Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000959

Physical Location & Seq

Genomic Coordinates Reverse (-)

53824450 .. 53824959

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAATCCCTTGTGATGCAAGGATATGGATGCACAGCTTTCGACAAAAATGGTGAGATCGTTTATCGCATCGATAACTACGACGACAAGCACAGCAATGAAGTCTTCCTTATGGATCTCCACGGCAAGGTTCTCTTCACTCTATGTGAGCATAGAATGGGAATGCTTTCGAGTTGGAAGGGCTACGCAACCAACGGGGCTAAGCCAATGTTTCGAGTGAGAAAGAGTTGCAGATCAATCCTCGGAAATAAAGAATCTAGTAACTCGTACAAAGTAAGCATGCGATCCGACGGAAGTTGCTACAGGTTACAAGGTTTGGCGGCTGGAAAATCGGCGGCTTTCAGATTAACTGACAGTAACGGAAGAGTTGTGGCGGAGGCAAAGCGGAAGCAATCATCTTCAGGTGTTGTGTTGGGAGATGATATTTTGAGTTTGGTGGAGTCTGATGTAGATCATTCTTTCATCATGGCTCTTGTCACTGTTTATGGCTTAATCAAGCGTCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

170

Amino Acids

18.76

Weight (kDa)

9.3

Isoelectric Point (pI)

