RLG00000020277

LURP-one-related 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000959
Physical Location & Seq
Reverse (-)
63168408 .. 63169205
798 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020277

Sequence Viewer

Length: 603 bp
ATGGCAAAGGTTCATCCCCAAGCACCACTTTCTTCTTCATCCCCTGGCTACTTCACTTCAAAACAAGAAACATTCACCATATGGATGAAGTCTCTCATATTGAATGGCCATGGTTGCACTGTTTTTGATTCTAACGGTCAGATCGTGTATCGTGTAGATAATTACGACTCTAGAGGTAGAGCTAAAGTTCATCTTATGGATTTGAATGGCCAAATCCTATTCACCATACTAAGAAAGAAATCCAAATTTCTTGGTGTCTGGGAGGGATACAGATCCAGTAATGGTAAAGAGATCAACCTGAAAAATTCACCCGGTTTTCAAGTTGGGAGAAGCTTTAAAGGCAAGTCAGCATGTAAAGTCATCGTGGGACTAGACAAGAATCAAATACAGCAATACAGAATAGAGAGCTGGAGTAAAGGAAAGTCAGCCTGCAAGATACTAGACAAGTTTGGAAGACTTGTTGCAGAGGTAAAGAGAAAGCAGTCAACTTGTGGAGTGGTACTGGGAGAAGATGTTTTGACACTGGTGGTAGAGCCCTTCATGGATCACTCTCTTATAGTAGGGCTTCTTGTTGTGTATGGTCTCATCAACCGTAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

201

Amino Acids

22.36

Weight (kDa)

