Rorug07G0046900

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000959
Physical Location & Seq
Reverse (-)
3406575 .. 3408153
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0046900.1

Sequence Viewer

Length: 582 bp
ATGCATGAACCCAGGACACGTGAAATCGATCTGAAGCGCTTACAAGTGAAATTTCTTAAAGAGGAAAAGATATTATTTCAAGATAAGAAACAGAAATGGGTAGAAGAATACTTGAATCAGCCTGGCTGCCACCAGGATGAGTTGAAAAAGAACTTGTTTGCGGAGACATCTAAATGGGAAGCACAATACGAGAAGGAGCACTTTGAGCCCTTCTACAGAAAGAGATATGAGATTGTTACTGGAGGAGGATATGAAAAACCATTTACAGAGGAGGGACTGGATATGTTTTGGGTTTATGCGTTGCTGGCAAATCAGATAGTTGTTAGGCAGGTGATTGGTGACAACTCGTCTGTGGTGTTGAAAGCAATTGGGACGGAAATTGAATGGTATGATAAGAAAAGCTTGACAGAGAAACTTCTTTTAGTAAGGTTGCACAAAAGGTTGCACAAAGGTTCGCATGTCGAAGTTATAGAGAAGTGTCGAAGCTTCTTCAACTTCTTTGAAACAAAAACTTATGAACAGGGTTTTATCTTTGATGAAGAAGCTGGTTCCGTTGAAATCCGAGGTGGGGTAGAGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

193

Amino Acids

22.96

Weight (kDa)

6.12

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 118 - 174 9.2e-08 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 319
Acc36I ACCTGC 1 cut(s) 319
AciI CCGC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 53
AcvI CACGTG 1 cut(s) 20
AfeI AGCGCT 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 568
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 8 cut(s) 80, 115, 145, 361, 383, 493, 503, 557
AhdI GACNNNNNGTC 1 cut(s) 346
AjnI CCWGG 3 cut(s) 11, 121, 132
AluBI AGCT 3 cut(s) 402, 486, 545
AluI AGCT 3 cut(s) 402, 486, 545
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 158
Aor51HI AGCGCT 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 50
AspLEI GCGC 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 343, 350
BanII GRGCYC 1 cut(s) 210
BbrPI CACGTG 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 113
BciT130I CCWGG 3 cut(s) 13, 123, 134
BcoDI GTCTC 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 214
BfoI RGCGCY 1 cut(s) 40
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 3 cut(s) 13, 123, 134
BmeRI GACNNNNNGTC 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 550
BmrFI CCNGG 3 cut(s) 13, 123, 134
BpmI CTGGAG 1 cut(s) 261
Bsa29I ATCGAT 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 11, 562
Bsc4I CCNNNNNNNGG 1 cut(s) 568
Bse1I ACTGG 2 cut(s) 244, 282
BseBI CCWGG 3 cut(s) 13, 123, 134
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 11, 562
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 568
BseNI ACTGG 2 cut(s) 244, 282
BseRI GAGGAG 2 cut(s) 258, 284
BseXI GCAGC 1 cut(s) 113
BshVI ATCGAT 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 201
BslFI GGGAC 2 cut(s) 288, 385
BslI CCNNNNNNNGG 1 cut(s) 568
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 288, 385
Bsp1286I GDGCHC 2 cut(s) 201, 210
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 161
BspDI ATCGAT 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 550
BspMI ACCTGC 1 cut(s) 319
BsrI ACTGG 2 cut(s) 244, 282
BssECI CCNNGG 2 cut(s) 11, 562
BssMI GATC 1 cut(s) 28
Bst2UI CCWGG 3 cut(s) 13, 123, 134
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 306
BstF5I GGATG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 205, 305
BstNI CCWGG 3 cut(s) 13, 123, 134
BstNSI RCATGY 1 cut(s) 461
BstSCI CCNGG 3 cut(s) 11, 121, 132
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 113
Bsu15I ATCGAT 1 cut(s) 27
BsuTUI ATCGAT 1 cut(s) 27
BtsCI GGATG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 306
CfoI GCGC 1 cut(s) 39
ClaI ATCGAT 1 cut(s) 27
CviAII CATG 2 cut(s) 5, 458
CviJI RGCY 6 cut(s) 121, 126, 208, 402, 486, 545
CviKI_1 RGCY 6 cut(s) 121, 126, 208, 402, 486, 545
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
DriI GACNNNNNGTC 1 cut(s) 346
Eam1105I GACNNNNNGTC 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 210
Eco47III AGCGCT 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 53
Eco72I CACGTG 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 11, 121, 132
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 2 cut(s) 8, 461
FaiI YATR 9 cut(s) 6, 228, 252, 284, 297, 390, 459, 470, 516
FalI AAGNNNNNCTT 4 cut(s) 185, 217, 386, 418
FaqI GGGAC 2 cut(s) 288, 385
FatI CATG 2 cut(s) 4, 457
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 127
GlaI GCGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 127
GsuI CTGGAG 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 40
HhaI GCGC 1 cut(s) 39
Hin1II CATG 2 cut(s) 8, 461
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HindIII AAGCTT 2 cut(s) 400, 484
HinfI GANTC 1 cut(s) 115
HphI GGTGA 2 cut(s) 343, 350
Hpy188I TCNGA 3 cut(s) 33, 315, 563
Hpy188III TCNNGA 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 187, 220
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 4, 433, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 305
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 2 cut(s) 8, 461
HspAI GCGC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 1 cut(s) 113
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 2 cut(s) 235, 338
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 3 cut(s) 116, 481, 551
MfeI CAATTG 1 cut(s) 366
MhlI GDGCHC 2 cut(s) 201, 210
MluCI AATT 3 cut(s) 50, 366, 378
MnlI CCTC 7 cut(s) 55, 236, 239, 262, 265, 557, 568
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 2 cut(s) 135, 172
MspR9I CCNGG 3 cut(s) 13, 123, 134
MunI CAATTG 1 cut(s) 366
MvaI CCWGG 3 cut(s) 13, 123, 134
MwoI GCNNNNNNNGC 2 cut(s) 205, 305
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 8, 461
NlaIV GGNNCC 1 cut(s) 550
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 461
PaqCI CACCTGC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 128
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
Ppu21I YACGTR 1 cut(s) 20
Psp6I CCWGG 3 cut(s) 11, 121, 132
PspCI CACGTG 1 cut(s) 20
PspGI CCWGG 3 cut(s) 11, 121, 132
PspN4I GGNNCC 1 cut(s) 550
RseI CAYNNNNRTG 2 cut(s) 135, 172
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 1 cut(s) 28
ScrFI CCNGG 3 cut(s) 13, 123, 134
SduI GDGCHC 2 cut(s) 201, 210
SetI ASST 9 cut(s) 22, 333, 404, 431, 443, 454, 488, 547, 568
SfcI CTRYAG 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 135, 172
Sse9I AATT 3 cut(s) 50, 366, 378
SsiI CCGC 1 cut(s) 161
StyD4I CCNGG 3 cut(s) 11, 121, 132
TaiI ACGT 1 cut(s) 22
TaqI TCGA 3 cut(s) 27, 462, 481
TasI AATT 3 cut(s) 50, 366, 378
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 4 cut(s) 21, 267, 531, 552
TspGWI ACGGA 2 cut(s) 389, 541
XapI RAATTY 1 cut(s) 50
XceI RCATGY 1 cut(s) 461
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.