Rroxscaffold_3G00257830

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000959
Physical Location & Seq
Reverse (-)
52111957 .. 52112313
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257830.1

Sequence Viewer

Length: 357 bp
ATGGGAATGCTTTCGCGTTGGAAGGGCTACGCAACCAACGGGGCTAAGCCAATGTTTCGAGTGAGAAAGAGTTGCAGATCAATCCTCGGAAACAAAGAGTCTAGTAACTCGTACAAAGTAAGTATGGGATCCAACGGAAGTTGCTACAGGTTACAAGGTTTGGCGGCTGGAAAATCAGCAGCTTTCAGATTAACTGACAGTAACGGAAGAGTTGTGGCGGAAGCAAAGCGCAAGCAATCATCTTCAGGTGTTGTGTTGGGAGATGATAATTTGAGTTTGGTGGTTGAGTCTGATGTAGATCATTCTTTCACCACGGCTCTTGTCACTGTTTATGGCTTAATCAAGCGTCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

118

Amino Acids

12.73

Weight (kDa)

10.07

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 5 - 111 7.8e-14 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 16
AciI CCGC 2 cut(s) 164, 218
AclWI GGATC 2 cut(s) 123, 136
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 1 cut(s) 113
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
AlwI GGATC 2 cut(s) 123, 136
ApeKI GCWGC 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 10
AspLEI GCGC 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 301
BamHI GGATCC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 330
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 145
BisI GCNGC 2 cut(s) 165, 180
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 2 cut(s) 166, 181
BmiI GGNNCC 1 cut(s) 130
Bpu1102I GCTNAGC 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 85, 312
Bse8I GATNNNNATC 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 85, 312
BseJI GATNNNNATC 1 cut(s) 297
BseXI GCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 16
BsmI GAATGC 1 cut(s) 12
Bsp143I GATC 3 cut(s) 77, 128, 298
Bsp1720I GCTNAGC 1 cut(s) 45
BspACI CCGC 2 cut(s) 164, 218
BspFNI CGCG 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 2 cut(s) 123, 136
BssECI CCNNGG 2 cut(s) 85, 312
BssMI GATC 3 cut(s) 77, 128, 298
Bst4CI ACNGT 2 cut(s) 200, 328
Bst6I CTCTTC 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 45
BstDSI CCRYGG 1 cut(s) 312
BstFNI CGCG 1 cut(s) 16
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 3 cut(s) 80, 131, 301
BstMBI GATC 3 cut(s) 77, 128, 298
BstSFI CTRYAG 1 cut(s) 145
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 233
CfoI GCGC 1 cut(s) 231
CseI GACGC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 112
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviJI RGCY 7 cut(s) 27, 44, 49, 167, 182, 317, 336
CviKI_1 RGCY 7 cut(s) 27, 44, 49, 167, 182, 317, 336
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 1 cut(s) 45
DpnI GATC 3 cut(s) 79, 130, 300
DpnII GATC 3 cut(s) 77, 128, 298
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
EciI GGCGGA 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 228
FaiI YATR 3 cut(s) 125, 333, 355
Fnu4HI GCNGC 2 cut(s) 165, 180
Fsp4HI GCNGC 2 cut(s) 165, 180
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 230
GluI GCNGC 2 cut(s) 165, 180
HgaI GACGC 1 cut(s) 335
HhaI GCGC 1 cut(s) 231
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 2 cut(s) 98, 287
HphI GGTGA 1 cut(s) 301
Hpy188I TCNGA 3 cut(s) 89, 188, 292
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 200, 328
HpyCH4V TGCA 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 45
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 3 cut(s) 77, 128, 298
LpnPI CCDG 3 cut(s) 133, 153, 231
Lsp1109I GCAGC 1 cut(s) 191
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 4 cut(s) 104, 150, 200, 322
MalI GATC 3 cut(s) 79, 130, 300
MboI GATC 3 cut(s) 77, 128, 298
MboII GAAGA 2 cut(s) 219, 234
MflI RGATCY 1 cut(s) 128
MluCI AATT 1 cut(s) 268
MlyI GAGTC 2 cut(s) 107, 296
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 1 cut(s) 95
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 2 cut(s) 191, 338
Mva1269I GAATGC 1 cut(s) 12
MvnI CGCG 1 cut(s) 16
NdeII GATC 3 cut(s) 77, 128, 298
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 322
PctI GAATGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 10
PkrI GCNGC 2 cut(s) 166, 181
PleI GAGTC 2 cut(s) 106, 295
PpsI GAGTC 2 cut(s) 106, 295
PspN4I GGNNCC 1 cut(s) 130
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 191, 338
SatI GCNGC 2 cut(s) 165, 180
Sau3AI GATC 3 cut(s) 77, 128, 298
SchI GAGTC 2 cut(s) 107, 296
SetI ASST 4 cut(s) 152, 160, 184, 250
SfcI CTRYAG 1 cut(s) 145
Sse9I AATT 1 cut(s) 268
SsiI CCGC 2 cut(s) 164, 218
SspMI CTAG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 200, 328
TaqI TCGA 1 cut(s) 58
TasI AATT 1 cut(s) 268
TauI GCSGC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 191, 338
Tru9I TTAA 2 cut(s) 191, 338
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 322
TspGWI ACGGA 2 cut(s) 150, 219
TspRI CASTG 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.