Rorug07G0047100

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000959
Physical Location & Seq
Reverse (-)
3423774 .. 3430283
6510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0047100.1

Sequence Viewer

Length: 2127 bp
ATGGAAACAACTTCATCGATCACATTGAAAAACCAGGAAATATATCCTGTCATAGAATCAGCAACAGATCAGGTTGTGAAGAACAGTGGATGCTTCAATGAAGCAGAGGAGATAAGAAAAAGTTGGTTCCTGCTTCTGCTTCTACATATTGTCAATAACGGCGAAATCTTGGAAAGAATTAGTGAAAAGTCTGTTGAAGTGAGATTTTCTGGCACAGGATCAAGCATAAACCAGCAGCAAGGATCAGATCCCATTAAAGAAAGAAGCCTTCATTTCAACAAGCAGAATAATAAGGGGCAATACTGGTCAAGAAGGCAGTTTCCGGGGGAAATTGGTATGGATTATGCTCCACAAGAGAGCGAGTTTGCAACTGCGGTTGCAGCAGCTGCATTTGCCATTCACTCAATGGAACAAGCTGAATTGCAGTATCAAAAAGAGAGGAGGGAAAGTCTTAAAATCACAAGGACCAATACTTTGCAGGATCACATGAATGGGAGGCCGAGTTCTAGTGCAGCAACTCGGCGATTATCAAACAAAGGAGCAAATAATGGCGGAGCTTCAATAAAAAGGCCAATGGGGCAGGACCAAAAAACATTGGACTTAGAGAAAGCTTTTCCATCCAGGTATCCAAATCGTGGAAACTCTATAAGGCCTCCAACTCCTGCAGACGGAAATCAAAACCGAAAGGGAAATTCAAGAGGACATGGTAATGCAGTGGAAACCAAAGCAGATGCTTGGGAGAAAGCTCAGATGAAGAAGATTCAGAACCGGTATGAAAAAGTGAAAGCTGCAATTCTTGCTTGGGAAAATGATAAGAAGATGCAAGTGAAAATAAAGATGGAGAGGAGAAAGAGAGAAATGGAGCAAAGACGAGCAAGAGATATGCAACACTACCAAGTTAAGCAAGAAAGGATTGACCACATAGCAGGAGGAGCAAGGGCACAAGTGGAACAGAAAAGAAGAAATGAAGAGTCCAGAGTTAAAGAAAAGCATCAGAACAAGCCCAACATCACTCATCTAGTCCCCATGTCTAACTATGACGTTGCAGAGCTAAAGTTGGAAAATGGTCATTTGGCAATTCATGGGCTTGGTGGGATTGTTCCCACTGCTCTGGAAAAGCCCACCTGGAGCAATAGGGCTTGTGACACACTGGAATCAATAGTCCATCAAGCTACATGCCACAAAGTACCTAAAACAAATTTAAGCTCAATGGTTGCATCCTCCGGTGGAACATGGACTGACGATTCCGGCCAGCAGCCGTTGGCAAACGGTTGGATCAGAAACTGTACCCAATCCGATTCCGACTATCATGGAAAGAATGTTAGTAGTACTAGTACTACTAGCAATGTTCATGAAGAACAGACCGAGTACCAGAGGGACAATGATACAACTCTAAACACATGGGTTTCTTTTGAATCGGCTAGGAGCAAAAGCAATGACGACGATTCCACTTGTCAGGAGGGATTGGAAAACCAAGACAAAGGACGAAAGACCGCAAAGGGCAATGGATCAAGCCGTTCACGATCACGATCACGGCGAGTTGCTGCCATCCATAATCAGTCAGAGAGGAAACGAAGAGATCGGATCAATCAGAAAATGAAAGCTCTACAGAGGTTGGTGCCAAATGCCGATAAGACTGACAAAGCTTCAATGCTCGACGAAGTGATAAAATACTTGGAACAACTTCAAGCACAAGTTCAAATGATGAATAGCATGAGGAATAATATGCATCCCCATATGAATATGATGATGCCTTTAGGAATGCAGCAGCAGCAGCAACATCTTCATCAAATGTCAGTCCTAGCGCGCATGGGAATGACTCCTGTTGTTCCTGGCGCGCTAGGAATGGGAATGCTCGACGTAAGCAACATGGCAAGAATTGCTCCTCATCAATCTCTACAGCAGCCGCTCATTCATCCTACTCCTGCATCATTTCTTCCACCCTTTATGGTGCCCCAACTGATGCCGCCAAAGCCTGACCCTGCCACTAGTGCTGATCCATATCGTGCCCTCCTAGCACAACAGCAATCAATGAATATGGACCTGTTCAACAGGATGGCAGCACTGTACCGTCAACAAGTCAATCATCAGACGGCAGCAAGCAGCCCATCACAGTCGAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

