498
EaeI YGGCCR 2 cut(s) 84, 510
EagI CGGCCG 1 cut(s) 510
Eam1104I CTCTTC 2 cut(s) 332, 438
EarI CTCTTC 2 cut(s) 332, 438
EciI GGCGGA 1 cut(s) 578
Ecl136II GAGCTC 1 cut(s) 61
EclXI CGGCCG 1 cut(s) 510
Eco105I TACGTA 1 cut(s) 379
Eco130I CCWWGG 2 cut(s) 87, 468
Eco24I GRGCYC 1 cut(s) 63
Eco52I CGGCCG 1 cut(s) 510
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 3 cut(s) 138, 514, 573
EcoICRI GAGCTC 1 cut(s) 61
EcoT14I CCWWGG 2 cut(s) 87, 468
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 2 cut(s) 87, 468
FaeI CATG 5 cut(s) 13, 147, 307, 472, 661
FalI AAGNNNNNCTT 6 cut(s) 26, 58, 124, 156, 311, 343
FaqI GGGAC 2 cut(s) 18, 403
FatI CATG 5 cut(s) 9, 143, 303, 468, 657
FauNDI CATATG 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 316, 525
FokI GGATG 3 cut(s) 81, 205, 234
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 316, 525
GluI GCNGC 2 cut(s) 316, 525
HaeIII GGCC 2 cut(s) 86, 512
HapII CCGG 1 cut(s) 513
HgaI GACGC 1 cut(s) 680
Hin1II CATG 5 cut(s) 13, 147, 307, 472, 661
HinfI GANTC 2 cut(s) 6, 446
HpaII CCGG 1 cut(s) 513
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 3 cut(s) 437, 478, 533
Hpy188III TCNNGA 1 cut(s) 591
Hpy8I GTNNAC 1 cut(s) 360
HpyAV CCTTC 4 cut(s) 241, 364, 538, 546
HpyCH4III ACNGT 5 cut(s) 106, 187, 494, 545, 673
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 3 cut(s) 211, 225, 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 2 cut(s) 33, 617
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 5 cut(s) 13, 147, 307, 472, 661
KspI CCGCGG 1 cut(s) 316
Kzo9I GATC 4 cut(s) 307, 425, 473, 643
LpnPI CCDG 4 cut(s) 51, 228, 526, 576
Lsp1109I GCAGC 1 cut(s) 536
LweI GCATC 4 cut(s) 112, 198, 212, 270
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 3 cut(s) 463, 545, 667
MalI GATC 4 cut(s) 309, 427, 475, 645
MboI GATC 4 cut(s) 307, 425, 473, 643
MboII GAAGA 8 cut(s) 34, 120, 131, 289, 319, 424, 455, 579
MflI RGATCY 2 cut(s) 307, 473
MhlI GDGCHC 2 cut(s) 63, 345
MlsI TGGCCA 1 cut(s) 86
MluI ACGCGT 1 cut(s) 362
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 4 cut(s) 108, 241, 311, 559
Mox20I TGGCCA 1 cut(s) 86
MscI TGGCCA 1 cut(s) 86
MseI TTAA 2 cut(s) 497, 683
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 315
MspI CCGG 1 cut(s) 513
MvnI CGCG 2 cut(s) 315, 364
MwoI GCNNNNNNNGC 1 cut(s) 208
NcoI CCATGG 1 cut(s) 468
NdeI CATATG 1 cut(s) 81
NdeII GATC 4 cut(s) 307, 425, 473, 643
NlaIII CATG 5 cut(s) 13, 147, 307, 472, 661
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PkrI GCNGC 2 cut(s) 317, 526
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
Ppu21I YACGTR 1 cut(s) 379
Psp124BI GAGCTC 1 cut(s) 63
PsuI RGATCY 2 cut(s) 307, 473
RsaI GTAC 3 cut(s) 111, 136, 615
RsaNI GTAC 3 cut(s) 110, 135, 614
RseI CAYNNNNRTG 1 cut(s) 288
SacI GAGCTC 1 cut(s) 63
SacII CCGCGG 1 cut(s) 316
SaqAI TTAA 2 cut(s) 497, 683
SatI GCNGC 2 cut(s) 316, 525
Sau3AI GATC 4 cut(s) 307, 425, 473, 643
ScaI AGTACT 1 cut(s) 136
SchI GAGTC 1 cut(s) 455
SduI GDGCHC 2 cut(s) 63, 345
SetI ASST 5 cut(s) 63, 93, 252, 324, 381
SfaNI GCATC 4 cut(s) 112, 198, 212, 270
SfcI CTRYAG 1 cut(s) 490
Sfr303I CCGCGG 1 cut(s) 316
SgrBI CCGCGG 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 288
SnaBI TACGTA 1 cut(s) 379
SsiI CCGC 3 cut(s) 313, 315, 563
SstI GAGCTC 1 cut(s) 63
StyI CCWWGG 2 cut(s) 87, 468
TaaI ACNGT 5 cut(s) 106, 187, 494, 545, 673
TaiI ACGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 264, 406
TatI WGTACW 2 cut(s) 134, 613
TauI GCSGC 1 cut(s) 318
Tru1I TTAA 2 cut(s) 497, 683
Tru9I TTAA 2 cut(s) 497, 683
TscAI CASTG 1 cut(s) 121
TseI GCWGC 1 cut(s) 524
TspDTI ATGAA 5 cut(s) 83, 132, 209, 306, 444
TspGWI ACGGA 1 cut(s) 564
TspRI CASTG 1 cut(s) 121
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.