Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001250.1

Orthogroup ID

OG0000959

Physical Location & Seq

Genomic Coordinates Reverse (-)

124644 .. 126620

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001250.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggggggagaattcggagacaaatggggaatgaggatggggatcctcaatccccgctatctaagattggggatggggcggggatgtccccaatggggatggggacgaggaatccccaatatatttttattggggattggggaggggatgggggtagaaaatgaccccggagatggggatgccttcaacgaaactggcgaggttgtgtatcgcatcgacaactatgacgacaagcacagcaatgaagtcttcctcatggatctccgcggcaaggttctcttcactctatgtgagcacaaaatgggagtgtttacgcgttggaagggctacgcagccgatgggacaaagccaatgtttcgagtaagaaagagttgcagatcaatcttcggaaaagaagagtcaagttcatacaaagtaaccatgggatctgatagcagtttctacagtttaaaaagtttgtcggccggaaaatcagcagccttcagaataacagacagtaacggaagggttgtggcggaggcgaagcgaaagcaatcgtcttcaggagttgtgttgggagatgatgtactgagtttggtagtggaggctgatgtagatcactcctttatcatggctcttgttactgtctatggcttaatcaagcgtcaaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

217

Amino Acids

23.96

Weight (kDa)

8.7

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53870 AT1G53870 AT1G53870 AT1G53870 AT1G53875 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT3G14260
fragaria_vesca	FvH4_5g02020 FvH4_6g35760
malus_domestica	MD06G1080400.v1.1 MD06G1080500.v1.1 MD06G1080600.v1.1 MD14G1099500.v1.1 MD14G1099700.v1.1 MD14G1101500.v1.1 MD17G1153800.v1.1
prunus_persica	Prupe.5G096400_v2.0.a1 Prupe.5G096500_v2.0.a1 Prupe.5G096600_v2.0.a1 Prupe.5G096700_v2.0.a1
pyrus_communis	pycom06g07730 pycom06g07750 pycom09g09080 pycom14g09790 pycom17g14650
rosa_chinensis	RchiOBHm_Chr2g0147771 RchiOBHm_Chr7g0198321 RchiOBHm_Chr7g0198341
rosa_laevigata	RLG00000003874 RLG00000003875 RLG00000003876 RLG00000020277
rosa_multiflora	Rmu_sc0000308.1_g000037 Rmu_sc0001250.1_g000024 Rmu_sc0001250.1_g000034
rosa_roxburghii	Rroxscaffold_3G00257820 Rroxscaffold_3G00257830 Rroxscaffold_3G00257840
rosa_rugosa	Rorug02G0401800 Rorug07G0046900 Rorug07G0047100 Rorug07G0047200
rosa_samantha	Rh2AG458900 Rh2BG472000 Rh2CG446200 Rh2DG480900 Rh7AG170400 Rh7AG170500 Rh7AG170600 Rh7BG173500 Rh7BG173600 Rh7BG173700 Rh7CG180700 Rh7CG180800 Rh7CG180900 Rh7DG172600 Rh7DG172800
rosa_wichuraiana	Rw2G037520 Rw7G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	267, 316
AciI	CCGC	5 cut(s)	55, 79, 265, 267, 515
AclWI	GGATC	4 cut(s)	37, 50, 267, 433
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	2 cut(s)	466, 525
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	4 cut(s)	95, 173, 174, 271
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	187
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	4 cut(s)	37, 50, 267, 433
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	2 cut(s)	332, 476
ApoI	RAATTY	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	42
BbsI	GAAGAC	2 cut(s)	241, 531
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	344, 488
BccI	CCATC	6 cut(s)	31, 67, 93, 142, 167, 332
