Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000959

Physical Location & Seq

Genomic Coordinates Reverse (-)

12035993 .. 12036613

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g09790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCCAAGGTTCATCCTCTCTTAACAATCAATAGTAGTGATCGTGATGATGCTTCATGTTCTGATAATAGGTATATGACATCAAAGAGAGAAACATTCACTATATGGATGAAATCTCTTGTGATGCAAGGAAACGGATGCACCACTTTTGATGAAAATGGTGAAGTTGTTTATCGCATAGATAACTACGACAACAAGCACAGCAACGAAGTTTATCTCATGGATCTTCGCGGCAAGCTTCTCTTCACTGTTTATGAGAAGAAAGTTTGCAGTTTCCGAAGATGGGAGGGCTATAGAAGCAACAATATTGGTGGCAATAAGCCATTGTTTCGAGTGAAAAAGAATTTTAGATCAATTCTTGGAAATAAGGAGTCTTCATACAAAGTAACGATGAGATCTGACAGCAATTGCTACAGGTTAGAGCGTTTGAATGGCGAATCAACAGCTTTCAGAATTATGGATAACAATGGAAGAGTTGTAGCAGAGGCTAAGAGAAAGCAGTCAAGTTCAGGAGTAGTTTTTGGAGATGATGTCCTTACATTGGTAGTGGAGCCTCATATGGATCATTCCTTCATTATGGCTCTTGTCACTGTTTATGGCTTAATAAGAAATCTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

207

Amino Acids

23.73

Weight (kDa)

