LURP-one-related
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SNF2-rel_dom | PF00176 | 210 - 455 | 4.8e-29 | SNF2-related domain |
| ResIII | PF04851 | 220 - 362 | 1.7e-07 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 220 - 364 | 3.4e-07 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 527 - 628 | 3.3e-16 | Helicase conserved C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 405 |
| Acc65I | GGTACC | 1 cut(s) | 535 |
| AccB1I | GGYRCC | 1 cut(s) | 535 |
| AccBSI | CCGCTC | 1 cut(s) | 2391 |
| AccI | GTMKAC | 1 cut(s) | 498 |
| AccII | CGCG | 3 cut(s) | 177, 2919, 3201 |
| AccIII | TCCGGA | 2 cut(s) | 142, 3583 |
| AclWI | GGATC | 7 cut(s) | 101, 173, 180, 3341, 3354, 3575, 3588 |
| AcoI | YGGCCR | 1 cut(s) | 2473 |
| AcuI | CTGAAG | 5 cut(s) | 1407, 1838, 2553, 2918, 3338 |
| AdeI | CACNNNGTG | 1 cut(s) | 3476 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 214, 291, 634, 1707, 2138, 2495, 3356 |
| AflIII | ACRYGT | 4 cut(s) | 1257, 1300, 1810, 2066 |
| AhlI | ACTAGT | 1 cut(s) | 3158 |
| AjnI | CCWGG | 4 cut(s) | 1132, 2131, 3573, 3631 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3671, 3703 |
| Alw21I | GWGCWC | 4 cut(s) | 161, 1873, 3249, 3472 |
| Alw26I | GTCTC | 5 cut(s) | 142, 1314, 2039, 2284, 2336 |
| AlwI | GGATC | 7 cut(s) | 101, 173, 180, 3341, 3354, 3575, 3588 |
| Aor13HI | TCCGGA | 2 cut(s) | 142, 3583 |
| ApeKI | GCWGC | 8 cut(s) | 50, 168, 592, 729, 1382, 1461, 1474, 2142 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1069, 1101, 1562, 1594, 3606, 3638 |
| AseI | ATTAAT | 1 cut(s) | 2813 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2514, 2716, 3186 |
| Asp718I | GGTACC | 1 cut(s) | 535 |
| AspLEI | GCGC | 6 cut(s) | 173, 1059, 1971, 2916, 2921, 3641 |
| AspS9I | GGNCC | 6 cut(s) | 145, 691, 2793, 2902, 2977, 3571 |
| AsuC2I | CCSGG | 3 cut(s) | 209, 233, 306 |
| AsuHPI | GGTGA | 9 cut(s) | 911, 1475, 1610, 1830, 2072, 2405, 2587, 3371, 3419 |
| AvaII | GGWCC | 3 cut(s) | 145, 2977, 3571 |
| BalI | TGGCCA | 1 cut(s) | 2475 |
| BamHI | GGATCC | 2 cut(s) | 3346, 3580 |
| BanI | GGYRCC | 1 cut(s) | 535 |
| BanII | GRGCYC | 5 cut(s) | 161, 958, 1873, 3083, 3699 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 735, 767, 2547, 2579 |
| BbsI | GAAGAC | 4 cut(s) | 1810, 2442, 3117, 3690 |
| Bbv12I | GWGCWC | 4 cut(s) | 161, 1873, 3249, 3472 |
| BbvCI | CCTCAGC | 1 cut(s) | 1860 |
| BbvI | GCAGC | 8 cut(s) | 62, 155, 579, 716, 1369, 1448, 1486, 2129 |
| BceAI | ACGGC | 4 cut(s) | 269, 1081, 1956, 3500 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 55, 89 |
| BciT130I | CCWGG | 4 cut(s) | 1134, 2133, 3575, 3633 |
| BciVI | GTATCC | 2 cut(s) | 1918, 3161 |
