Rw7G014920

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000959
Physical Location & Seq
Forward (+)
14765376 .. 14766191
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G014920.1

Sequence Viewer

Length: 816 bp
ATGCACATATCACATGTGCACAAAATAAACGTGCAGTTCGTTGTTGATGAGAAGCCAATATTTAAAAATTTTATTCTCAGTTCCCATTTTCAGAGAGTATATATTACCAGCTTGATGGGACTCATGGGAGTACTCTCACACCAAACTAAGCCTGTCTTCCCCAAAACCAAAGAGCTCTCTCATCTCTGCTCTCATATGGCCAAGGTTCATCCTCTCACAGTAGTACCCACTGAAGATGCTTCGTCAAGTACTACTTCATGTTTTAATAAATATATGACTTCAAAAAGAGAAACATTCACAGTATGGATGAAATCGCTTTTGATGCAAGGAAATGGATGCACAGCCTTCAACGAAACTGGCGAGGTTGTGTATCGCATCGACAACTATGACGACAAGCACAGCAATGAAGTCTTCCTCATGGATCTCCGCGGCAAGGTTCTCTTCACTCTATGTGAGCACAAAATGGGAGTGTTTACGCGTTGGAAGGGCTACGCAGCCGATGGGACAAAGCCAATGTTTCGAGTAAGAAAGAGTTGCAGATCAATCTTCGGAAACGAAGAGTCAAGTTCATACAAAGTAACCATGGGATCTGATAGCAGTTTCTACAGTTTAAAAAGTTTGTCGGCCGGAAAATCAGCAGCCTTCAGAATAACAGACAGTAACGGAAGGGTTGTGGCGGAGGCGAAGCGAAAGCAATCGTCTTCAGGAGTTGTGTTGGGAGATGATGTACTGAGTTTGGTAGTGGAGTCTGATGTAGATCACTCCTTTATCATGGCTCTTGTTACTGTCTATGGCTTAATCAAGCGTCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

271

Amino Acids

30.44

Weight (kDa)

