Rroxscaffold_3G00257820

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000959
Physical Location & Seq
Reverse (-)
52108442 .. 52109062
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257820.1

Sequence Viewer

Length: 621 bp
ATGGCCAAGGTTCATCCTCTCACAGTAGTGCCCACTGAAGATGCTTCTTCAAGTACTACTTCATATTCTAATAAATATATGACTTCAAAAAGTGAAACATTCACAGTATGGATGAAATCGCTTTTGATGCAAGGAAATGGATGCACAGCCTTCAACGAAACTGGCGAGGTTGTGTATCGCATCGACAACTATGACGACAAGCACAGCAATGAAGTCTTCCTCATGGATCTCCGCGGCAAGGTTCTCTTCACTCTATGTGAGCACAAAATGGGACTGTTTACGCGTTGGAAGGGCTACGCAGCCGATGGGACAAAGCCAATGTTTCGAGTAAGAAAGAGTTGCAGATCAATCTTCGGAAACGAAGAGTCAGGTTCATACAAAGTAACCATGGGATCTGATAGCAGTTTCTACAGTTTAAAAAGTTTGTCGGCCAGAAAATCAGCAGCCTTCAGAATAACAGACAGTAACGGAAGAGTTGTGGCGGAGGCGAAGCGAAAGCAATCATCTTCAGGAGTTGTGTTGGGAGATGATGTACTGAGTTTGGTAGTGGAAGCTGATGTAGATCACTCCTTTATCATGGCTCTTGTTACTGTCTATGGCTTAATCAAGCGTCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

206

Amino Acids

22.91

Weight (kDa)