| BcnI | CCSGG | 3 cut(s) | 209, 233, 306 |
| BcoDI | GTCTC | 5 cut(s) | 142, 1314, 2039, 2284, 2336 |
| BcuI | ACTAGT | 1 cut(s) | 3158 |
| BfaI | CTAG | 9 cut(s) | 842, 888, 941, 1014, 3159, 3194, 3419, 3465, 3751 |
| BfmI | CTRYAG | 1 cut(s) | 707 |
| BfoI | RGCGCY | 2 cut(s) | 2917, 3642 |
| BfuI | GTATCC | 2 cut(s) | 1918, 3161 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 601 |
| BglII | AGATCT | 2 cut(s) | 2207, 3167 |
| BlpI | GCTNAGC | 1 cut(s) | 2146 |
| BmcAI | AGTACT | 1 cut(s) | 1629 |
| Bme1390I | CCNGG | 7 cut(s) | 209, 233, 306, 1134, 2133, 3575, 3633 |
| Bme18I | GGWCC | 3 cut(s) | 145, 2977, 3571 |
| BmgT120I | GGNCC | 6 cut(s) | 145, 691, 2793, 2902, 2977, 3571 |
| BmiI | GGNNCC | 5 cut(s) | 537, 3096, 3348, 3582, 3630 |
| BmrFI | CCNGG | 7 cut(s) | 209, 233, 306, 1134, 2133, 3575, 3633 |
| BmrI | ACTGGG | 1 cut(s) | 272 |
| BmsI | GCATC | 7 cut(s) | 345, 1171, 1839, 1993, 2548, 2622, 3655 |
| BmuI | ACTGGG | 1 cut(s) | 272 |
| BpiI | GAAGAC | 4 cut(s) | 1810, 2442, 3117, 3690 |
| Bpu10I | CCTNAGC | 3 cut(s) | 55, 1860, 2151 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2146 |
| BpuEI | CTTGAG | 3 cut(s) | 653, 2693, 3350 |
| BpuMI | CCSGG | 3 cut(s) | 209, 233, 306 |
| Bsa29I | ATCGAT | 1 cut(s) | 43 |
| BsaAI | YACGTR | 1 cut(s) | 2987 |
| BsaI | GGTCTC | 2 cut(s) | 142, 2284 |
| BsaWI | WCCGGW | 2 cut(s) | 142, 3583 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 319, 349 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 214, 291, 634, 1707, 2138, 2495, 3356 |
| Bse1I | ACTGG | 4 cut(s) | 278, 1541, 1587, 2424 |
| Bse3DI | GCAATG | 1 cut(s) | 1545 |
| BseAI | TCCGGA | 2 cut(s) | 142, 3583 |
| BseBI | CCWGG | 4 cut(s) | 1134, 2133, 3575, 3633 |
| BseCI | ATCGAT | 1 cut(s) | 43 |
| BseGI | GGATG | 7 cut(s) | 359, 568, 834, 1441, 1537, 2275, 3670 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 214, 291, 634, 1707, 2138, 2495, 3356 |
| BseMI | GCAATG | 1 cut(s) | 1545 |
| BseNI | ACTGG | 4 cut(s) | 278, 1541, 1587, 2424 |
| BseRI | GAGGAG | 2 cut(s) | 1262, 3608 |
| BseXI | GCAGC | 8 cut(s) | 62, 155, 579, 716, 1369, 1448, 1486, 2129 |
| BseYI | CCCAGC | 4 cut(s) | 766, 1141, 1511, 2740 |
| Bsh1236I | CGCG | 3 cut(s) | 177, 2919, 3201 |
| BshNI | GGYRCC | 1 cut(s) | 535 |
| BshVI | ATCGAT | 1 cut(s) | 43 |
| BsiHKAI | GWGCWC | 4 cut(s) | 161, 1873, 3249, 3472 |
| BsiSI | CCGG | 6 cut(s) | 143, 209, 232, 257, 305, 3584 |
| BslFI | GGGAC | 4 cut(s) | 961, 1090, 1163, 2904 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 214, 291, 634, 1707, 2138, 2495, 3356 |
| BsmAI | GTCTC | 5 cut(s) | 142, 1314, 2039, 2284, 2336 |
| BsmFI | GGGAC | 4 cut(s) | 961, 1090, 1163, 2904 |
| BsmI | GAATGC | 1 cut(s) | 3416 |