9.27

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 98 - 264 2.3e-32 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 429, 478
AciI CCGC 3 cut(s) 427, 429, 677
AclWI GGATC 2 cut(s) 429, 595
AcoI YGGCCR 2 cut(s) 198, 624
AcsI RAATTY 1 cut(s) 67
AcuI CTGAAG 3 cut(s) 252, 628, 687
AfaI GTAC 4 cut(s) 132, 225, 250, 729
AfiI CCNNNNNNNGG 1 cut(s) 433
AflIII ACRYGT 2 cut(s) 13, 476
AgsI TTSAA 2 cut(s) 282, 349
AluBI AGCT 2 cut(s) 111, 175
AluI AGCT 2 cut(s) 111, 175
Alw21I GWGCWC 3 cut(s) 21, 177, 459
Alw44I GTGCAC 1 cut(s) 17
AlwI GGATC 2 cut(s) 429, 595
AoxI GGCC 2 cut(s) 198, 624
ApaLI GTGCAC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 494, 638
ApoI RAATTY 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 21
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BalI TGGCCA 1 cut(s) 200
BanII GRGCYC 1 cut(s) 177
BbsI GAAGAC 3 cut(s) 148, 403, 693
Bbv12I GWGCWC 3 cut(s) 21, 177, 459
BbvI GCAGC 2 cut(s) 506, 650
BccI CCATC 2 cut(s) 109, 494
BfmI CTRYAG 1 cut(s) 604
BisI GCNGC 3 cut(s) 430, 495, 639
BlsI GCNGC 3 cut(s) 431, 496, 640
BmcAI AGTACT 2 cut(s) 132, 250
BmsI GCATC 4 cut(s) 226, 312, 326, 384
BpiI GAAGAC 3 cut(s) 148, 403, 693
BsaBI GATNNNNATC 1 cut(s) 756
BsaJI CCNNGG 3 cut(s) 201, 427, 582
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse1I ACTGG 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 409
Bse8I GATNNNNATC 1 cut(s) 756
BseDI CCNNGG 3 cut(s) 201, 427, 582
BseGI GGATG 3 cut(s) 208, 312, 341
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 2 cut(s) 91, 722
BseNI ACTGG 1 cut(s) 361
BseSI GKGCMC 1 cut(s) 21
BseX3I CGGCCG 1 cut(s) 624
BseXI GCAGC 2 cut(s) 506, 650
BsgI GTGCAG 1 cut(s) 53
Bsh1236I CGCG 2 cut(s) 429, 478
Bsh1285I CGRYCG 1 cut(s) 627
BshFI GGCC 2 cut(s) 200, 626
BsiEI CGRYCG 1 cut(s) 627
BsiHKAI GWGCWC 3 cut(s) 21, 177, 459
BsiSI CCGG 1 cut(s) 627
BslFI GGGAC 2 cut(s) 132, 517
BslI CCNNNNNNNGG 1 cut(s) 433
BsmFI GGGAC 2 cut(s) 132, 517
BsnI GGCC 2 cut(s) 200, 626
Bsp1286I GDGCHC 3 cut(s) 21, 177, 459
Bsp143I GATC 4 cut(s) 421, 539, 587, 757
Bsp19I CCATGG 1 cut(s) 582
BspACI CCGC 3 cut(s) 427, 429, 677
BspANI GGCC 2 cut(s) 200, 626
BspCNI CTCAG 2 cut(s) 90, 723
BspFNI CGCG 2 cut(s) 429, 478
BspPI GGATC 2 cut(s) 429, 595
BsrDI GCAATG 1 cut(s) 409
BsrI ACTGG 1 cut(s) 361
BssECI CCNNGG 3 cut(s) 201, 427, 582
BssMI GATC 4 cut(s) 421, 539, 587, 757
BssT1I CCWWGG 2 cut(s) 201, 582
Bst4CI ACNGT 5 cut(s) 220, 301, 608, 659, 787
Bst6I CTCTTC 2 cut(s) 446, 552
BstDEI CTNAG 3 cut(s) 77, 147, 731
BstDSI CCRYGG 2 cut(s) 427, 582
BstF5I GGATG 3 cut(s) 208, 312, 341
BstFNI CGCG 2 cut(s) 429, 478
BstKTI GATC 4 cut(s) 424, 542, 590, 760
BstMBI GATC 4 cut(s) 421, 539, 587, 757
BstMCI CGRYCG 1 cut(s) 627
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 604
BstSLI GKGCMC 1 cut(s) 21
BstUI CGCG 2 cut(s) 429, 478
BstV1I GCAGC 2 cut(s) 506, 650
BstV2I GAAGAC 3 cut(s) 148, 403, 693
BstX2I RGATCY 2 cut(s) 421, 587
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 2 cut(s) 421, 587
BstZI CGGCCG 1 cut(s) 624
BsuRI GGCC 2 cut(s) 200, 626
BtgI CCRYGG 2 cut(s) 427, 582
BtsCI GGATG 3 cut(s) 208, 312, 341
BtsIMutI CAGTG 1 cut(s) 228
Cfr42I CCGCGG 1 cut(s) 430
CseI GACGC 1 cut(s) 794
Csp6I GTAC 4 cut(s) 131, 224, 249, 728
CviAII CATG 6 cut(s) 14, 124, 258, 418, 583, 772
CviQI GTAC 4 cut(s) 131, 224, 249, 728
DdeI CTNAG 3 cut(s) 77, 147, 731
DpnI GATC 4 cut(s) 423, 541, 589, 759
DpnII GATC 4 cut(s) 421, 539, 587, 757
DraI TTTAAA 2 cut(s) 64, 612
EaeI YGGCCR 2 cut(s) 198, 624
EagI CGGCCG 1 cut(s) 624
Eam1104I CTCTTC 2 cut(s) 446, 552
EarI CTCTTC 2 cut(s) 446, 552
EciI GGCGGA 1 cut(s) 692
Ecl136II GAGCTC 1 cut(s) 175
EclXI CGGCCG 1 cut(s) 624
Eco130I CCWWGG 2 cut(s) 201, 582
Eco24I GRGCYC 1 cut(s) 177
Eco52I CGGCCG 1 cut(s) 624
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 3 cut(s) 252, 628, 687
EcoICRI GAGCTC 1 cut(s) 175