9.83

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 24 - 193 1.7e-35 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 267, 552
AcoI YGGCCR 2 cut(s) 106, 208
AcsI RAATTY 2 cut(s) 245, 304
AfaI GTAC 1 cut(s) 501
AgsI TTSAA 4 cut(s) 60, 103, 205, 320
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 3 cut(s) 182, 333, 408
AluI AGCT 3 cut(s) 182, 333, 408
Alw26I GTCTC 2 cut(s) 96, 587
AlwI GGATC 2 cut(s) 267, 552
AoxI GGCC 2 cut(s) 106, 208
ApoI RAATTY 2 cut(s) 245, 304
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 3 cut(s) 67, 214, 300
BalI TGGCCA 2 cut(s) 108, 210
BanII GRGCYC 1 cut(s) 537
BbsI GAAGAC 1 cut(s) 460
BciT130I CCWGG 1 cut(s) 45
BciVI GTATCC 1 cut(s) 260
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 96, 587
BfaI CTAG 3 cut(s) 171, 371, 440
BfuI GTATCC 1 cut(s) 260
Bme1390I CCNGG 2 cut(s) 45, 312
BmrFI CCNGG 2 cut(s) 45, 312
BmrI ACTGGG 1 cut(s) 512
BmuI ACTGGG 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 460
BpmI CTGGAG 1 cut(s) 430
BpuMI CCSGG 1 cut(s) 312
BsaBI GATNNNNATC 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 2 cut(s) 43, 109
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bse1I ACTGG 3 cut(s) 276, 507, 528
Bse8I GATNNNNATC 1 cut(s) 271
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 43, 109
BseGI GGATG 3 cut(s) 13, 38, 90
BseJI GATNNNNATC 1 cut(s) 271
BseNI ACTGG 3 cut(s) 276, 507, 528
BshFI GGCC 2 cut(s) 108, 210
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 381
BsmAI GTCTC 2 cut(s) 96, 587
BsmFI GGGAC 1 cut(s) 381
BsnI GGCC 2 cut(s) 108, 210
Bso31I GGTCTC 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 537
Bsp143I GATC 4 cut(s) 141, 272, 291, 544
Bsp19I CCATGG 1 cut(s) 109
BspANI GGCC 2 cut(s) 108, 210
BspPI GGATC 2 cut(s) 267, 552
BspTNI GGTCTC 1 cut(s) 587
BsrI ACTGG 3 cut(s) 276, 507, 528
BssECI CCNNGG 2 cut(s) 43, 109
BssMI GATC 4 cut(s) 141, 272, 291, 544
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 3 cut(s) 121, 137, 593
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 3 cut(s) 13, 38, 90
BstKTI GATC 4 cut(s) 144, 275, 294, 547
BstMAI GTCTC 2 cut(s) 96, 587
BstMBI GATC 4 cut(s) 141, 272, 291, 544
BstMWI GCNNNNNNNGC 2 cut(s) 114, 339
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 2 cut(s) 43, 310
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 2 cut(s) 108, 210
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 3 cut(s) 13, 38, 90
BtsIMutI CAGTG 2 cut(s) 117, 521
Cac8I GCNNGC 1 cut(s) 430
Csp6I GTAC 1 cut(s) 500
CviAII CATG 3 cut(s) 110, 351, 541
CviJI RGCY 9 cut(s) 48, 108, 182, 210, 333, 408, 428, 535, 565
CviKI_1 RGCY 9 cut(s) 48, 108, 182, 210, 333, 408, 428, 535, 565
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 1 cut(s) 230
DpnI GATC 4 cut(s) 143, 274, 293, 546
DpnII GATC 4 cut(s) 141, 272, 291, 544
DraI TTTAAA 1 cut(s) 337
EaeI YGGCCR 2 cut(s) 106, 208
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 537
Eco31I GGTCTC 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 3 cut(s) 113, 354, 544
FalI AAGNNNNNCTT 4 cut(s) 12, 44, 177, 209
FaqI GGGAC 1 cut(s) 381
FatI CATG 3 cut(s) 109, 350, 540
FauNDI CATATG 1 cut(s) 80
FokI GGATG 2 cut(s) 25, 97
FriOI GRGCYC 1 cut(s) 537
FspBI CTAG 3 cut(s) 171, 371, 440
GsuI CTGGAG 1 cut(s) 430
HaeIII GGCC 2 cut(s) 108, 210
HapII CCGG 1 cut(s) 312
Hin1II CATG 3 cut(s) 113, 354, 544
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 3 cut(s) 128, 167, 379
HpaII CCGG 1 cut(s) 312
HphI GGTGA 3 cut(s) 67, 214, 300
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 486
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 3 cut(s) 121, 137, 593
HpyCH4V TGCA 3 cut(s) 117, 432, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 339
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 3 cut(s) 113, 354, 544
Kzo9I GATC 4 cut(s) 141, 272, 291, 544
MaeI CTAG 3 cut(s) 171, 371, 440
MalI GATC 4 cut(s) 143, 274, 293, 546
MboI GATC 4 cut(s) 141, 272, 291, 544
MboII GAAGA 4 cut(s) 24, 27, 465, 521
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 537
MlsI TGGCCA 2 cut(s) 108, 210
MluCI AATT 4 cut(s) 160, 245, 304, 596
MluNI TGGCCA 2 cut(s) 108, 210
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 3 cut(s) 167, 256, 460
Mox20I TGGCCA 2 cut(s) 108, 210
MscI TGGCCA 2 cut(s) 108, 210
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 2 cut(s) 108, 210
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 2 cut(s) 45, 312
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 114, 339
NciI CCSGG 1 cut(s) 312
NcoI CCATGG 1 cut(s) 109
NdeI CATATG 1 cut(s) 80
NdeII GATC 4 cut(s) 141, 272, 291, 544
NlaIII CATG 3 cut(s) 113, 354, 544
NspI RCATGY 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 2 cut(s) 128, 379
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 336
Sau3AI GATC 4 cut(s) 141, 272, 291, 544
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 2 cut(s) 45, 312
SduI GDGCHC 1 cut(s) 537
SetI ASST 7 cut(s) 12, 178, 184, 300, 335, 410, 471
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 4 cut(s) 160, 245, 304, 596
SspMI CTAG 3 cut(s) 171, 371, 440
StyD4I CCNGG 2 cut(s) 43, 310
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 3 cut(s) 121, 137, 593
TasI AATT 4 cut(s) 160, 245, 304, 596
TfiI GAWTC 2 cut(s) 128, 379
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 2 cut(s) 124, 528
TspDTI ATGAA 4 cut(s) 27, 101, 179, 529
TspRI CASTG 2 cut(s) 124, 528
XapI RAATTY 2 cut(s) 245, 304
XbaI TCTAGA 1 cut(s) 170
XceI RCATGY 1 cut(s) 354
XspI CTAG 3 cut(s) 171, 371, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.