| Bso31I | GGTCTC | 2 cut(s) | 142, 2284 |
| Bsp1286I | GDGCHC | 7 cut(s) | 161, 958, 1873, 3083, 3249, 3472, 3699 |
| Bsp13I | TCCGGA | 2 cut(s) | 142, 3583 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2146 |
| BspDI | ATCGAT | 1 cut(s) | 43 |
| BspEI | TCCGGA | 2 cut(s) | 142, 3583 |
| BspFNI | CGCG | 3 cut(s) | 177, 2919, 3201 |
| BspHI | TCATGA | 3 cut(s) | 735, 853, 3528 |
| BspLI | GGNNCC | 5 cut(s) | 537, 3096, 3348, 3582, 3630 |
| BspMAI | CTGCAG | 1 cut(s) | 711 |
| BspPI | GGATC | 7 cut(s) | 101, 173, 180, 3341, 3354, 3575, 3588 |
| BspQI | GCTCTTC | 2 cut(s) | 2568, 3687 |
| BspT107I | GGYRCC | 1 cut(s) | 535 |
| BspTNI | GGTCTC | 2 cut(s) | 142, 2284 |
| BsrBI | CCGCTC | 1 cut(s) | 2391 |
| BsrDI | GCAATG | 1 cut(s) | 1545 |
| BsrI | ACTGG | 4 cut(s) | 278, 1541, 1587, 2424 |
| BssT1I | CCWWGG | 4 cut(s) | 476, 1204, 2636, 3090 |
| Bst2UI | CCWGG | 4 cut(s) | 1134, 2133, 3575, 3633 |
| Bst4CI | ACNGT | 9 cut(s) | 383, 513, 1178, 1276, 2845, 3134, 3149, 3230, 3724 |
| Bst6I | CTCTTC | 4 cut(s) | 309, 462, 2568, 3687 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1382, 3371, 3476 |
| BstBAI | YACGTR | 1 cut(s) | 2987 |
| BstDSI | CCRYGG | 1 cut(s) | 110 |
| BstF5I | GGATG | 7 cut(s) | 359, 568, 834, 1441, 1537, 2275, 3670 |
| BstFNI | CGCG | 3 cut(s) | 177, 2919, 3201 |
| BstH2I | RGCGCY | 2 cut(s) | 2917, 3642 |
| BstHHI | GCGC | 6 cut(s) | 173, 1059, 1971, 2916, 2921, 3641 |
| BstMAI | GTCTC | 5 cut(s) | 142, 1314, 2039, 2284, 2336 |
| BstNI | CCWGG | 4 cut(s) | 1134, 2133, 3575, 3633 |
| BstNSI | RCATGY | 8 cut(s) | 729, 940, 1261, 1304, 1814, 2070, 2756, 3374 |
| BstSCI | CCNGG | 7 cut(s) | 207, 231, 304, 1132, 2131, 3573, 3631 |
| BstSFI | CTRYAG | 1 cut(s) | 707 |
| BstSNI | TACGTA | 1 cut(s) | 2987 |
| BstUI | CGCG | 3 cut(s) | 177, 2919, 3201 |
| BstV1I | GCAGC | 8 cut(s) | 62, 155, 579, 716, 1369, 1448, 1486, 2129 |
| BstV2I | GAAGAC | 4 cut(s) | 1810, 2442, 3117, 3690 |
| BstX2I | RGATCY | 5 cut(s) | 185, 2207, 3167, 3346, 3580 |
| BstYI | RGATCY | 5 cut(s) | 185, 2207, 3167, 3346, 3580 |
| Bsu15I | ATCGAT | 1 cut(s) | 43 |
| BsuI | GTATCC | 2 cut(s) | 1918, 3161 |
| BsuTUI | ATCGAT | 1 cut(s) | 43 |
| BtgI | CCRYGG | 1 cut(s) | 110 |
| BtgZI | GCGATG | 1 cut(s) | 1422 |
| BtsCI | GGATG | 7 cut(s) | 359, 568, 834, 1441, 1537, 2275, 3670 |
| BtsI | GCAGTG | 1 cut(s) | 704 |
| BtsIMutI | CAGTG | 3 cut(s) | 388, 704, 2417 |
| CciI | TCATGA | 3 cut(s) | 735, 853, 3528 |
| CfoI | GCGC | 6 cut(s) | 173, 1059, 1971, 2916, 2921, 3641 |
| Cfr13I | GGNCC | 6 cut(s) | 145, 691, 2793, 2902, 2977, 3571 |
| ClaI | ATCGAT | 1 cut(s) | 43 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 262, 297, 3642, 3677 |