EcoT14I CCWWGG 2 cut(s) 201, 582
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 2 cut(s) 201, 582
FaeI CATG 6 cut(s) 17, 127, 261, 421, 586, 775
FalI AAGNNNNNCTT 6 cut(s) 140, 172, 238, 270, 425, 457
FaqI GGGAC 2 cut(s) 132, 517
FatI CATG 6 cut(s) 13, 123, 257, 417, 582, 771
FauNDI CATATG 1 cut(s) 195
Fnu4HI GCNGC 3 cut(s) 430, 495, 639
FokI GGATG 3 cut(s) 195, 319, 348
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 3 cut(s) 430, 495, 639
GluI GCNGC 3 cut(s) 430, 495, 639
HaeIII GGCC 2 cut(s) 200, 626
HapII CCGG 1 cut(s) 627
HgaI GACGC 1 cut(s) 794
Hin1II CATG 6 cut(s) 17, 127, 261, 421, 586, 775
HinfI GANTC 3 cut(s) 120, 560, 746
HpaII CCGG 1 cut(s) 627
Hpy166II GTNNAC 2 cut(s) 19, 474
Hpy188I TCNGA 5 cut(s) 93, 551, 592, 647, 751
Hpy188III TCNNGA 1 cut(s) 705
Hpy8I GTNNAC 2 cut(s) 19, 474
HpyAV CCTTC 4 cut(s) 355, 478, 652, 660
HpyCH4III ACNGT 5 cut(s) 220, 301, 608, 659, 787
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 6 cut(s) 4, 19, 34, 325, 339, 537
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 3 cut(s) 77, 147, 731
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 6 cut(s) 17, 127, 261, 421, 586, 775
KspI CCGCGG 1 cut(s) 430
Kzo9I GATC 4 cut(s) 421, 539, 587, 757
LpnPI CCDG 5 cut(s) 121, 165, 342, 640, 690
Lsp1109I GCAGC 2 cut(s) 506, 650
LweI GCATC 4 cut(s) 226, 312, 326, 384
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 3 cut(s) 577, 659, 781
MalI GATC 4 cut(s) 423, 541, 589, 759
MboI GATC 4 cut(s) 421, 539, 587, 757
MboII GAAGA 7 cut(s) 148, 245, 403, 433, 538, 569, 693
MflI RGATCY 2 cut(s) 421, 587
MhlI GDGCHC 3 cut(s) 21, 177, 459
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 1 cut(s) 67
MluI ACGCGT 1 cut(s) 476
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 3 cut(s) 114, 569, 755
MmeI TCCRAC 1 cut(s) 461
MnlI CCTC 4 cut(s) 222, 355, 425, 673
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
MseI TTAA 4 cut(s) 63, 264, 611, 797
MslI CAYNNNNRTG 1 cut(s) 402
Msp20I TGGCCA 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 1 cut(s) 627
MvnI CGCG 2 cut(s) 429, 478
MwoI GCNNNNNNNGC 1 cut(s) 322
NcoI CCATGG 1 cut(s) 582
NdeI CATATG 1 cut(s) 195
NdeII GATC 4 cut(s) 421, 539, 587, 757
NlaIII CATG 6 cut(s) 17, 127, 261, 421, 586, 775
NspI RCATGY 1 cut(s) 17
PciI ACATGT 1 cut(s) 13
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 357
PkrI GCNGC 3 cut(s) 431, 496, 640
PleI GAGTC 3 cut(s) 114, 568, 754
PpsI GAGTC 3 cut(s) 114, 568, 754
PscI ACATGT 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 177
PsuI RGATCY 2 cut(s) 421, 587
RsaI GTAC 4 cut(s) 132, 225, 250, 729
RsaNI GTAC 4 cut(s) 131, 224, 249, 728
RseI CAYNNNNRTG 1 cut(s) 402
SacI GAGCTC 1 cut(s) 177
SacII CCGCGG 1 cut(s) 430
SaqAI TTAA 4 cut(s) 63, 264, 611, 797
SatI GCNGC 3 cut(s) 430, 495, 639
Sau3AI GATC 4 cut(s) 421, 539, 587, 757
ScaI AGTACT 2 cut(s) 132, 250
SchI GAGTC 3 cut(s) 114, 569, 755
SduI GDGCHC 3 cut(s) 21, 177, 459
SetI ASST 6 cut(s) 33, 113, 177, 207, 366, 438
SfaNI GCATC 4 cut(s) 226, 312, 326, 384
SfcI CTRYAG 1 cut(s) 604
Sfr303I CCGCGG 1 cut(s) 430
SgrBI CCGCGG 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 402
Sse9I AATT 1 cut(s) 67
SsiI CCGC 3 cut(s) 427, 429, 677
SspI AATATT 1 cut(s) 60
SstI GAGCTC 1 cut(s) 177
StyI CCWWGG 2 cut(s) 201, 582
TaaI ACNGT 5 cut(s) 220, 301, 608, 659, 787
TaiI ACGT 1 cut(s) 33
TaqI TCGA 2 cut(s) 378, 520
TasI AATT 1 cut(s) 67
TatI WGTACW 3 cut(s) 130, 248, 727
TauI GCSGC 1 cut(s) 432
Tru1I TTAA 4 cut(s) 63, 264, 611, 797
Tru9I TTAA 4 cut(s) 63, 264, 611, 797
TscAI CASTG 1 cut(s) 235
TseI GCWGC 2 cut(s) 494, 638
TspDTI ATGAA 5 cut(s) 197, 246, 323, 420, 558
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 1 cut(s) 235
VneI GTGCAC 1 cut(s) 17
XapI RAATTY 1 cut(s) 67
XceI RCATGY 1 cut(s) 17
ZrmI AGTACT 2 cut(s) 132, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.