Rh7AG170500

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000959
Physical Location & Seq
Forward (+)
14744040 .. 14744633
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG170500.1

Sequence Viewer

Length: 594 bp
ATGCAAGGAAATGGATGCACAGCTTTCGACGAAAATGGTGAGATCGTTTATCGCCTGGATAACTACGACGACAAGCACAGCAATGAAGTGTTCCTCATGGATCTCCACGGCAAGGTTCTCTTCACTCTATGTGAGCATAGAGTGGGAATGCTTTCGCGTTGGAAGGACTACGCAACCAACGGGGCTAAGCCAATGTTTCGAGTGAGAAAGAGTTGCAGACCATTCCTCGGAAACAAAGATTCTAGTAACTCGTACAAAGTAAGCATGAGATCCAACGGAAGTTGCTACAGGTTACAAGGTTTGGCGGCTGGAAAATCAGCAGCTTTCAGATTAACTGACAGTAACGGAAGAGTTGTGGCGGAGGCAAAGCAAAAGCAATCATCTTCAGGTGTTGTGTTGGGAGATGATATTTTGAGTTTGATGGTGGAGTCTGATGTAGATCATTCTTTCATCATGGCTCTTGTCACTGTTTATGGCTTAATCAAGCGTCAAATAAGAAACTCAGCTAGAGGCCTAGAGCCGTCTCAGATTGTACCTATGGGAAATAGTAGTACAGTGGTGCAGACCAAAATCAATTTCTTTTTACCGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

197

Amino Acids

21.87

Weight (kDa)