| DraI | TTTAAA | 3 cut(s) | 298, 876, 1159 |
| DraIII | CACNNNGTG | 1 cut(s) | 3476 |
| EaeI | YGGCCR | 1 cut(s) | 2473 |
| Eam1104I | CTCTTC | 4 cut(s) | 309, 462, 2568, 3687 |
| EarI | CTCTTC | 4 cut(s) | 309, 462, 2568, 3687 |
| EciI | GGCGGA | 1 cut(s) | 678 |
| Ecl136II | GAGCTC | 2 cut(s) | 159, 1871 |
| Eco105I | TACGTA | 1 cut(s) | 2987 |
| Eco130I | CCWWGG | 4 cut(s) | 476, 1204, 2636, 3090 |
| Eco24I | GRGCYC | 5 cut(s) | 161, 958, 1873, 3083, 3699 |
| Eco31I | GGTCTC | 2 cut(s) | 142, 2284 |
| Eco47I | GGWCC | 3 cut(s) | 145, 2977, 3571 |
| Eco53kI | GAGCTC | 2 cut(s) | 159, 1871 |
| Eco57I | CTGAAG | 5 cut(s) | 1407, 1838, 2553, 2918, 3338 |
| EcoICRI | GAGCTC | 2 cut(s) | 159, 1871 |
| EcoRI | GAATTC | 1 cut(s) | 2765 |
| EcoRII | CCWGG | 4 cut(s) | 1132, 2131, 3573, 3631 |
| EcoT14I | CCWWGG | 4 cut(s) | 476, 1204, 2636, 3090 |
| EcoT22I | ATGCAT | 1 cut(s) | 3367 |
| EcoT38I | GRGCYC | 5 cut(s) | 161, 958, 1873, 3083, 3699 |
| ErhI | CCWWGG | 4 cut(s) | 476, 1204, 2636, 3090 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1017, 1049 |
| FaqI | GGGAC | 4 cut(s) | 961, 1090, 1163, 2904 |
| FauI | CCCGC | 4 cut(s) | 182, 303, 1768, 2424 |
| FblI | GTMKAC | 1 cut(s) | 498 |
| FokI | GGATG | 7 cut(s) | 346, 575, 821, 1448, 1524, 2282, 3677 |
| FriOI | GRGCYC | 5 cut(s) | 161, 958, 1873, 3083, 3699 |
| FspBI | CTAG | 9 cut(s) | 842, 888, 941, 1014, 3159, 3194, 3419, 3465, 3751 |
| GlaI | GCGC | 6 cut(s) | 172, 1058, 1970, 2915, 2920, 3640 |
| GsaI | CCCAGC | 4 cut(s) | 770, 1145, 1515, 2744 |
| HaeII | RGCGCY | 2 cut(s) | 2917, 3642 |
| HapII | CCGG | 6 cut(s) | 143, 209, 232, 257, 305, 3584 |
| HhaI | GCGC | 6 cut(s) | 173, 1059, 1971, 2916, 2921, 3641 |
| Hin6I | GCGC | 6 cut(s) | 171, 1057, 1969, 2914, 2919, 3639 |
| HinP1I | GCGC | 6 cut(s) | 171, 1057, 1969, 2914, 2919, 3639 |
| HincII | GTYRAC | 3 cut(s) | 205, 1900, 3492 |
| HindII | GTYRAC | 3 cut(s) | 205, 1900, 3492 |
| HpaII | CCGG | 6 cut(s) | 143, 209, 232, 257, 305, 3584 |
| HphI | GGTGA | 9 cut(s) | 911, 1475, 1610, 1830, 2072, 2405, 2587, 3371, 3419 |
| Hpy166II | GTNNAC | 6 cut(s) | 205, 499, 1900, 2980, 3056, 3492 |
| Hpy8I | GTNNAC | 6 cut(s) | 205, 499, 1900, 2980, 3056, 3492 |
| Hpy99I | CGWCG | 1 cut(s) | 3679 |
| HpyCH4III | ACNGT | 9 cut(s) | 383, 513, 1178, 1276, 2845, 3134, 3149, 3230, 3724 |
| HpyCH4IV | ACGT | 2 cut(s) | 1288, 2986 |
| HpySE526I | ACGT | 2 cut(s) | 1288, 2986 |
| HspAI | GCGC | 6 cut(s) | 171, 1057, 1969, 2914, 2919, 3639 |
| Kpn2I | TCCGGA | 2 cut(s) | 142, 3583 |
| KpnI | GGTACC | 1 cut(s) | 539 |
| LguI | GCTCTTC | 2 cut(s) | 2568, 3687 |
| LmnI | GCTCC | 5 cut(s) | 444, 1825, 3244, 3498, 3636 |