9.05

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 33 - 199 8.1e-33 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 234, 283
AciI CCGC 3 cut(s) 232, 234, 482
AclWI GGATC 2 cut(s) 234, 400
AcoI YGGCCR 2 cut(s) 3, 429
AcuI CTGAAG 3 cut(s) 57, 433, 492
AfaI GTAC 2 cut(s) 55, 534
AfiI CCNNNNNNNGG 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 281
AgsI TTSAA 3 cut(s) 51, 87, 154
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 1 cut(s) 554
AluI AGCT 1 cut(s) 554
Alw21I GWGCWC 1 cut(s) 264
AlwI GGATC 2 cut(s) 234, 400
AoxI GGCC 2 cut(s) 3, 429
ApeKI GCWGC 2 cut(s) 299, 443
BaeGI GKGCMC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 311, 455
BccI CCATC 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 409
BisI GCNGC 3 cut(s) 235, 300, 444
BlsI GCNGC 3 cut(s) 236, 301, 445
BmcAI AGTACT 1 cut(s) 55
BmsI GCATC 4 cut(s) 31, 117, 131, 189
BpiI GAAGAC 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 3 cut(s) 6, 232, 387
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 561
BseDI CCNNGG 3 cut(s) 6, 232, 387
BseGI GGATG 3 cut(s) 13, 117, 146
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 1 cut(s) 166
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 2 cut(s) 311, 455
Bsh1236I CGCG 2 cut(s) 234, 283
BshFI GGCC 2 cut(s) 5, 431
BsiHKAI GWGCWC 1 cut(s) 264
BslFI GGGAC 2 cut(s) 285, 322
BslI CCNNNNNNNGG 1 cut(s) 238
BsmFI GGGAC 2 cut(s) 285, 322
BsnI GGCC 2 cut(s) 5, 431
Bsp1286I GDGCHC 2 cut(s) 33, 264
Bsp143I GATC 4 cut(s) 226, 344, 392, 562
Bsp19I CCATGG 1 cut(s) 387
BspACI CCGC 3 cut(s) 232, 234, 482
BspANI GGCC 2 cut(s) 5, 431
BspCNI CTCAG 1 cut(s) 528
BspFNI CGCG 2 cut(s) 234, 283
BspPI GGATC 2 cut(s) 234, 400
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 6, 232, 387
BssMI GATC 4 cut(s) 226, 344, 392, 562
BssT1I CCWWGG 2 cut(s) 6, 387
Bst4CI ACNGT 6 cut(s) 25, 106, 276, 413, 464, 592
Bst6I CTCTTC 3 cut(s) 251, 357, 466
BstDEI CTNAG 1 cut(s) 536
BstDSI CCRYGG 2 cut(s) 232, 387
BstF5I GGATG 3 cut(s) 13, 117, 146
BstFNI CGCG 2 cut(s) 234, 283
BstKTI GATC 4 cut(s) 229, 347, 395, 565
BstMBI GATC 4 cut(s) 226, 344, 392, 562
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 409
BstSLI GKGCMC 1 cut(s) 33
BstUI CGCG 2 cut(s) 234, 283
BstV1I GCAGC 2 cut(s) 311, 455
BstV2I GAAGAC 1 cut(s) 208
BstX2I RGATCY 2 cut(s) 226, 392
BstYI RGATCY 2 cut(s) 226, 392
BsuRI GGCC 2 cut(s) 5, 431
BtgI CCRYGG 2 cut(s) 232, 387
BtsCI GGATG 3 cut(s) 13, 117, 146
BtsIMutI CAGTG 1 cut(s) 33
Cfr42I CCGCGG 1 cut(s) 235
CseI GACGC 1 cut(s) 599
Csp6I GTAC 2 cut(s) 54, 533
CviAII CATG 3 cut(s) 223, 388, 577
CviQI GTAC 2 cut(s) 54, 533
DdeI CTNAG 1 cut(s) 536
DpnI GATC 4 cut(s) 228, 346, 394, 564
DpnII GATC 4 cut(s) 226, 344, 392, 562
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 2 cut(s) 3, 429
Eam1104I CTCTTC 3 cut(s) 251, 357, 466
EarI CTCTTC 3 cut(s) 251, 357, 466
EciI GGCGGA 1 cut(s) 497
Eco130I CCWWGG 2 cut(s) 6, 387
Eco57I CTGAAG 3 cut(s) 57, 433, 492
EcoT14I CCWWGG 2 cut(s) 6, 387
ErhI CCWWGG 2 cut(s) 6, 387
FaeI CATG 3 cut(s) 226, 391, 580
FalI AAGNNNNNCTT 4 cut(s) 43, 75, 230, 262
FaqI GGGAC 2 cut(s) 285, 322
FatI CATG 3 cut(s) 222, 387, 576
Fnu4HI GCNGC 3 cut(s) 235, 300, 444
FokI GGATG 2 cut(s) 124, 153
Fsp4HI GCNGC 3 cut(s) 235, 300, 444
GluI GCNGC 3 cut(s) 235, 300, 444
HaeIII GGCC 2 cut(s) 5, 431
HgaI GACGC 1 cut(s) 599
Hin1II CATG 3 cut(s) 226, 391, 580
HinfI GANTC 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 3 cut(s) 356, 397, 452
Hpy188III TCNNGA 1 cut(s) 510
Hpy8I GTNNAC 1 cut(s) 279
HpyAV CCTTC 3 cut(s) 160, 283, 457
HpyCH4III ACNGT 6 cut(s) 25, 106, 276, 413, 464, 592
HpyCH4V TGCA 3 cut(s) 130, 144, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 536
Hsp92II CATG 3 cut(s) 226, 391, 580
KspI CCGCGG 1 cut(s) 235
Kzo9I GATC 4 cut(s) 226, 344, 392, 562
LpnPI CCDG 4 cut(s) 147, 354, 445, 495
Lsp1109I GCAGC 2 cut(s) 311, 455
LweI GCATC 4 cut(s) 31, 117, 131, 189
MaeIII GTNAC 3 cut(s) 382, 464, 586
MalI GATC 4 cut(s) 228, 346, 394, 564
MboI GATC 4 cut(s) 226, 344, 392, 562
MboII GAAGA 8 cut(s) 39, 50, 208, 238, 343, 374, 483, 498
MflI RGATCY 2 cut(s) 226, 392
MhlI GDGCHC 2 cut(s) 33, 264
MlsI TGGCCA 1 cut(s) 5
MluI ACGCGT 1 cut(s) 281
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 4 cut(s) 27, 160, 230, 478
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 416, 602
MslI CAYNNNNRTG 2 cut(s) 26, 207
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 234
MvnI CGCG 2 cut(s) 234, 283
MwoI GCNNNNNNNGC 1 cut(s) 127
NcoI CCATGG 1 cut(s) 387
NdeII GATC 4 cut(s) 226, 344, 392, 562
NlaIII CATG 3 cut(s) 226, 391, 580
OliI CACNNNNGTG 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PkrI GCNGC 3 cut(s) 236, 301, 445
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PsuI RGATCY 2 cut(s) 226, 392
RsaI GTAC 2 cut(s) 55, 534
RsaNI GTAC 2 cut(s) 54, 533
RseI CAYNNNNRTG 2 cut(s) 26, 207
SacII CCGCGG 1 cut(s) 235
SaqAI TTAA 2 cut(s) 416, 602
SatI GCNGC 3 cut(s) 235, 300, 444
Sau3AI GATC 4 cut(s) 226, 344, 392, 562
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 1 cut(s) 374
SduI GDGCHC 2 cut(s) 33, 264
SetI ASST 5 cut(s) 12, 171, 243, 373, 556
SfaNI GCATC 4 cut(s) 31, 117, 131, 189
SfcI CTRYAG 1 cut(s) 409
Sfr303I CCGCGG 1 cut(s) 235
SgrBI CCGCGG 1 cut(s) 235
SmiMI CAYNNNNRTG 2 cut(s) 26, 207
SsiI CCGC 3 cut(s) 232, 234, 482
StyI CCWWGG 2 cut(s) 6, 387
TaaI ACNGT 6 cut(s) 25, 106, 276, 413, 464, 592
TaqI TCGA 2 cut(s) 183, 325
TatI WGTACW 2 cut(s) 53, 532
TauI GCSGC 1 cut(s) 237
Tru1I TTAA 2 cut(s) 416, 602
Tru9I TTAA 2 cut(s) 416, 602
TscAI CASTG 1 cut(s) 40
TseI GCWGC 2 cut(s) 299, 443
TspDTI ATGAA 4 cut(s) 51, 128, 225, 363
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 1 cut(s) 40
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.