Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000959

Physical Location & Seq

Genomic Coordinates Reverse (-)

53841812 .. 53842420

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003876

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCCAGAGTTCATCCAATTCTAGTAGTACCAAGGATTGATAATGCTTCTGTTAGTACCTCTCCATGTTCTGAACCATACATGACCTCAAAGAGGGAAACATTCACTATATGGATGAAGTCCCTTGTGATGCAAGGAAATGGATGCACAGCGTACGACGAAAATGGTGAGATTGTGTATCGTGTTGATAACTACGACAACAAGCACAGCAATGAAGTCTATCTCATGGATCTCCGTGGCAAAGTTCTGTTTACTCTATGTGAGCAGAAAATGTGCATTTTTAGACCTAATTGGGAGGCTTATGAGTCCAATGGGTCTGACACGCCATTTTTTCGAGTCAGAAAGAGCAAAATTTTCAGAGGAGAGTCTTCTTATAAGGTAACCATGCCATCTGATGGAAGTTGTTACATTTTAGAAGCCGGTGGGAAATCAACATTTAGAATAAGAGATGGCAATGGAGGAGTTGTAGCCGAGGCAAAGCGAAAGCAATCGTCTTCAGGGGTAGAATTCGGAGATGATGTACTGAGTTTAGTGGTGGAGCCTCATGTGGATCACTCCTTCATCATGGCTCTTGTTACAGTTTATGGCTTAATCAAACGTCAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOR

Protein Analysis

203

Amino Acids

22.78

Weight (kDa)