708

Amino Acids

79.91

Weight (kDa)

9.6

Isoelectric Point (pI)

55.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 238 - 332 1.5e-23 Remorin, C-terminal region
HLH PF00010 518 - 563 4.1e-12 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 521 - 569 2.4e-07 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1618, 1951
AccB7I CCANNNNNTGG 1 cut(s) 635
AccBSI CCGCTC 1 cut(s) 1909
AccII CGCG 2 cut(s) 1807, 1838
AciI CCGC 5 cut(s) 374, 552, 1494, 1907, 1967
AclWI GGATC 8 cut(s) 226, 242, 250, 489, 1283, 1516, 1592, 1991
AcoI YGGCCR 1 cut(s) 1249
AcsI RAATTY 2 cut(s) 691, 1198
AfaI GTAC 6 cut(s) 1188, 1288, 1330, 1336, 1370, 2069
AfiI CCNNNNNNNGG 2 cut(s) 635, 668
AgeI ACCGGT 1 cut(s) 768
AhlI ACTAGT 2 cut(s) 1331, 1988
AjnI CCWGG 4 cut(s) 33, 620, 1124, 1831
AloI GAACNNNNNNTCC 2 cut(s) 487, 519
AlwI GGATC 8 cut(s) 226, 242, 250, 489, 1283, 1516, 1592, 1991
AlwNI CAGNNNCTG 2 cut(s) 386, 1284
AoxI GGCC 4 cut(s) 497, 569, 650, 1249
ApoI RAATTY 2 cut(s) 691, 1198
ArsI GACNNNNNNTTYG 2 cut(s) 457, 489
AsiGI ACCGGT 1 cut(s) 768
Asp700I GAANNNNTTC 1 cut(s) 1683
AspLEI GCGC 4 cut(s) 1807, 1809, 1838, 1840
AspS9I GGNCC 3 cut(s) 465, 583, 2041
AsuC2I CCSGG 1 cut(s) 324
AvaII GGWCC 3 cut(s) 465, 583, 2041
BaeGI GKGCMC 3 cut(s) 943, 1956, 2011
BanI GGYRCC 2 cut(s) 1618, 1951
BccI CCATC 6 cut(s) 625, 832, 1173, 1556, 2050, 2116
BceAI ACGGC 5 cut(s) 175, 1243, 1500, 1550, 2109
BciT130I CCWGG 4 cut(s) 35, 622, 1126, 1833
BciVI GTATCC 1 cut(s) 636
BcnI CCSGG 1 cut(s) 324
BcuI ACTAGT 2 cut(s) 1331, 1988
BfaI CTAG 9 cut(s) 507, 1019, 1332, 1341, 1422, 1802, 1841, 1989, 2015
BfmI CTRYAG 3 cut(s) 663, 1607, 1898
BfuI GTATCC 1 cut(s) 636
BglI GCCNNNNNGGC 1 cut(s) 577
BmcAI AGTACT 2 cut(s) 1330, 1336
Bme1390I CCNGG 5 cut(s) 35, 324, 622, 1126, 1833
Bme18I GGWCC 3 cut(s) 465, 583, 2041
BmgT120I GGNCC 3 cut(s) 465, 583, 2041
BmiI GGNNCC 3 cut(s) 128, 1620, 1953
BmrFI CCNGG 5 cut(s) 35, 324, 622, 1126, 1833
BmsI GCATC 9 cut(s) 80, 721, 810, 1000, 1226, 1738, 1740, 1937, 1953
BpmI CTGGAG 1 cut(s) 1147
BpuMI CCSGG 1 cut(s) 324
Bsa29I ATCGAT 1 cut(s) 17
BsaBI GATNNNNATC 2 cut(s) 1528, 2001
BsaJI CCNNGG 1 cut(s) 323
BsaWI WCCGGW 2 cut(s) 768, 1223
BsaXI ACNNNNNCTCC 4 cut(s) 433, 463, 487, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 635, 668
Bse118I RCCGGY 1 cut(s) 768
Bse1I ACTGG 2 cut(s) 308, 1155
Bse3DI GCAATG 3 cut(s) 1351, 1441, 1510
Bse8I GATNNNNATC 2 cut(s) 1528, 2001
BseBI CCWGG 4 cut(s) 35, 622, 1126, 1833
BseCI ATCGAT 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 7 cut(s) 95, 617, 1217, 1548, 1729, 1915, 2061