| Lsp1109I | GCAGC | 8 cut(s) | 62, 155, 579, 716, 1369, 1448, 1486, 2129 |
| LweI | GCATC | 7 cut(s) | 345, 1171, 1839, 1993, 2548, 2622, 3655 |
| MaeI | CTAG | 9 cut(s) | 842, 888, 941, 1014, 3159, 3194, 3419, 3465, 3751 |
| MaeII | ACGT | 2 cut(s) | 1288, 2986 |
| MaeIII | GTNAC | 8 cut(s) | 1260, 1836, 1938, 3026, 3161, 3176, 3460, 3533 |
| MbiI | CCGCTC | 1 cut(s) | 2391 |
| MfeI | CAATTG | 2 cut(s) | 1430, 2523 |
| MflI | RGATCY | 5 cut(s) | 185, 2207, 3167, 3346, 3580 |
| MhlI | GDGCHC | 7 cut(s) | 161, 958, 1873, 3083, 3249, 3472, 3699 |
| MlsI | TGGCCA | 1 cut(s) | 2475 |
| MluNI | TGGCCA | 1 cut(s) | 2475 |
| MlyI | GAGTC | 9 cut(s) | 254, 983, 1586, 1946, 2180, 2373, 2587, 2684, 3427 |
| MmeI | TCCRAC | 5 cut(s) | 540, 1756, 2304, 3204, 3374 |
| Mox20I | TGGCCA | 1 cut(s) | 2475 |
| Mph1103I | ATGCAT | 1 cut(s) | 3367 |
| MroI | TCCGGA | 2 cut(s) | 142, 3583 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2514, 2716, 3186 |
| MscI | TGGCCA | 1 cut(s) | 2475 |
| MslI | CAYNNNNRTG | 2 cut(s) | 3456, 3663 |
| Msp20I | TGGCCA | 1 cut(s) | 2475 |
| MspA1I | CMGCKG | 2 cut(s) | 1775, 2696 |
| MspI | CCGG | 6 cut(s) | 143, 209, 232, 257, 305, 3584 |
| MspR9I | CCNGG | 7 cut(s) | 209, 233, 306, 1134, 2133, 3575, 3633 |
| MteI | GCGCNGCGC | 1 cut(s) | 2917 |
| MunI | CAATTG | 2 cut(s) | 1430, 2523 |
| Mva1269I | GAATGC | 1 cut(s) | 3416 |
| MvaI | CCWGG | 4 cut(s) | 1134, 2133, 3575, 3633 |
| MvnI | CGCG | 3 cut(s) | 177, 2919, 3201 |
| NciI | CCSGG | 3 cut(s) | 209, 233, 306 |
| NlaIV | GGNNCC | 5 cut(s) | 537, 3096, 3348, 3582, 3630 |
| NmeAIII | GCCGAG | 1 cut(s) | 58 |
| NmuCI | GTSAC | 3 cut(s) | 1836, 1938, 3176 |
| NsiI | ATGCAT | 1 cut(s) | 3367 |
| NspI | RCATGY | 8 cut(s) | 729, 940, 1261, 1304, 1814, 2070, 2756, 3374 |
| PaeI | GCATGC | 4 cut(s) | 729, 940, 2756, 3374 |
| PagI | TCATGA | 3 cut(s) | 735, 853, 3528 |
| PciI | ACATGT | 4 cut(s) | 1257, 1300, 1810, 2066 |
| PciSI | GCTCTTC | 2 cut(s) | 2568, 3687 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 260 |
| PctI | GAATGC | 1 cut(s) | 3416 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2514, 2716, 3186 |
| PfeI | GAWTC | 7 cut(s) | 40, 80, 611, 2442, 2595, 2627, 3715 |
| PflFI | GACNNNGTC | 1 cut(s) | 669 |
| PleI | GAGTC | 9 cut(s) | 254, 982, 1585, 1945, 2179, 2372, 2586, 2683, 3427 |
| PpsI | GAGTC | 9 cut(s) | 254, 982, 1585, 1945, 2179, 2372, 2586, 2683, 3427 |
| Ppu21I | YACGTR | 1 cut(s) | 2987 |
| PscI | ACATGT | 4 cut(s) | 1257, 1300, 1810, 2066 |
| PshBI | ATTAAT | 1 cut(s) | 2813 |
| PsiI | TTATAA | 1 cut(s) | 405 |
| Psp124BI | GAGCTC | 2 cut(s) | 161, 1873 |
| Psp6I | CCWGG | 4 cut(s) | 1132, 2131, 3573, 3631 |
| PspFI | CCCAGC | 4 cut(s) | 766, 1141, 1511, 2740 |