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	442
BisI	GCNGC	3 cut(s)	268, 333, 477
BlsI	GCNGC	3 cut(s)	269, 334, 478
Bme1390I	CCNGG	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	169, 222
BpiI	GAAGAC	2 cut(s)	241, 531
BpuMI	CCSGG	1 cut(s)	168
BsaBI	GATNNNNATC	2 cut(s)	41, 594
BsaJI	CCNNGG	3 cut(s)	166, 265, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 173, 174, 271
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	247
Bse8I	GATNNNNATC	2 cut(s)	41, 594
BseDI	CCNNGG	3 cut(s)	166, 265, 420
BseGI	GGATG	6 cut(s)	42, 78, 89, 104, 153, 184
BseJI	GATNNNNATC	2 cut(s)	41, 594
BseLI	CCNNNNNNNGG	4 cut(s)	95, 173, 174, 271
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	199
BseX3I	CGGCCG	1 cut(s)	462
BseXI	GCAGC	2 cut(s)	344, 488
Bsh1236I	CGCG	2 cut(s)	267, 316
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	464
BsiEI	CGRYCG	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	168, 465
BslFI	GGGAC	3 cut(s)	72, 117, 355
BslI	CCNNNNNNNGG	4 cut(s)	95, 173, 174, 271
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	3 cut(s)	72, 117, 355
BsnI	GGCC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	5 cut(s)	42, 259, 377, 425, 595
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	5 cut(s)	55, 79, 265, 267, 515
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	1 cut(s)	561
BspFNI	CGCG	2 cut(s)	267, 316
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	4 cut(s)	37, 50, 267, 433
BsrDI	GCAATG	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	3 cut(s)	166, 265, 420
BssMI	GATC	5 cut(s)	42, 259, 377, 425, 595
BssT1I	CCWWGG	1 cut(s)	420
Bst4CI	ACNGT	3 cut(s)	446, 497, 625
Bst6I	CTCTTC	2 cut(s)	284, 390
BstDEI	CTNAG	2 cut(s)	62, 569
BstDSI	CCRYGG	2 cut(s)	265, 420
BstF5I	GGATG	6 cut(s)	42, 78, 89, 104, 153, 184
BstFNI	CGCG	2 cut(s)	267, 316
BstKTI	GATC	5 cut(s)	45, 262, 380, 428, 598
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	5 cut(s)	42, 259, 377, 425, 595
BstMCI	CGRYCG	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	442
BstUI	CGCG	2 cut(s)	267, 316
BstV1I	GCAGC	2 cut(s)	344, 488
BstV2I	GAAGAC	2 cut(s)	241, 531
BstX2I	RGATCY	3 cut(s)	42, 259, 425
BstYI	RGATCY	3 cut(s)	42, 259, 425
BstZI	CGGCCG	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	464
BtgI	CCRYGG	2 cut(s)	265, 420
BtsCI	GGATG	6 cut(s)	42, 78, 89, 104, 153, 184
Cfr42I	CCGCGG	1 cut(s)	268
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	3 cut(s)	256, 421, 610
CviJI	RGCY	8 cut(s)	327, 335, 349, 464, 479, 587, 614, 633
CviKI_1	RGCY	8 cut(s)	327, 335, 349, 464, 479, 587, 614, 633
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	2 cut(s)	62, 569
DpnI	GATC	5 cut(s)	44, 261, 379, 427, 597
DpnII	GATC	5 cut(s)	42, 259, 377, 425, 595
DraI	TTTAAA	1 cut(s)	450
EaeI	YGGCCR	1 cut(s)	462
EagI	CGGCCG	1 cut(s)	462
Eam1104I	CTCTTC	2 cut(s)	284, 390
EarI	CTCTTC	2 cut(s)	284, 390
EciI	GGCGGA	1 cut(s)	530
EclXI	CGGCCG	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	420
Eco52I	CGGCCG	1 cut(s)	462