BseJI GATNNNNATC 2 cut(s) 1528, 2001
BseLI CCNNNNNNNGG 2 cut(s) 635, 668
BseMI GCAATG 3 cut(s) 1351, 1441, 1510
BseMII CTCAG 1 cut(s) 761
BseNI ACTGG 2 cut(s) 308, 1155
BsePI GCGCGC 2 cut(s) 1805, 1836
BseRI GAGGAG 5 cut(s) 122, 454, 859, 945, 1875
BseSI GKGCMC 3 cut(s) 943, 1956, 2011
BsgI GTGCAG 1 cut(s) 531
Bsh1236I CGCG 2 cut(s) 1807, 1838
BshFI GGCC 4 cut(s) 499, 571, 652, 1251
BshNI GGYRCC 2 cut(s) 1618, 1951
BshTI ACCGGT 1 cut(s) 768
BshVI ATCGAT 1 cut(s) 17
BsiSI CCGG 4 cut(s) 323, 769, 1224, 1248
BslFI GGGAC 2 cut(s) 1007, 1391
BslI CCNNNNNNNGG 2 cut(s) 635, 668
BsmFI GGGAC 2 cut(s) 1007, 1391
BsmI GAATGC 2 cut(s) 1767, 1857
BsnI GGCC 4 cut(s) 499, 571, 652, 1251
Bsp1286I GDGCHC 3 cut(s) 943, 1956, 2011
BspACI CCGC 5 cut(s) 374, 552, 1494, 1907, 1967
BspANI GGCC 4 cut(s) 499, 571, 652, 1251
BspCNI CTCAG 1 cut(s) 760
BspDI ATCGAT 1 cut(s) 17
BspFNI CGCG 2 cut(s) 1807, 1838
BspHI TCATGA 1 cut(s) 1351
BspLI GGNNCC 3 cut(s) 128, 1620, 1953
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 8 cut(s) 226, 242, 250, 489, 1283, 1516, 1592, 1991
BspT107I GGYRCC 2 cut(s) 1618, 1951
BsrBI CCGCTC 1 cut(s) 1909
BsrDI GCAATG 3 cut(s) 1351, 1441, 1510
BsrFI RCCGGY 1 cut(s) 768
BsrI ACTGG 2 cut(s) 308, 1155
BssAI RCCGGY 1 cut(s) 768
BssECI CCNNGG 1 cut(s) 323
BssHII GCGCGC 2 cut(s) 1805, 1836
Bst2UI CCWGG 4 cut(s) 35, 622, 1126, 1833
Bst4CI ACNGT 6 cut(s) 86, 1271, 1286, 2067, 2072, 2115
Bst6I CTCTTC 2 cut(s) 963, 1570
BstAPI GCANNNNNTGC 3 cut(s) 386, 797, 1880
BstC8I GCNNGC 4 cut(s) 1253, 1807, 1838, 2101
BstDEI CTNAG 2 cut(s) 601, 747
BstF5I GGATG 7 cut(s) 95, 617, 1217, 1548, 1729, 1915, 2061
BstFNI CGCG 2 cut(s) 1807, 1838
BstHHI GCGC 4 cut(s) 1807, 1809, 1838, 1840
BstNI CCWGG 4 cut(s) 35, 622, 1126, 1833
BstNSI RCATGY 1 cut(s) 1179
BstSCI CCNGG 5 cut(s) 33, 322, 620, 1124, 1831
BstSFI CTRYAG 3 cut(s) 663, 1607, 1898
BstSLI GKGCMC 3 cut(s) 943, 1956, 2011
BstUI CGCG 2 cut(s) 1807, 1838
BstX2I RGATCY 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 1111
BstYI RGATCY 1 cut(s) 247
Bsu15I ATCGAT 1 cut(s) 17
BsuI GTATCC 1 cut(s) 636
BsuRI GGCC 4 cut(s) 499, 571, 652, 1251
BsuTUI ATCGAT 1 cut(s) 17
BtsCI GGATG 7 cut(s) 95, 617, 1217, 1548, 1729, 1915, 2061
BtsI GCAGTG 2 cut(s) 720, 1104
BtsIMutI CAGTG 5 cut(s) 91, 720, 1104, 1148, 2063
Cac8I GCNNGC 4 cut(s) 1253, 1807, 1838, 2101
CaiI CAGNNNCTG 2 cut(s) 386, 1284
CciI TCATGA 1 cut(s) 1351
CfoI GCGC 4 cut(s) 1807, 1809, 1838, 1840
Cfr10I RCCGGY 1 cut(s) 768
Cfr13I GGNCC 3 cut(s) 465, 583, 2041
ClaI ATCGAT 1 cut(s) 17