9.21

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 2 - 158 1.2e-25 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 589
AccII CGCG 1 cut(s) 157
AciI CCGC 3 cut(s) 305, 359, 587
AclWI GGATC 2 cut(s) 108, 264
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 3 cut(s) 254, 534, 553
AfiI CCNNNNNNNGG 2 cut(s) 112, 227
AjnI CCWGG 1 cut(s) 54
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AluBI AGCT 3 cut(s) 23, 323, 506
AluI AGCT 3 cut(s) 23, 323, 506
Alw26I GTCTC 1 cut(s) 528
AlwI GGATC 2 cut(s) 108, 264
AoxI GGCC 1 cut(s) 511
ApeKI GCWGC 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 50
BbvI GCAGC 1 cut(s) 332
BccI CCATC 1 cut(s) 415
BceAI ACGGC 2 cut(s) 124, 505
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BciT130I CCWGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 528
BfaI CTAG 4 cut(s) 243, 507, 515, 592
BfmI CTRYAG 1 cut(s) 286
BisI GCNGC 2 cut(s) 306, 321
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 2 cut(s) 307, 322
Bme1390I CCNGG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 5
Bpu1102I GCTNAGC 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 106, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 227
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 106, 226
BseGI GGATG 1 cut(s) 20
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 112, 227
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 516, 539
BseXI GCAGC 1 cut(s) 332
BsgI GTGCAG 1 cut(s) 581
Bsh1236I CGCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 513
BslI CCNNNNNNNGG 2 cut(s) 112, 227
BsmAI GTCTC 1 cut(s) 528
BsmBI CGTCTC 1 cut(s) 528
BsmI GAATGC 1 cut(s) 153
BsnI GGCC 1 cut(s) 513
Bsp143I GATC 4 cut(s) 42, 100, 269, 439
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 3 cut(s) 305, 359, 587
BspANI GGCC 1 cut(s) 513
BspCNI CTCAG 2 cut(s) 515, 538
BspFNI CGCG 1 cut(s) 157
BspPI GGATC 2 cut(s) 108, 264
BsrBI CCGCTC 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 106, 226
BssMI GATC 4 cut(s) 42, 100, 269, 439
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 3 cut(s) 341, 469, 556
Bst6I CTCTTC 2 cut(s) 125, 343
BstDEI CTNAG 3 cut(s) 186, 502, 525
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 20
BstFNI CGCG 1 cut(s) 157
BstKTI GATC 4 cut(s) 45, 103, 272, 442
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 4 cut(s) 42, 100, 269, 439
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 286
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 332
BstX2I RGATCY 2 cut(s) 100, 269
BstYI RGATCY 2 cut(s) 100, 269
BsuRI GGCC 1 cut(s) 513
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 465, 561
CseI GACGC 1 cut(s) 476
Csp6I GTAC 3 cut(s) 253, 533, 552
CviAII CATG 3 cut(s) 97, 265, 454
CviQI GTAC 3 cut(s) 253, 533, 552
DdeI CTNAG 3 cut(s) 186, 502, 525
DpnI GATC 4 cut(s) 44, 102, 271, 441
DpnII GATC 4 cut(s) 42, 100, 269, 439
Eam1104I CTCTTC 2 cut(s) 125, 343
EarI CTCTTC 2 cut(s) 125, 343
EciI GGCGGA 1 cut(s) 374
Eco147I AGGCCT 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 528
FaeI CATG 3 cut(s) 100, 268, 457
FaiI YATR 7 cut(s) 98, 130, 138, 266, 455, 474, 539
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 3 cut(s) 96, 264, 453
Fnu4HI GCNGC 2 cut(s) 306, 321
FokI GGATG 1 cut(s) 27
Fsp4HI GCNGC 2 cut(s) 306, 321
FspBI CTAG 4 cut(s) 243, 507, 515, 592
GluI GCNGC 2 cut(s) 306, 321
HaeIII GGCC 1 cut(s) 513
HgaI GACGC 1 cut(s) 476
Hin1II CATG 3 cut(s) 100, 268, 457
HinfI GANTC 2 cut(s) 239, 428
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 4 cut(s) 230, 329, 433, 528
Hpy99I CGWCG 2 cut(s) 32, 71
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 3 cut(s) 341, 469, 556
HpyCH4V TGCA 4 cut(s) 4, 18, 216, 562
HpyF3I CTNAG 3 cut(s) 186, 502, 525
Hsp92II CATG 3 cut(s) 100, 268, 457
Kzo9I GATC 4 cut(s) 42, 100, 269, 439
LpnPI CCDG 5 cut(s) 41, 68, 274, 294, 372
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 1 cut(s) 5
MaeI CTAG 4 cut(s) 243, 507, 515, 592
MaeIII GTNAC 4 cut(s) 245, 291, 341, 463
MalI GATC 4 cut(s) 44, 102, 271, 441
MbiI CCGCTC 1 cut(s) 589
MboI GATC 4 cut(s) 42, 100, 269, 439
MboII GAAGA 3 cut(s) 112, 360, 375
MflI RGATCY 2 cut(s) 100, 269
MluCI AATT 1 cut(s) 574
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 2 cut(s) 140, 297
MnlI CCTC 4 cut(s) 104, 236, 355, 503
MroXI GAANNNNTTC 1 cut(s) 151
MseI TTAA 2 cut(s) 332, 479
MslI CAYNNNNRTG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 153
MvaI CCWGG 1 cut(s) 56
MvnI CGCG 1 cut(s) 157
NdeII GATC 4 cut(s) 42, 100, 269, 439
NlaIII CATG 3 cut(s) 100, 268, 457
NmuCI GTSAC 1 cut(s) 463
PceI AGGCCT 1 cut(s) 513
PctI GAATGC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 307, 322
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PsuI RGATCY 2 cut(s) 100, 269
RsaI GTAC 3 cut(s) 254, 534, 553
RsaNI GTAC 3 cut(s) 253, 533, 552
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 332, 479
SatI GCNGC 2 cut(s) 306, 321
Sau3AI GATC 4 cut(s) 42, 100, 269, 439
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 1 cut(s) 56
SetI ASST 8 cut(s) 25, 117, 293, 301, 325, 391, 508, 538
SfaNI GCATC 1 cut(s) 5
SfcI CTRYAG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 81
Sse9I AATT 1 cut(s) 574
SseBI AGGCCT 1 cut(s) 513
SsiI CCGC 3 cut(s) 305, 359, 587
SspMI CTAG 4 cut(s) 243, 507, 515, 592
StuI AGGCCT 1 cut(s) 513
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 3 cut(s) 341, 469, 556
TaqI TCGA 2 cut(s) 27, 199
TasI AATT 1 cut(s) 574
TatI WGTACW 1 cut(s) 551
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 2 cut(s) 332, 479
Tru9I TTAA 2 cut(s) 332, 479
TscAI CASTG 2 cut(s) 472, 561
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 2 cut(s) 99, 439
TspGWI ACGGA 2 cut(s) 291, 360
TspRI CASTG 2 cut(s) 472, 561
XmnI GAANNNNTTC 1 cut(s) 151
XspI CTAG 4 cut(s) 243, 507, 515, 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.