Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000959

Physical Location & Seq

Genomic Coordinates Reverse (-)

10557089 .. 10558099

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G096600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCCAAGGTTCATCCTCTCATAATACCCAACAGTACCAATAGCGATGATGCATCTTCAAGCTGTACTATTCATACACGTATGACTTCAACGGGAGAAACATTCACGGTATGGATGAAATTGCTTGTGATGCAAGGAAACGGATGCACTGCGTTTGATGGAAACGGAGAGGTCGTTTATCGAATCGATAACTACGACAACAAGCACAGCAACGAAGTTTATCTCATGGATCTCCGCGGAAAACTTCTCTTCACTGTGTGTGAGAAGAAAATGTGCGGCTTTCCAACTTGGAAGGGGTGTAAAAATAATGGTGCCAATAAGACATTTTTTCAAGTGAGAAAAAGCTGGAGATCGGTTCTTGGAAAGAAAGGGTTTTCTTATAAAGTAACCATGGGATCTGATAGTAGTTTTTACAGGTTAGAGGGTTTGAGTGGTAAATCATTAGAATTCAGAATCACAGATGGCAACGGAGGAGTTGTAGCAGAGACAAAGAGAAAGCAGTCAAGTTCAGGAGTTGTATTGGGAGATGATGTGTTCACTTTGGTGGTGGAGCCTCATGTTGATCACTCCTTTATCATGGCTCTCGTTACTGTTTATGGCTTAATTAGACATCAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

207

Amino Acids

22.9

Weight (kDa)

9.07

Isoelectric Point (pI)