Csp6I GTAC 6 cut(s) 1187, 1287, 1329, 1335, 1369, 2068
CspAI ACCGGT 1 cut(s) 768
CviQI GTAC 6 cut(s) 1187, 1287, 1329, 1335, 1369, 2068
DdeI CTNAG 2 cut(s) 601, 747
EaeI YGGCCR 1 cut(s) 1249
Eam1104I CTCTTC 2 cut(s) 963, 1570
EarI CTCTTC 2 cut(s) 963, 1570
EciI GGCGGA 1 cut(s) 567
Eco147I AGGCCT 1 cut(s) 652
Eco47I GGWCC 3 cut(s) 465, 583, 2041
EcoRII CCWGG 4 cut(s) 33, 620, 1124, 1831
EcoT22I ATGCAT 1 cut(s) 1731
FaqI GGGAC 2 cut(s) 1007, 1391
FauNDI CATATG 1 cut(s) 1737
FokI GGATG 7 cut(s) 102, 604, 1204, 1535, 1716, 1902, 2068
FspBI CTAG 9 cut(s) 507, 1019, 1332, 1341, 1422, 1802, 1841, 1989, 2015
GlaI GCGC 4 cut(s) 1806, 1808, 1837, 1839
GsuI CTGGAG 1 cut(s) 1147
HaeIII GGCC 4 cut(s) 499, 571, 652, 1251
HapII CCGG 4 cut(s) 323, 769, 1224, 1248
HhaI GCGC 4 cut(s) 1807, 1809, 1838, 1840
Hin6I GCGC 4 cut(s) 1805, 1807, 1836, 1838
HinP1I GCGC 4 cut(s) 1805, 1807, 1836, 1838
HincII GTYRAC 1 cut(s) 2075
HindII GTYRAC 1 cut(s) 2075
HindIII AAGCTT 2 cut(s) 609, 1644
HinfI GANTC 9 cut(s) 56, 760, 971, 1154, 1244, 1298, 1415, 1445, 1819
HpaII CCGG 4 cut(s) 323, 769, 1224, 1248
Hpy166II GTNNAC 2 cut(s) 1520, 2075
Hpy188III TCNNGA 8 cut(s) 309, 696, 975, 1112, 1352, 1457, 1521, 1527
Hpy8I GTNNAC 2 cut(s) 1520, 2075
Hpy99I CGWCG 3 cut(s) 1445, 1661, 1862
HpyAV CCTTC 2 cut(s) 278, 306
HpyCH4III ACNGT 6 cut(s) 86, 1271, 1286, 2067, 2072, 2115
HpyCH4IV ACGT 2 cut(s) 1041, 1860
HpyF3I CTNAG 2 cut(s) 601, 747
HpySE526I ACGT 2 cut(s) 1041, 1860
HspAI GCGC 4 cut(s) 1805, 1807, 1836, 1838
LmnI GCTCC 8 cut(s) 352, 539, 554, 862, 932, 1128, 1425, 1888
LweI GCATC 9 cut(s) 80, 721, 810, 1000, 1226, 1738, 1740, 1937, 1953
MaeI CTAG 9 cut(s) 507, 1019, 1332, 1341, 1422, 1802, 1841, 1989, 2015
MaeII ACGT 2 cut(s) 1041, 1860
MaeIII GTNAC 1 cut(s) 1142
MbiI CCGCTC 1 cut(s) 1909
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 3 cut(s) 943, 1956, 2011
MluCI AATT 9 cut(s) 177, 330, 419, 691, 792, 1077, 1198, 1878, 2122
MlyI GAGTC 2 cut(s) 980, 1813
MmeI TCCRAC 4 cut(s) 680, 1038, 1253, 1326
Mph1103I ATGCAT 1 cut(s) 1731
MroXI GAANNNNTTC 1 cut(s) 1683
MseI TTAA 6 cut(s) 255, 453, 900, 981, 1202, 2125
MslI CAYNNNNRTG 3 cut(s) 489, 708, 1814
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 4 cut(s) 323, 769, 1224, 1248
MspR9I CCNGG 5 cut(s) 35, 324, 622, 1126, 1833
Mva1269I GAATGC 2 cut(s) 1767, 1857
MvaI CCWGG 4 cut(s) 35, 622, 1126, 1833
MvnI CGCG 2 cut(s) 1807, 1838
NciI CCSGG 1 cut(s) 324
NdeI CATATG 1 cut(s) 1737
NlaIV GGNNCC 3 cut(s) 128, 1620, 1953
NmeAIII GCCGAG 2 cut(s) 499, 525
NmuCI GTSAC 1 cut(s) 1142
NsiI ATGCAT 1 cut(s) 1731