9.24

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	32 - 199	2.1e-37	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53870 AT1G53870 AT1G53870 AT1G53870 AT1G53875 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT3G14260
fragaria_vesca	FvH4_5g02020 FvH4_6g35760
malus_domestica	MD06G1080400.v1.1 MD06G1080500.v1.1 MD06G1080600.v1.1 MD14G1099500.v1.1 MD14G1099700.v1.1 MD14G1101500.v1.1 MD17G1153800.v1.1
prunus_persica	Prupe.5G096400_v2.0.a1 Prupe.5G096500_v2.0.a1 Prupe.5G096600_v2.0.a1 Prupe.5G096700_v2.0.a1
pyrus_communis	pycom06g07730 pycom06g07750 pycom09g09080 pycom14g09790 pycom17g14650
rosa_chinensis	RchiOBHm_Chr2g0147771 RchiOBHm_Chr7g0198321 RchiOBHm_Chr7g0198341
rosa_laevigata	RLG00000003874 RLG00000003875 RLG00000003876 RLG00000020277
rosa_multiflora	Rmu_sc0000308.1_g000037 Rmu_sc0001250.1_g000024 Rmu_sc0001250.1_g000034
rosa_roxburghii	Rroxscaffold_3G00257820 Rroxscaffold_3G00257830 Rroxscaffold_3G00257840
rosa_rugosa	Rorug02G0401800 Rorug07G0046900 Rorug07G0047100 Rorug07G0047200
rosa_samantha	Rh2AG458900 Rh2BG472000 Rh2CG446200 Rh2DG480900 Rh7AG170400 Rh7AG170500 Rh7AG170600 Rh7BG173500 Rh7BG173600 Rh7BG173700 Rh7CG180700 Rh7CG180800 Rh7CG180900 Rh7DG172600 Rh7DG172800
rosa_wichuraiana	Rw2G037520 Rw7G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	231
AciI	CCGC	1 cut(s)	231
AclWI	GGATC	2 cut(s)	231, 570
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	283, 541
AgsI	TTSAA	1 cut(s)	430
AluBI	AGCT	2 cut(s)	238, 446
AluI	AGCT	2 cut(s)	238, 446
AlwI	GGATC	2 cut(s)	231, 570
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	366
BccI	CCATC	1 cut(s)	276
BfmI	CTRYAG	2 cut(s)	292, 412
BglII	AGATCT	1 cut(s)	395
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	552
BmsI	GCATC	3 cut(s)	40, 114, 128
BpiI	GAAGAC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 541
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	3 cut(s)	13, 114, 143
BseLI	CCNNNNNNNGG	2 cut(s)	283, 541
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	283, 541
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	5 cut(s)	40, 223, 350, 395, 562
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	552
BspPI	GGATC	2 cut(s)	231, 570
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	5 cut(s)	40, 223, 350, 395, 562
BssT1I	CCWWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	250, 592
Bst6I	CTCTTC	2 cut(s)	248, 466
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	489
BstF5I	GGATG	3 cut(s)	13, 114, 143
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	5 cut(s)	43, 226, 353, 398, 565
BstMBI	GATC	5 cut(s)	40, 223, 350, 395, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstSFI	CTRYAG	2 cut(s)	292, 412
BstUI	CGCG	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	2 cut(s)	223, 395
BstYI	RGATCY	2 cut(s)	223, 395
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	3 cut(s)	13, 114, 143
BtsIMutI	CAGTG	2 cut(s)	246, 588
Cac8I	GCNNGC	1 cut(s)	236
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	2 cut(s)	57, 220
CviJI	RGCY	9 cut(s)	5, 238, 291, 322, 446, 488, 553, 581, 600
CviKI_1	RGCY	9 cut(s)	5, 238, 291, 322, 446, 488, 553, 581, 600
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	5 cut(s)	42, 225, 352, 397, 564
DpnII	GATC	5 cut(s)	40, 223, 350, 395, 562
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	248, 466
EarI	CTCTTC	2 cut(s)	248, 466
Eco130I	CCWWGG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	60, 223
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FatI	CATG	2 cut(s)	56, 219
FauNDI	CATATG	1 cut(s)	558
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	2 cut(s)	121, 150
Fsp4HI	GCNGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	60, 223
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	371, 437
HphI	GGTGA	1 cut(s)	173
Hpy188I	TCNGA	4 cut(s)	64, 278, 400, 452
Hpy188III	TCNNGA	2 cut(s)	44, 510
HpyAV	CCTTC	1 cut(s)	580
HpyCH4III	ACNGT	2 cut(s)	250, 592
HpyCH4V	TGCA	3 cut(s)	127, 141, 270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	1 cut(s)	489
Hsp92II	CATG	2 cut(s)	60, 223
Kzo9I	GATC	5 cut(s)	40, 223, 350, 395, 562
LmnI	GCTCC	1 cut(s)	550
LpnPI	CCDG	2 cut(s)	400, 495
LweI	GCATC	3 cut(s)	40, 114, 128
MaeIII	GTNAC	2 cut(s)	385, 586
MalI	GATC	5 cut(s)	42, 225, 352, 397, 564
MboI	GATC	5 cut(s)	40, 223, 350, 395, 562
MboII	GAAGA	6 cut(s)	218, 235, 271, 291, 366, 483
MfeI	CAATTG	1 cut(s)	406
MflI	RGATCY	2 cut(s)	223, 395
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	343, 354, 406, 453
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	4 cut(s)	27, 280, 478, 564
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	23, 602
Msp20I	TGGCCA	1 cut(s)	5
MunI	CAATTG	1 cut(s)	406
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	297
NdeI	CATATG	1 cut(s)	558
NdeII	GATC	5 cut(s)	40, 223, 350, 395, 562
NlaIII	CATG	2 cut(s)	60, 223
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	1 cut(s)	586
PfeI	GAWTC	1 cut(s)	437
PkrI	GCNGC	1 cut(s)	233
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	552
PsuI	RGATCY	2 cut(s)	223, 395
SaqAI	TTAA	2 cut(s)	23, 602
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	5 cut(s)	40, 223, 350, 395, 562
SchI	GAGTC	1 cut(s)	380
SetI	ASST	5 cut(s)	12, 74, 240, 419, 448
SfaNI	GCATC	3 cut(s)	40, 114, 128
SfcI	CTRYAG	2 cut(s)	292, 412
Sse9I	AATT	4 cut(s)	343, 354, 406, 453
SsiI	CCGC	1 cut(s)	231
SspI	AATATT	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	250, 592
TaqI	TCGA	1 cut(s)	331
TasI	AATT	4 cut(s)	343, 354, 406, 453
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	2 cut(s)	23, 602
Tru9I	TTAA	2 cut(s)	23, 602
TscAI	CASTG	2 cut(s)	253, 595
TseFI	GTSAC	1 cut(s)	586
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	5 cut(s)	45, 125, 168, 366, 562
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	2 cut(s)	253, 595
XapI	RAATTY	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.