Eco57I	CTGAAG	2 cut(s)	466, 525
EcoRI	GAATTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	3 cut(s)	259, 424, 613
FaiI	YATR	9 cut(s)	122, 225, 257, 289, 409, 422, 611, 630, 652
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	3 cut(s)	72, 117, 355
FatI	CATG	3 cut(s)	255, 420, 609
FauI	CCCGC	2 cut(s)	62, 72
Fnu4HI	GCNGC	3 cut(s)	268, 333, 477
FokI	GGATG	6 cut(s)	49, 85, 96, 111, 160, 191
Fsp4HI	GCNGC	3 cut(s)	268, 333, 477
GluI	GCNGC	3 cut(s)	268, 333, 477
HaeIII	GGCC	1 cut(s)	464
HapII	CCGG	2 cut(s)	168, 465
HgaI	GACGC	1 cut(s)	632
Hin1II	CATG	3 cut(s)	259, 424, 613
HinfI	GANTC	2 cut(s)	111, 398
HpaII	CCGG	2 cut(s)	168, 465
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	4 cut(s)	17, 389, 430, 485
Hpy188III	TCNNGA	1 cut(s)	543
Hpy8I	GTNNAC	1 cut(s)	312
HpyAV	CCTTC	4 cut(s)	193, 316, 490, 498
HpyCH4III	ACNGT	3 cut(s)	446, 497, 625
HpyCH4V	TGCA	1 cut(s)	375
HpyF3I	CTNAG	2 cut(s)	62, 569
Hsp92II	CATG	3 cut(s)	259, 424, 613
KspI	CCGCGG	1 cut(s)	268
Kzo9I	GATC	5 cut(s)	42, 259, 377, 425, 595
LpnPI	CCDG	4 cut(s)	180, 181, 478, 528
Lsp1109I	GCAGC	2 cut(s)	344, 488
LweI	GCATC	2 cut(s)	169, 222
MaeIII	GTNAC	3 cut(s)	415, 497, 619
MalI	GATC	5 cut(s)	44, 261, 379, 427, 597
MboI	GATC	5 cut(s)	42, 259, 377, 425, 595
MboII	GAAGA	5 cut(s)	241, 271, 376, 407, 531
MflI	RGATCY	3 cut(s)	42, 259, 425
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	1 cut(s)	11
MluI	ACGCGT	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	299
MnlI	CCTC	8 cut(s)	27, 56, 101, 136, 193, 263, 511, 577
MseI	TTAA	2 cut(s)	449, 635
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	2 cut(s)	168, 465
MspR9I	CCNGG	1 cut(s)	168
MvnI	CGCG	2 cut(s)	267, 316
NciI	CCSGG	1 cut(s)	168
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	5 cut(s)	42, 259, 377, 425, 595
NlaIII	CATG	3 cut(s)	259, 424, 613
NlaIV	GGNNCC	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	111
PkrI	GCNGC	3 cut(s)	269, 334, 478
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	44
PsuI	RGATCY	3 cut(s)	42, 259, 425
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
RseI	CAYNNNNRTG	1 cut(s)	240
SacII	CCGCGG	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	449, 635
SatI	GCNGC	3 cut(s)	268, 333, 477
Sau3AI	GATC	5 cut(s)	42, 259, 377, 425, 595
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	2 cut(s)	204, 276
SfaNI	GCATC	2 cut(s)	169, 222
SfcI	CTRYAG	1 cut(s)	442
Sfr303I	CCGCGG	1 cut(s)	268
SgrBI	CCGCGG	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	5 cut(s)	55, 79, 265, 267, 515
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	3 cut(s)	446, 497, 625
TaqI	TCGA	2 cut(s)	216, 358
TasI	AATT	1 cut(s)	11
TatI	WGTACW	1 cut(s)	565
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	111
Tru1I	TTAA	2 cut(s)	449, 635
Tru9I	TTAA	2 cut(s)	449, 635
TseI	GCWGC	2 cut(s)	332, 476
TspDTI	ATGAA	2 cut(s)	258, 396
TspGWI	ACGGA	1 cut(s)	516
XapI	RAATTY	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.