7.63

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	34 - 195	1.8e-35	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53870 AT1G53870 AT1G53870 AT1G53870 AT1G53875 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT1G53890 AT3G14260
fragaria_vesca	FvH4_5g02020 FvH4_6g35760
malus_domestica	MD06G1080400.v1.1 MD06G1080500.v1.1 MD06G1080600.v1.1 MD14G1099500.v1.1 MD14G1099700.v1.1 MD14G1101500.v1.1 MD17G1153800.v1.1
prunus_persica	Prupe.5G096400_v2.0.a1 Prupe.5G096500_v2.0.a1 Prupe.5G096600_v2.0.a1 Prupe.5G096700_v2.0.a1
pyrus_communis	pycom06g07730 pycom06g07750 pycom09g09080 pycom14g09790 pycom17g14650
rosa_chinensis	RchiOBHm_Chr2g0147771 RchiOBHm_Chr7g0198321 RchiOBHm_Chr7g0198341
rosa_laevigata	RLG00000003874 RLG00000003875 RLG00000003876 RLG00000020277
rosa_multiflora	Rmu_sc0000308.1_g000037 Rmu_sc0001250.1_g000024 Rmu_sc0001250.1_g000034
rosa_roxburghii	Rroxscaffold_3G00257820 Rroxscaffold_3G00257830 Rroxscaffold_3G00257840
rosa_rugosa	Rorug02G0401800 Rorug07G0046900 Rorug07G0047100 Rorug07G0047200
rosa_samantha	Rh2AG458900 Rh2BG472000 Rh2CG446200 Rh2DG480900 Rh7AG170400 Rh7AG170500 Rh7AG170600 Rh7BG173500 Rh7BG173600 Rh7BG173700 Rh7CG180700 Rh7CG180800 Rh7CG180900 Rh7DG172600 Rh7DG172800
rosa_wichuraiana	Rw2G037520 Rw7G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccB7I	CCANNNNNTGG	1 cut(s)	395
AclWI	GGATC	2 cut(s)	237, 558
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	351, 506
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	4 cut(s)	30, 58, 155, 522
AfiI	CCNNNNNNNGG	2 cut(s)	93, 395
AlwI	GGATC	2 cut(s)	237, 558
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	351, 506
AsuHPI	GGTGA	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	360, 486
BccI	CCATC	3 cut(s)	389, 397, 443
BfaI	CTAG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	540
BmsI	GCATC	2 cut(s)	120, 134
BpiI	GAAGAC	2 cut(s)	360, 486
BsaJI	CCNNGG	3 cut(s)	32, 235, 471
BsaXI	ACNNNNNCTCC	4 cut(s)	450, 480, 504, 534
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 395
Bse118I	RCCGGY	1 cut(s)	419
Bse3DI	GCAATG	2 cut(s)	217, 460
BseDI	CCNNGG	3 cut(s)	32, 235, 471
BseGI	GGATG	3 cut(s)	13, 120, 149
BseLI	CCNNNNNNNGG	2 cut(s)	93, 395
BseMI	GCAATG	2 cut(s)	217, 460
BseMII	CTCAG	1 cut(s)	515
BseRI	GAGGAG	2 cut(s)	375, 474
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	420
BsiWI	CGTACG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	93, 395
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	229, 550
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	540
BspPI	GGATC	2 cut(s)	237, 558
BsrDI	GCAATG	2 cut(s)	217, 460
BsrFI	RCCGGY	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	32, 235, 471
BssMI	GATC	2 cut(s)	229, 550
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	580
BstDEI	CTNAG	1 cut(s)	524
BstDSI	CCRYGG	1 cut(s)	235
BstEII	GGTNACC	1 cut(s)	379
BstENI	CCTNNNNNAGG	1 cut(s)	91
BstF5I	GGATG	3 cut(s)	13, 120, 149
BstKTI	GATC	2 cut(s)	232, 553
BstMBI	GATC	2 cut(s)	229, 550
BstPI	GGTNACC	1 cut(s)	379
BstV2I	GAAGAC	2 cut(s)	360, 486
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	13, 120, 149
Cfr10I	RCCGGY	1 cut(s)	419
Csp6I	GTAC	4 cut(s)	29, 57, 154, 521
CviAII	CATG	6 cut(s)	66, 82, 226, 385, 545, 565
CviJI	RGCY	7 cut(s)	5, 299, 419, 470, 541, 569, 588
CviKI_1	RGCY	7 cut(s)	5, 299, 419, 470, 541, 569, 588
CviQI	GTAC	4 cut(s)	29, 57, 154, 521
DdeI	CTNAG	1 cut(s)	524
DpnI	GATC	2 cut(s)	231, 552
DpnII	GATC	2 cut(s)	229, 550
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	480
Eco91I	GGTNACC	1 cut(s)	379
EcoNI	CCTNNNNNAGG	1 cut(s)	91
EcoO65I	GGTNACC	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	6 cut(s)	69, 85, 229, 388, 548, 568
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	6 cut(s)	65, 81, 225, 384, 544, 564
FokI	GGATG	2 cut(s)	127, 156
FspBI	CTAG	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	420
Hin1II	CATG	6 cut(s)	69, 85, 229, 388, 548, 568
HinfI	GANTC	3 cut(s)	305, 336, 365
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	7 cut(s)	73, 319, 341, 359, 394, 512, 603
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	568
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	3 cut(s)	133, 147, 276
HpyF3I	CTNAG	1 cut(s)	524
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	6 cut(s)	69, 85, 229, 388, 548, 568
Kzo9I	GATC	2 cut(s)	229, 550
LmnI	GCTCC	1 cut(s)	538
LpnPI	CCDG	3 cut(s)	19, 433, 483
LweI	GCATC	2 cut(s)	120, 134
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	3 cut(s)	379, 404, 574
MalI	GATC	2 cut(s)	231, 552
MboI	GATC	2 cut(s)	229, 550
MboII	GAAGA	2 cut(s)	360, 486
MflI	RGATCY	1 cut(s)	229
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	18, 289, 351, 506
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	314, 345, 374
MnlI	CCTC	8 cut(s)	70, 87, 97, 289, 353, 452, 466, 552
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	590
MslI	CAYNNNNRTG	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	420
NdeII	GATC	2 cut(s)	229, 550
NlaIII	CATG	6 cut(s)	69, 85, 229, 388, 548, 568
NlaIV	GGNNCC	1 cut(s)	540
NmeAIII	GCCGAG	1 cut(s)	496
Pfl23II	CGTACG	1 cut(s)	153
PflMI	CCANNNNNTGG	1 cut(s)	395
PleI	GAGTC	3 cut(s)	313, 344, 373
PpsI	GAGTC	3 cut(s)	313, 344, 373
PsiI	TTATAA	1 cut(s)	375
PspEI	GGTNACC	1 cut(s)	379
PspLI	CGTACG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	540
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	4 cut(s)	30, 58, 155, 522
RsaNI	GTAC	4 cut(s)	29, 57, 154, 521
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	590
Sau3AI	GATC	2 cut(s)	229, 550
SchI	GAGTC	3 cut(s)	314, 345, 374
SetI	ASST	5 cut(s)	62, 89, 289, 381, 601
SfaNI	GCATC	2 cut(s)	120, 134
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	4 cut(s)	18, 289, 351, 506
SspMI	CTAG	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	580
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	1 cut(s)	334
TasI	AATT	4 cut(s)	18, 289, 351, 506
TatI	WGTACW	1 cut(s)	520
Tru1I	TTAA	1 cut(s)	590
Tru9I	TTAA	1 cut(s)	590
TspDTI	ATGAA	3 cut(s)	131, 228, 550
TspGWI	ACGGA	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	91
XapI	RAATTY	2 cut(s)	351, 506
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.