pycom09g09080

LURP-one-related 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000959
Physical Location & Seq
Forward (+)
7215541 .. 7216436
896 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g09080.1

Sequence Viewer

Length: 600 bp
ATGATAAAGGTTCACCCTGAGGCACCACTCTCCTCCCCTGCCGAATACTTTACTTCGAAACAAGAAACATTCACCATATGGATGAAGTCACTCATACTGAATGGCAATGGCTGCACGGTCTTTGATTCGAATGGCAAAATTGTGTATCGGGTAGATAACTATGACTGCAAATGTAGAGGAGAAGTTTATCTTATGGATCTGGAAGGAAAAACCTTATTCACCATACAAAGAAAGAAATTCAATTTGCTTGGCCTTTGGGAGGGCTACAGATCTACAGATAAAGAGATGAACCCAAAAAAGCCTGGATTTCAAGTAAAAAAAAGTTATAGGTTGTGTAGAGGAAGGTCGCAGTGTAAGGTTGTTGTAGGGCTAGACAAGAACCAACCACACCAATACAGAATAGAAAGCTTGAGCAGCAAGTCATCCTACAAGATACTTGACAAGTTTGGAAGACCAGTTGCAGAGGTAAAGAGGAAACAATCAACATGTGGAGTGGTTCTAGGAGACGATGTTTTGACAATGGTAGTAGAGCCGTTCATAGATCATAGTCTCATCGTAGGGCTTCTTGTTGTGTATGGCCTCATCAACCGTAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

200

Amino Acids

22.74

Weight (kDa)

