MD06G1080500.v1.1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000959
Physical Location & Seq
Forward (+)
19665694 .. 19666056
363 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1080500.v1.1.491

Sequence Viewer

Length: 363 bp
ATGAGCGTTTTTCCAAGTTGGAATGGCTATCAAAGCAATGATATTGGTGCCAAGAAGCCAATGTTTGAAATGAGAAAAAACTGTAGAATAAATCTTGGAAATAATAAAGGTTGTTCTTATAAAGTAACCTTGGGATCTGATAGCAATTGCTACATGTTAGAGGGTTTGAATGGTAAATCATCATCTGCTTTCAGAATAAGAGACAACAATGGAGGAGCTGTGGCAGAGGCAAAGAGGAAGCAGCCAAGTTCAGGAGTAGTTTTTAGAGATGATGTGCTCACTTTGGTGGTGGAGCCTCATGTTGATCACTCCTTCATCATGGCTCTGGTTACTGTTTATGGCTTAATTAGATATCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

121

Amino Acids

13.31

Weight (kDa)

9.27

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 5 - 113 6.2e-15 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 47
AclWI GGATC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 251
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 2 cut(s) 68, 169
AleI CACNNNNGTG 1 cut(s) 284
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 241
BanI GGYRCC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 253
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 82
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 49, 294
BsaJI CCNNGG 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 253
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 2 cut(s) 134, 304
BspLI GGNNCC 2 cut(s) 49, 294
BspPI GGATC 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 2 cut(s) 134, 304
BssT1I CCWWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 83, 334
BstKTI GATC 2 cut(s) 137, 307
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 2 cut(s) 134, 304
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
CviAII CATG 3 cut(s) 154, 299, 319
CviJI RGCY 7 cut(s) 27, 58, 218, 244, 295, 323, 342
CviKI_1 RGCY 7 cut(s) 27, 58, 218, 244, 295, 323, 342
DpnI GATC 2 cut(s) 136, 306
DpnII GATC 2 cut(s) 134, 304
Eco130I CCWWGG 1 cut(s) 129
Eco32I GATATC 1 cut(s) 353
EcoRV GATATC 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 3 cut(s) 157, 302, 322
FaiI YATR 6 cut(s) 120, 155, 300, 320, 339, 361
FatI CATG 3 cut(s) 153, 298, 318
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 242
GluI GCNGC 1 cut(s) 242
Hin1II CATG 3 cut(s) 157, 302, 322
Hpy188I TCNGA 2 cut(s) 139, 194
Hpy188III TCNNGA 1 cut(s) 252
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 2 cut(s) 83, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
Hsp92II CATG 3 cut(s) 157, 302, 322
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 134, 304
LmnI GCTCC 2 cut(s) 215, 292
LpnPI CCDG 2 cut(s) 237, 311
Lsp1109I GCAGC 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 124, 328
MalI GATC 2 cut(s) 136, 306
MboI GATC 2 cut(s) 134, 304
MfeI CAATTG 1 cut(s) 145
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 2 cut(s) 145, 345
MnlI CCTC 5 cut(s) 154, 206, 220, 228, 306
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 284
MunI CAATTG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 2 cut(s) 134, 304
NlaIII CATG 3 cut(s) 157, 302, 322
NlaIV GGNNCC 2 cut(s) 49, 294
NspI RCATGY 1 cut(s) 157
OliI CACNNNNGTG 1 cut(s) 284
PciI ACATGT 1 cut(s) 153
PkrI GCNGC 1 cut(s) 243
PscI ACATGT 1 cut(s) 153
PsiI TTATAA 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 49, 294
PsuI RGATCY 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 2 cut(s) 134, 304
SduI GDGCHC 1 cut(s) 279
SetI ASST 3 cut(s) 112, 131, 220
SfcI CTRYAG 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 2 cut(s) 145, 345
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 2 cut(s) 83, 334
TasI AATT 2 cut(s) 145, 345
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TseI GCWGC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 304
XceI RCATGY 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.