Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000959

Physical Location & Seq

Genomic Coordinates Reverse (-)

10560323 .. 10560946

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G096700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCAAGGTTCATCCTCTTTCAATATCCAAGACTGATGATGCTTCTACTGCTAGCACTTCCTCATGTTCTAATAACAAGTACATGACCTCAAAGAGAGAAACATTCACAATATGGATGAAATCGCTTGTGATGCAAGGAAAAGGATGCACTGCGTTTGACCAAAATGGAGAGATCGTTTATCGAATCGATAACTACGACGCCAAGCACAGCAACGAAGTTTATCTCATGGATCTCCGTGGGAAACTTCTCTTCACTGTGTGTGAGAAGAAAATGTGCTTTTTTCCAAGTTGGAAGGGGTATAAAAACAATGGTGCCAATAAGGCATTGTTTCAACTGAGAAAAAGTTGCAGATCAATTCCTGGAAAGAAAGGGTTTGCTTATAAAGTAACAATGAGATCTGATGGCAGCTCTTACCGGCTAGAGGGTTTGAGTGGTAAATCATCAGAATTCAGAATAACAGATAGCAATGGAGGAGTTGTAGCAGAGACAAAGAGAAAGCAGTCAAGTTCAGGAGTTGTATTGGGAGATGATGTGTTCACTGTGGTGGTGGAGCCTCATGTTGATCACTCCTTTATCATGGCCCTTGTCACTGTTCATGGCTTAATTAGACATCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

208

Amino Acids

23.08

Weight (kDa)