30.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	1 - 162	7.6e-26	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53870 AT1G53870 AT1G53870 AT1G53870 AT1G53875 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT3G14260
fragaria_vesca	FvH4_5g02020 FvH4_6g35760
malus_domestica	MD06G1080400.v1.1 MD06G1080500.v1.1 MD06G1080600.v1.1 MD14G1099500.v1.1 MD14G1099700.v1.1 MD14G1101500.v1.1 MD17G1153800.v1.1
prunus_persica	Prupe.5G096400_v2.0.a1 Prupe.5G096500_v2.0.a1 Prupe.5G096600_v2.0.a1 Prupe.5G096700_v2.0.a1
pyrus_communis	pycom06g07730 pycom06g07750 pycom09g09080 pycom14g09790 pycom17g14650
rosa_chinensis	RchiOBHm_Chr2g0147771 RchiOBHm_Chr7g0198321 RchiOBHm_Chr7g0198341
rosa_laevigata	RLG00000003874 RLG00000003875 RLG00000003876 RLG00000020277
rosa_multiflora	Rmu_sc0000308.1_g000037 Rmu_sc0001250.1_g000024 Rmu_sc0001250.1_g000034
rosa_roxburghii	Rroxscaffold_3G00257820 Rroxscaffold_3G00257830 Rroxscaffold_3G00257840
rosa_rugosa	Rorug02G0401800 Rorug07G0046900 Rorug07G0047100 Rorug07G0047200
rosa_samantha	Rh2AG458900 Rh2BG472000 Rh2CG446200 Rh2DG480900 Rh7AG170400 Rh7AG170500 Rh7AG170600 Rh7BG173500 Rh7BG173600 Rh7BG173700 Rh7CG180700 Rh7CG180800 Rh7CG180900 Rh7DG172600 Rh7DG172800
rosa_wichuraiana	Rw2G037520 Rw7G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	320, 335, 374, 385
AclWI	GGATC	2 cut(s)	123, 279
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
AlwI	GGATC	2 cut(s)	123, 279
Asp700I	GAANNNNTTC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	139
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	301
BisI	GCNGC	2 cut(s)	321, 336
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	2 cut(s)	322, 337
BmsI	GCATC	3 cut(s)	6, 20, 78
BpiI	GAAGAC	1 cut(s)	97
Bpu1102I	GCTNAGC	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	121, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	103
Bse8I	GATNNNNATC	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	121, 241
BseGI	GGATG	1 cut(s)	35
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	57, 115, 233, 284, 451
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	4 cut(s)	320, 335, 374, 385
BspDI	ATCGAT	1 cut(s)	72
BspPI	GGATC	2 cut(s)	123, 279
BsrDI	GCAATG	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	121, 241
BssMI	GATC	5 cut(s)	57, 115, 233, 284, 451
Bst4CI	ACNGT	2 cut(s)	356, 481
Bst6I	CTCTTC	2 cut(s)	140, 358
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	35
BstKTI	GATC	5 cut(s)	60, 118, 236, 287, 454
BstMBI	GATC	5 cut(s)	57, 115, 233, 284, 451
BstNSI	RCATGY	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	281
ClaI	ATCGAT	1 cut(s)	72
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	2 cut(s)	280, 466
CviJI	RGCY	8 cut(s)	38, 183, 200, 205, 323, 338, 470, 489
CviKI_1	RGCY	8 cut(s)	38, 183, 200, 205, 323, 338, 470, 489
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	5 cut(s)	59, 117, 235, 286, 453
DpnII	GATC	5 cut(s)	57, 115, 233, 284, 451
Eam1104I	CTCTTC	2 cut(s)	140, 358
EarI	CTCTTC	2 cut(s)	140, 358
EciI	GGCGGA	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	384
FaeI	CATG	2 cut(s)	283, 469
FaiI	YATR	8 cut(s)	27, 113, 145, 153, 281, 467, 486, 508
FalI	AAGNNNNNCTT	4 cut(s)	93, 125, 119, 151
FatI	CATG	2 cut(s)	279, 465
Fnu4HI	GCNGC	2 cut(s)	321, 336
FokI	GGATG	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	321, 336
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	2 cut(s)	321, 336
HgaI	GACGC	1 cut(s)	488
Hin1II	CATG	2 cut(s)	283, 469
HinfI	GANTC	2 cut(s)	254, 440
HphI	GGTGA	1 cut(s)	65
Hpy188I	TCNGA	4 cut(s)	245, 289, 344, 445
Hpy99I	CGWCG	2 cut(s)	86, 293
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	356, 481
HpyCH4V	TGCA	3 cut(s)	19, 33, 231
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	283, 469
Kzo9I	GATC	5 cut(s)	57, 115, 233, 284, 451
LpnPI	CCDG	3 cut(s)	289, 309, 387
LweI	GCATC	3 cut(s)	6, 20, 78
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	4 cut(s)	260, 306, 356, 475
MalI	GATC	5 cut(s)	59, 117, 235, 286, 453
MboI	GATC	5 cut(s)	57, 115, 233, 284, 451
MboII	GAAGA	4 cut(s)	97, 127, 375, 390
MflI	RGATCY	1 cut(s)	115
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	2 cut(s)	155, 312
MnlI	CCTC	2 cut(s)	251, 370
MroXI	GAANNNNTTC	1 cut(s)	166
MseI	TTAA	2 cut(s)	347, 491
MslI	CAYNNNNRTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	168
NdeII	GATC	5 cut(s)	57, 115, 233, 284, 451
NlaIII	CATG	2 cut(s)	283, 469
NmuCI	GTSAC	1 cut(s)	475
NspI	RCATGY	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	322, 337
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	347, 491
SatI	GCNGC	2 cut(s)	321, 336
Sau3AI	GATC	5 cut(s)	57, 115, 233, 284, 451
SchI	GAGTC	1 cut(s)	449
SetI	ASST	5 cut(s)	40, 132, 308, 316, 406
SfaNI	GCATC	3 cut(s)	6, 20, 78
SfcI	CTRYAG	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	96
SphI	GCATGC	1 cut(s)	283
SsiI	CCGC	4 cut(s)	320, 335, 374, 385
SspMI	CTAG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	356, 481
TaqI	TCGA	4 cut(s)	42, 72, 170, 214
TauI	GCSGC	2 cut(s)	323, 338
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	347, 491
Tru9I	TTAA	2 cut(s)	347, 491
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	475
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	3 cut(s)	17, 114, 451
TspGWI	ACGGA	2 cut(s)	306, 375
TspRI	CASTG	1 cut(s)	484
XceI	RCATGY	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.