NspI RCATGY 1 cut(s) 1179
PagI TCATGA 1 cut(s) 1351
PauI GCGCGC 2 cut(s) 1805, 1836
PceI AGGCCT 1 cut(s) 652
PcsI WCGNNNNNNNCGW 1 cut(s) 1534
PctI GAATGC 2 cut(s) 1767, 1857
PdmI GAANNNNTTC 1 cut(s) 1683
PfeI GAWTC 7 cut(s) 56, 760, 1154, 1244, 1298, 1415, 1445
PflMI CCANNNNNTGG 1 cut(s) 635
PinAI ACCGGT 1 cut(s) 768
PleI GAGTC 2 cut(s) 979, 1813
PpsI GAGTC 2 cut(s) 979, 1813
Psp6I CCWGG 4 cut(s) 33, 620, 1124, 1831
PspGI CCWGG 4 cut(s) 33, 620, 1124, 1831
PspN4I GGNNCC 3 cut(s) 128, 1620, 1953
PspPI GGNCC 3 cut(s) 465, 583, 2041
PstI CTGCAG 1 cut(s) 667
PstNI CAGNNNCTG 2 cut(s) 386, 1284
PsuI RGATCY 1 cut(s) 247
PteI GCGCGC 2 cut(s) 1805, 1836
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 6 cut(s) 1188, 1288, 1330, 1336, 1370, 2069
RsaNI GTAC 6 cut(s) 1187, 1287, 1329, 1335, 1369, 2068
RseI CAYNNNNRTG 3 cut(s) 489, 708, 1814
SaqAI TTAA 6 cut(s) 255, 453, 900, 981, 1202, 2125
Sau96I GGNCC 3 cut(s) 465, 583, 2041
ScaI AGTACT 2 cut(s) 1330, 1336
SchI GAGTC 2 cut(s) 980, 1813
ScrFI CCNGG 5 cut(s) 35, 324, 622, 1126, 1833
SduI GDGCHC 3 cut(s) 943, 1956, 2011
SfaNI GCATC 9 cut(s) 80, 721, 810, 1000, 1226, 1738, 1740, 1937, 1953
SfcI CTRYAG 3 cut(s) 663, 1607, 1898
SinI GGWCC 3 cut(s) 465, 583, 2041
SmiMI CAYNNNNRTG 3 cut(s) 489, 708, 1814
SpeI ACTAGT 2 cut(s) 1331, 1988
Sse9I AATT 9 cut(s) 177, 330, 419, 691, 792, 1077, 1198, 1878, 2122
SseBI AGGCCT 1 cut(s) 652
SsiI CCGC 5 cut(s) 374, 552, 1494, 1907, 1967
SspMI CTAG 9 cut(s) 507, 1019, 1332, 1341, 1422, 1802, 1841, 1989, 2015
StuI AGGCCT 1 cut(s) 652
StyD4I CCNGG 5 cut(s) 33, 322, 620, 1124, 1831
TaaI ACNGT 6 cut(s) 86, 1271, 1286, 2067, 2072, 2115
TaiI ACGT 2 cut(s) 1044, 1863
TaqI TCGA 4 cut(s) 17, 1656, 1857, 2117
TaqII GACCGA 1 cut(s) 1379
TasI AATT 9 cut(s) 177, 330, 419, 691, 792, 1077, 1198, 1878, 2122
TatI WGTACW 2 cut(s) 1328, 1334
TauI GCSGC 2 cut(s) 1909, 1969
TfiI GAWTC 7 cut(s) 56, 760, 1154, 1244, 1298, 1415, 1445
Tru1I TTAA 6 cut(s) 255, 453, 900, 981, 1202, 2125
Tru9I TTAA 6 cut(s) 255, 453, 900, 981, 1202, 2125
TscAI CASTG 5 cut(s) 91, 720, 1111, 1155, 2070
TseFI GTSAC 1 cut(s) 1142
Tsp45I GTSAC 1 cut(s) 1142
TspGWI ACGGA 1 cut(s) 684
TspRI CASTG 5 cut(s) 91, 720, 1111, 1155, 2070
Van91I CCANNNNNTGG 1 cut(s) 635
VpaK11BI GGWCC 3 cut(s) 465, 583, 2041
XapI RAATTY 2 cut(s) 691, 1198
XceI RCATGY 1 cut(s) 1179
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 1683
XspI CTAG 9 cut(s) 507, 1019, 1332, 1341, 1422, 1802, 1841, 1989, 2015
ZrmI AGTACT 2 cut(s) 1330, 1336
Zsp2I ATGCAT 1 cut(s) 1731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.