25.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53870 AT1G53870 AT1G53870 AT1G53870 AT1G53875 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT3G14260
fragaria_vesca	FvH4_5g02020 FvH4_6g35760
malus_domestica	MD06G1080400.v1.1 MD06G1080500.v1.1 MD06G1080600.v1.1 MD14G1099500.v1.1 MD14G1099700.v1.1 MD14G1101500.v1.1 MD17G1153800.v1.1
prunus_persica	Prupe.5G096400_v2.0.a1 Prupe.5G096500_v2.0.a1 Prupe.5G096600_v2.0.a1 Prupe.5G096700_v2.0.a1
pyrus_communis	pycom06g07730 pycom06g07750 pycom09g09080 pycom14g09790 pycom17g14650
rosa_chinensis	RchiOBHm_Chr2g0147771 RchiOBHm_Chr7g0198321 RchiOBHm_Chr7g0198341
rosa_laevigata	RLG00000003874 RLG00000003875 RLG00000003876 RLG00000020277
rosa_multiflora	Rmu_sc0000308.1_g000037 Rmu_sc0001250.1_g000024 Rmu_sc0001250.1_g000034
rosa_roxburghii	Rroxscaffold_3G00257820 Rroxscaffold_3G00257830 Rroxscaffold_3G00257840
rosa_rugosa	Rorug02G0401800 Rorug07G0046900 Rorug07G0047100 Rorug07G0047200
rosa_samantha	Rh2AG458900 Rh2BG472000 Rh2CG446200 Rh2DG480900 Rh7AG170400 Rh7AG170500 Rh7AG170600 Rh7BG173500 Rh7BG173600 Rh7BG173700 Rh7CG180700 Rh7CG180800 Rh7CG180900 Rh7DG172600 Rh7DG172800
rosa_wichuraiana	Rw2G037520 Rw7G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	311
AccII	CGCG	1 cut(s)	237
AciI	CCGC	3 cut(s)	235, 237, 276
AclWI	GGATC	2 cut(s)	237, 403
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	446
AdeI	CACNNNGTG	1 cut(s)	258
AfaI	GTAC	2 cut(s)	37, 67
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	60, 90, 332
AleI	CACNNNNGTG	1 cut(s)	542
AluBI	AGCT	2 cut(s)	63, 345
AluI	AGCT	2 cut(s)	63, 345
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	2 cut(s)	237, 403
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	446
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	311
BccI	CCATC	2 cut(s)	152, 455
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	479
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	313, 552
BmsI	GCATC	4 cut(s)	40, 62, 120, 134
BpmI	CTGGAG	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	80
BsaJI	CCNNGG	3 cut(s)	6, 235, 390
BsaXI	ACNNNNNCTCC	6 cut(s)	159, 189, 462, 492, 516, 546
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	3 cut(s)	6, 235, 390
BseGI	GGATG	3 cut(s)	13, 120, 149
BseRI	GAGGAG	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	311
BshVI	ATCGAT	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	4 cut(s)	229, 350, 395, 562
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	3 cut(s)	235, 237, 276
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	313, 552
BspPI	GGATC	2 cut(s)	237, 403
BspT107I	GGYRCC	1 cut(s)	311
BssECI	CCNNGG	3 cut(s)	6, 235, 390
BssMI	GATC	4 cut(s)	229, 350, 395, 562
BssT1I	CCWWGG	2 cut(s)	6, 390
Bst4CI	ACNGT	4 cut(s)	35, 109, 256, 592
Bst6I	CTCTTC	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	80
BstDSI	CCRYGG	2 cut(s)	235, 390
BstF5I	GGATG	3 cut(s)	13, 120, 149
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	4 cut(s)	232, 353, 398, 565
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	4 cut(s)	229, 350, 395, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstUI	CGCG	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	229, 395
BstYI	RGATCY	2 cut(s)	229, 395
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	186
BtgI	CCRYGG	2 cut(s)	235, 390
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	3 cut(s)	13, 120, 149
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	147, 252
Cfr42I	CCGCGG	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	36, 66
CviAII	CATG	4 cut(s)	226, 391, 557, 577
CviJI	RGCY	7 cut(s)	5, 63, 279, 345, 553, 581, 600
CviKI_1	RGCY	7 cut(s)	5, 63, 279, 345, 553, 581, 600
CviQI	GTAC	2 cut(s)	36, 66
DpnI	GATC	4 cut(s)	231, 352, 397, 564
DpnII	GATC	4 cut(s)	229, 350, 395, 562
DraIII	CACNNNGTG	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	2 cut(s)	6, 390
EcoRI	GAATTC	1 cut(s)	446
EcoT14I	CCWWGG	2 cut(s)	6, 390
EcoT22I	ATGCAT	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	6, 390
FaeI	CATG	4 cut(s)	229, 394, 560, 580
FatI	CATG	4 cut(s)	225, 390, 556, 576
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	2 cut(s)	127, 156
Fsp4HI	GCNGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	277
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	229, 394, 560, 580
HinfI	GANTC	2 cut(s)	183, 453
Hpy166II	GTNNAC	1 cut(s)	537
Hpy188I	TCNGA	3 cut(s)	400, 452, 620
Hpy188III	TCNNGA	1 cut(s)	510
Hpy8I	GTNNAC	1 cut(s)	537
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	4 cut(s)	35, 109, 256, 592
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	53, 133, 147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	4 cut(s)	229, 394, 560, 580
Ksp22I	TGATCA	1 cut(s)	562
KspI	CCGCGG	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	229, 350, 395, 562
LmnI	GCTCC	1 cut(s)	550
LpnPI	CCDG	3 cut(s)	331, 400, 495
LweI	GCATC	4 cut(s)	40, 62, 120, 134
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	2 cut(s)	385, 586
MalI	GATC	4 cut(s)	231, 352, 397, 564
MboI	GATC	4 cut(s)	229, 350, 395, 562
MboII	GAAGA	3 cut(s)	48, 241, 277
MflI	RGATCY	2 cut(s)	229, 395
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	119, 446, 603
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	5 cut(s)	27, 163, 415, 464, 564
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	55
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	602
MslI	CAYNNNNRTG	1 cut(s)	542
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	130
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	4 cut(s)	229, 350, 395, 562
NlaIII	CATG	4 cut(s)	229, 394, 560, 580
NlaIV	GGNNCC	2 cut(s)	313, 552
NsiI	ATGCAT	1 cut(s)	55
OliI	CACNNNNGTG	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 192
PfeI	GAWTC	2 cut(s)	183, 453
PkrI	GCNGC	1 cut(s)	278
Ppu21I	YACGTR	1 cut(s)	80
PsiI	TTATAA	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	313, 552
PsuI	RGATCY	2 cut(s)	229, 395
RsaI	GTAC	2 cut(s)	37, 67
RsaNI	GTAC	2 cut(s)	36, 66
RseI	CAYNNNNRTG	1 cut(s)	542
SacII	CCGCGG	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	602
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	4 cut(s)	229, 350, 395, 562
SetI	ASST	6 cut(s)	12, 65, 82, 174, 347, 419
SfaNI	GCATC	4 cut(s)	40, 62, 120, 134
Sfr303I	CCGCGG	1 cut(s)	238
SgrBI	CCGCGG	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	542
Sse9I	AATT	3 cut(s)	119, 446, 603
SsiI	CCGC	3 cut(s)	235, 237, 276
StyI	CCWWGG	2 cut(s)	6, 390
TaaI	ACNGT	4 cut(s)	35, 109, 256, 592
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	181, 186
TasI	AATT	3 cut(s)	119, 446, 603
TatI	WGTACW	1 cut(s)	65
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	183, 453
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TscAI	CASTG	2 cut(s)	154, 259
TspDTI	ATGAA	2 cut(s)	62, 131
TspGWI	ACGGA	3 cut(s)	156, 180, 483
TspRI	CASTG	2 cut(s)	154, 259
XapI	RAATTY	1 cut(s)	446
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.