| PspGI | CCWGG | 4 cut(s) | 1132, 2131, 3573, 3631 |
| PspN4I | GGNNCC | 5 cut(s) | 537, 3096, 3348, 3582, 3630 |
| PspPI | GGNCC | 6 cut(s) | 145, 691, 2793, 2902, 2977, 3571 |
| PstI | CTGCAG | 1 cut(s) | 711 |
| PsuI | RGATCY | 5 cut(s) | 185, 2207, 3167, 3346, 3580 |
| PsyI | GACNNNGTC | 1 cut(s) | 669 |
| RseI | CAYNNNNRTG | 2 cut(s) | 3456, 3663 |
| SacI | GAGCTC | 2 cut(s) | 161, 1873 |
| SapI | GCTCTTC | 2 cut(s) | 2568, 3687 |
| Sau96I | GGNCC | 6 cut(s) | 145, 691, 2793, 2902, 2977, 3571 |
| ScaI | AGTACT | 1 cut(s) | 1629 |
| SchI | GAGTC | 9 cut(s) | 254, 983, 1586, 1946, 2180, 2373, 2587, 2684, 3427 |
| ScrFI | CCNGG | 7 cut(s) | 209, 233, 306, 1134, 2133, 3575, 3633 |
| SduI | GDGCHC | 7 cut(s) | 161, 958, 1873, 3083, 3249, 3472, 3699 |
| SfaNI | GCATC | 7 cut(s) | 345, 1171, 1839, 1993, 2548, 2622, 3655 |
| SfcI | CTRYAG | 1 cut(s) | 707 |
| SinI | GGWCC | 3 cut(s) | 145, 2977, 3571 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 3456, 3663 |
| SmlI | CTYRAG | 3 cut(s) | 632, 2672, 3329 |
| SmoI | CTYRAG | 3 cut(s) | 632, 2672, 3329 |
| SnaBI | TACGTA | 1 cut(s) | 2987 |
| SpeI | ACTAGT | 1 cut(s) | 3158 |
| SphI | GCATGC | 4 cut(s) | 729, 940, 2756, 3374 |
| SspI | AATATT | 2 cut(s) | 1608, 3104 |
| SspMI | CTAG | 9 cut(s) | 842, 888, 941, 1014, 3159, 3194, 3419, 3465, 3751 |
| SstI | GAGCTC | 2 cut(s) | 161, 1873 |
| StyD4I | CCNGG | 7 cut(s) | 207, 231, 304, 1132, 2131, 3573, 3631 |
| StyI | CCWWGG | 4 cut(s) | 476, 1204, 2636, 3090 |
| TaaI | ACNGT | 9 cut(s) | 383, 513, 1178, 1276, 2845, 3134, 3149, 3230, 3724 |
| TaiI | ACGT | 2 cut(s) | 1291, 2989 |
| TaqI | TCGA | 5 cut(s) | 43, 243, 946, 988, 2566 |
| TatI | WGTACW | 5 cut(s) | 417, 1348, 1627, 1639, 3282 |
| TauI | GCSGC | 2 cut(s) | 2696, 2919 |
| TfiI | GAWTC | 7 cut(s) | 40, 80, 611, 2442, 2595, 2627, 3715 |
| TscAI | CASTG | 3 cut(s) | 388, 711, 2424 |
| TseFI | GTSAC | 3 cut(s) | 1836, 1938, 3176 |
| TseI | GCWGC | 8 cut(s) | 50, 168, 592, 729, 1382, 1461, 1474, 2142 |
| Tsp45I | GTSAC | 3 cut(s) | 1836, 1938, 3176 |
| TspGWI | ACGGA | 3 cut(s) | 99, 1650, 2454 |
| TspRI | CASTG | 3 cut(s) | 388, 711, 2424 |
| Tth111I | GACNNNGTC | 1 cut(s) | 669 |
| VpaK11BI | GGWCC | 3 cut(s) | 145, 2977, 3571 |
| VspI | ATTAAT | 1 cut(s) | 2813 |
| XceI | RCATGY | 8 cut(s) | 729, 940, 1261, 1304, 1814, 2070, 2756, 3374 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 845, 2987 |
| XmiI | GTMKAC | 1 cut(s) | 498 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2514, 2716, 3186 |
| XspI | CTAG | 9 cut(s) | 842, 888, 941, 1014, 3159, 3194, 3419, 3465, 3751 |
| ZrmI | AGTACT | 1 cut(s) | 1629 |
| Zsp2I | ATGCAT | 1 cut(s) | 3367 |