9.48

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53870 AT1G53870 AT1G53870 AT1G53870 AT1G53875 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT3G14260
fragaria_vesca	FvH4_5g02020 FvH4_6g35760
malus_domestica	MD06G1080400.v1.1 MD06G1080500.v1.1 MD06G1080600.v1.1 MD14G1099500.v1.1 MD14G1099700.v1.1 MD14G1101500.v1.1 MD17G1153800.v1.1
prunus_persica	Prupe.5G096400_v2.0.a1 Prupe.5G096500_v2.0.a1 Prupe.5G096600_v2.0.a1 Prupe.5G096700_v2.0.a1
pyrus_communis	pycom06g07730 pycom06g07750 pycom09g09080 pycom14g09790 pycom17g14650
rosa_chinensis	RchiOBHm_Chr2g0147771 RchiOBHm_Chr7g0198321 RchiOBHm_Chr7g0198341
rosa_laevigata	RLG00000003874 RLG00000003875 RLG00000003876 RLG00000020277
rosa_multiflora	Rmu_sc0000308.1_g000037 Rmu_sc0001250.1_g000024 Rmu_sc0001250.1_g000034
rosa_roxburghii	Rroxscaffold_3G00257820 Rroxscaffold_3G00257830 Rroxscaffold_3G00257840
rosa_rugosa	Rorug02G0401800 Rorug07G0046900 Rorug07G0047100 Rorug07G0047200
rosa_samantha	Rh2AG458900 Rh2BG472000 Rh2CG446200 Rh2DG480900 Rh7AG170400 Rh7AG170500 Rh7AG170600 Rh7BG173500 Rh7BG173600 Rh7BG173700 Rh7CG180700 Rh7CG180800 Rh7CG180900 Rh7DG172600 Rh7DG172800
rosa_wichuraiana	Rw2G037520 Rw7G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	314
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	201
AdeI	CACNNNGTG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	24, 335
AjnI	CCWGG	1 cut(s)	361
AleI	CACNNNNGTG	1 cut(s)	545
AluBI	AGCT	1 cut(s)	411
AluI	AGCT	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	240
AoxI	GGCC	2 cut(s)	3, 582
ApeKI	GCWGC	1 cut(s)	408
ApoI	RAATTY	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	583
AsuNHI	GCTAGC	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	420
BccI	CCATC	1 cut(s)	398
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	2 cut(s)	54, 422
BglI	GCCNNNNNGGC	1 cut(s)	323
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	583
BmiI	GGNNCC	2 cut(s)	316, 555
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	3 cut(s)	31, 123, 137
BmtI	GCTAGC	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	6, 238
BsaXI	ACNNNNNCTCC	6 cut(s)	162, 192, 465, 495, 519, 549
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse118I	RCCGGY	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	363
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	6, 238
BseGI	GGATG	3 cut(s)	13, 123, 152
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	420
BshFI	GGCC	2 cut(s)	5, 584
BshNI	GGYRCC	1 cut(s)	314
BshVI	ATCGAT	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	482
BsnI	GGCC	2 cut(s)	5, 584
Bsp143I	GATC	5 cut(s)	174, 232, 353, 398, 565
BspANI	GGCC	2 cut(s)	5, 584
BspCNI	CTCAG	1 cut(s)	330
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	316, 555
BspOI	GCTAGC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	475
BsrFI	RCCGGY	1 cut(s)	417
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	2 cut(s)	6, 238
BssMI	GATC	5 cut(s)	174, 232, 353, 398, 565
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	3 cut(s)	259, 544, 595
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	3 cut(s)	13, 123, 152
BstKTI	GATC	5 cut(s)	177, 235, 356, 401, 568
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	5 cut(s)	174, 232, 353, 398, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 133, 323
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	232, 398
BstYI	RGATCY	2 cut(s)	232, 398
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	5, 584
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	238
BtsCI	GGATG	3 cut(s)	13, 123, 152
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	4 cut(s)	150, 255, 540, 591
Cac8I	GCNNGC	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	1 cut(s)	583
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	6 cut(s)	66, 85, 229, 560, 580, 599
CviJI	RGCY	6 cut(s)	5, 411, 421, 556, 584, 603
CviKI_1	RGCY	6 cut(s)	5, 411, 421, 556, 584, 603
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	5 cut(s)	176, 234, 355, 400, 567
DpnII	GATC	5 cut(s)	174, 232, 353, 398, 565
DraIII	CACNNNGTG	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	6 cut(s)	69, 88, 232, 563, 583, 602
FatI	CATG	6 cut(s)	65, 84, 228, 559, 579, 598
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	1 cut(s)	409
FokI	GGATG	2 cut(s)	130, 159
Fsp4HI	GCNGC	1 cut(s)	409
FspBI	CTAG	2 cut(s)	54, 422
GluI	GCNGC	1 cut(s)	409
HaeIII	GGCC	2 cut(s)	5, 584
HapII	CCGG	1 cut(s)	418
HgaI	GACGC	1 cut(s)	209
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	6 cut(s)	69, 88, 232, 563, 583, 602
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	3 cut(s)	403, 448, 455
Hpy188III	TCNNGA	1 cut(s)	513
Hpy8I	GTNNAC	1 cut(s)	540
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	3 cut(s)	259, 544, 595
HpyCH4V	TGCA	3 cut(s)	136, 150, 351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 133, 323
HpyF3I	CTNAG	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	6 cut(s)	69, 88, 232, 563, 583, 602
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	5 cut(s)	174, 232, 353, 398, 565
LmnI	GCTCC	1 cut(s)	553
LpnPI	CCDG	4 cut(s)	348, 375, 431, 498
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	3 cut(s)	31, 123, 137
MaeI	CTAG	2 cut(s)	54, 422
MaeIII	GTNAC	2 cut(s)	388, 589
MalI	GATC	5 cut(s)	176, 234, 355, 400, 567
MboI	GATC	5 cut(s)	174, 232, 353, 398, 565
MboII	GAAGA	2 cut(s)	244, 280
MflI	RGATCY	2 cut(s)	232, 398
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	357, 449, 606
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	6 cut(s)	27, 73, 100, 418, 467, 567
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	605
MslI	CAYNNNNRTG	1 cut(s)	545
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	3 cut(s)	50, 133, 323
NdeII	GATC	5 cut(s)	174, 232, 353, 398, 565
NheI	GCTAGC	1 cut(s)	53
NlaIII	CATG	6 cut(s)	69, 88, 232, 563, 583, 602
NlaIV	GGNNCC	2 cut(s)	316, 555
NmuCI	GTSAC	1 cut(s)	589
OliI	CACNNNNGTG	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	186
PfoI	TCCNGGA	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	410
PsiI	TTATAA	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	316, 555
PspPI	GGNCC	1 cut(s)	583
PsuI	RGATCY	2 cut(s)	232, 398
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	545
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	1 cut(s)	409
Sau3AI	GATC	5 cut(s)	174, 232, 353, 398, 565
Sau96I	GGNCC	1 cut(s)	583
ScrFI	CCNGG	1 cut(s)	363
SetI	ASST	3 cut(s)	12, 92, 413
SfaNI	GCATC	3 cut(s)	31, 123, 137
SmiMI	CAYNNNNRTG	1 cut(s)	545
Sse9I	AATT	3 cut(s)	357, 449, 606
SspMI	CTAG	2 cut(s)	54, 422
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	3 cut(s)	259, 544, 595
TaqI	TCGA	2 cut(s)	184, 189
TasI	AATT	3 cut(s)	357, 449, 606
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TscAI	CASTG	4 cut(s)	157, 262, 547, 598
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	1 cut(s)	408
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	2 cut(s)	134, 587
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	4 cut(s)	157, 262, 547, 598
XapI	RAATTY	1 cut(s)	449
XspI	CTAG	2 cut(s)	54, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.