9.45

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 23 - 192 3.8e-36 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 485
AgsI TTSAA 2 cut(s) 241, 311
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 1 cut(s) 408
AluI AGCT 1 cut(s) 408
Alw26I GTCTC 2 cut(s) 498, 554
AlwI GGATC 1 cut(s) 204
AoxI GGCC 2 cut(s) 250, 577
ApeKI GCWGC 2 cut(s) 111, 414
ApoI RAATTY 1 cut(s) 236
AsuHPI GGTGA 3 cut(s) 5, 64, 211
AsuII TTCGAA 2 cut(s) 56, 128
AxyI CCTNAGG 1 cut(s) 18
BanI GGYRCC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 457
BbvI GCAGC 2 cut(s) 98, 426
BceAI ACGGC 1 cut(s) 517
BciT130I CCWGG 1 cut(s) 303
BcoDI GTCTC 2 cut(s) 498, 554
BfaI CTAG 2 cut(s) 371, 500
BfmI CTRYAG 2 cut(s) 265, 273
BglII AGATCT 1 cut(s) 269
BisI GCNGC 2 cut(s) 112, 415
BlsI GCNGC 2 cut(s) 113, 416
Bme1390I CCNGG 1 cut(s) 303
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 457
Bpu14I TTCGAA 2 cut(s) 56, 128
BpuEI CTTGAG 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 455
Bse21I CCTNAGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 303
BseGI GGATG 2 cut(s) 87, 422
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 2 cut(s) 22, 192
BseXI GCAGC 2 cut(s) 98, 426
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 2 cut(s) 252, 579
BshNI GGYRCC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 498, 554
BsmBI CGTCTC 1 cut(s) 498
BsnI GGCC 2 cut(s) 252, 579
Bsp119I TTCGAA 2 cut(s) 56, 128
Bsp143I GATC 3 cut(s) 196, 269, 541
BspANI GGCC 2 cut(s) 252, 579
BspCNI CTCAG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 1 cut(s) 204
BspT104I TTCGAA 2 cut(s) 56, 128
BspT107I GGYRCC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 112
BsrI ACTGG 1 cut(s) 455
BssMI GATC 3 cut(s) 196, 269, 541
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 118, 590
BstAPI GCANNNNNTGC 1 cut(s) 111
BstBI TTCGAA 2 cut(s) 56, 128
BstDEI CTNAG 1 cut(s) 18
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 87, 422
BstKTI GATC 3 cut(s) 199, 272, 544
BstMAI GTCTC 2 cut(s) 498, 554
BstMBI GATC 3 cut(s) 196, 269, 541
BstMWI GCNNNNNNNGC 2 cut(s) 111, 414
BstNI CCWGG 1 cut(s) 303
BstNSI RCATGY 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 2 cut(s) 265, 273
BstV1I GCAGC 2 cut(s) 98, 426
BstV2I GAAGAC 1 cut(s) 457
BstX2I RGATCY 2 cut(s) 196, 269
BstYI RGATCY 2 cut(s) 196, 269
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 2 cut(s) 252, 579
BtsCI GGATG 2 cut(s) 87, 422
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 1 cut(s) 356
CviAII CATG 1 cut(s) 486
CviJI RGCY 9 cut(s) 111, 252, 264, 301, 370, 408, 532, 562, 579
CviKI_1 RGCY 9 cut(s) 111, 252, 264, 301, 370, 408, 532, 562, 579
DdeI CTNAG 1 cut(s) 18
DpnI GATC 3 cut(s) 198, 271, 543
DpnII GATC 3 cut(s) 196, 269, 541
Eco81I CCTNAGG 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 498
FaeI CATG 1 cut(s) 489
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 1 cut(s) 485
FauNDI CATATG 1 cut(s) 77
Fnu4HI GCNGC 2 cut(s) 112, 415
FokI GGATG 2 cut(s) 94, 409
Fsp4HI GCNGC 2 cut(s) 112, 415
FspBI CTAG 2 cut(s) 371, 500
GluI GCNGC 2 cut(s) 112, 415
HaeIII GGCC 2 cut(s) 252, 579
Hin1II CATG 1 cut(s) 489
HindIII AAGCTT 1 cut(s) 406
HinfI GANTC 1 cut(s) 125
HphI GGTGA 3 cut(s) 5, 64, 211
Hpy166II GTNNAC 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 197, 336
HpyCH4III ACNGT 2 cut(s) 118, 590
HpyCH4V TGCA 3 cut(s) 114, 168, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 414
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 1 cut(s) 489
Kzo9I GATC 3 cut(s) 196, 269, 541
LpnPI CCDG 6 cut(s) 30, 51, 185, 288, 315, 468
Lsp1109I GCAGC 2 cut(s) 98, 426
MaeI CTAG 2 cut(s) 371, 500
MaeIII GTNAC 1 cut(s) 87
MalI GATC 3 cut(s) 198, 271, 543
MboI GATC 3 cut(s) 196, 269, 541
MboII GAAGA 1 cut(s) 462
MflI RGATCY 2 cut(s) 196, 269
MluCI AATT 3 cut(s) 138, 236, 241
MnlI CCTC 8 cut(s) 13, 43, 170, 253, 332, 457, 465, 590
MslI CAYNNNNRTG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 111, 414
NdeI CATATG 1 cut(s) 77
NdeII GATC 3 cut(s) 196, 269, 541
NlaIII CATG 1 cut(s) 489
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 87
NspI RCATGY 1 cut(s) 489
NspV TTCGAA 2 cut(s) 56, 128
PciI ACATGT 1 cut(s) 485
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 113, 416
PscI ACATGT 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 24
PsuI RGATCY 2 cut(s) 196, 269
RseI CAYNNNNRTG 1 cut(s) 80
SatI GCNGC 2 cut(s) 112, 415
Sau3AI GATC 3 cut(s) 196, 269, 541
ScrFI CCNGG 1 cut(s) 303
SetI ASST 7 cut(s) 12, 215, 332, 347, 360, 410, 468
SfcI CTRYAG 2 cut(s) 265, 273
SfuI TTCGAA 2 cut(s) 56, 128
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
Sse9I AATT 3 cut(s) 138, 236, 241
SspMI CTAG 2 cut(s) 371, 500
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 118, 590
TaqI TCGA 2 cut(s) 56, 128
TasI AATT 3 cut(s) 138, 236, 241
TfiI GAWTC 1 cut(s) 125
TscAI CASTG 1 cut(s) 356
TseFI GTSAC 1 cut(s) 87
TseI GCWGC 2 cut(s) 111, 414
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 3 cut(s) 98, 302, 526
TspRI CASTG 1 cut(s) 356
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 489
XspI CTAG 2 cut(s) 371, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.