Rmu_sc0000308.1_g000037

LURP-one-related 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000308.1
OG0000959
Physical Location & Seq
Reverse (-)
157936 .. 159521
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000308.1_g000037.1.cds

Sequence Viewer

Length: 1104 bp
atggcaaaggttcatccccaagcaccactttcttcttcatcccctggctacttcacttcaaaacaagaaacattcactatatggatgaagtctctcatattgaatggccatggttgcactgtttttgattctaacggtcagatcgtgtatcgtgtagataattacgactctagaggtagagctaaagttcatcttatggatttgaaaggccaaattctattcaccatactaagaaagaaatccaaatttcttggtgtctgggagggatacagatccagtaatggtaaagagatcaacctgaaaaatacacccaggtttcaagttaggagaagctttaaaggcaagtcagcatgtaaagtcatcgtgggactagacaagaatcaaatacagcaatacagaatagagagctggagtaaaggaaagtcagcctgcaagatactagacaagtttggaagacttgttgcagaggtaaagagaaagcagtcaacatgtggagtggtactaggagaagatgttttgacactggtggtagagcccttcatggatcactctcttatagtagggcttcttgttgtgtatggattggatcggaagttgtctggtttcgtccctattggcctaaggaacgggttgcgttgtggaagtgggaaggaatcggagaaggaaagggggtttgctggggtcggagcggcgtctgttggtggacgttcgttggcctgccgacgtcaatggtcggatcgacggtcgattgagggctggtttggacgatcgatccggatcctgttgcagactttccagatgccggtgtttgttgggcggactaggacgctcgacggcgttcgccgatggtgggacgactacggaggcgcgacggtggcccgacttcggtggtggggtggccgtctgtatggtggggcgacacagttggtgacttgggccgggcgggttggatgcatggccggtttggtcctttgggcttggatgcagctggtaggcccgatatgggctggagatggggtttgggctcactttgtggacccaacccaagttgttatattgttatattttagttactctcatgcttccttgctttgggaatcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

367

Amino Acids

41.18

Weight (kDa)

10.09

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 727
AccBSI CCGCTC 1 cut(s) 689
AccII CGCG 1 cut(s) 869
AccIII TCCGGA 1 cut(s) 774
AciI CCGC 3 cut(s) 689, 817, 943
AclWI GGATC 7 cut(s) 267, 552, 594, 744, 766, 772, 785
AcoI YGGCCR 3 cut(s) 106, 898, 957
AcsI RAATTY 2 cut(s) 213, 245
AcyI GRCGYC 2 cut(s) 692, 724
AdeI CACNNNGTG 1 cut(s) 1033
AfaI GTAC 1 cut(s) 501
AfiI CCNNNNNNNGG 5 cut(s) 802, 850, 885, 1003, 1092
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 4 cut(s) 60, 103, 205, 320
AjnI CCWGG 2 cut(s) 43, 311
AluBI AGCT 4 cut(s) 182, 333, 408, 988
AluI AGCT 4 cut(s) 182, 333, 408, 988
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 7 cut(s) 267, 552, 594, 744, 766, 772, 785
Aor13HI TCCGGA 1 cut(s) 774
AoxI GGCC 9 cut(s) 106, 208, 616, 714, 876, 898, 936, 957, 994
ApeKI GCWGC 1 cut(s) 985
ApoI RAATTY 2 cut(s) 213, 245
AspLEI GCGC 1 cut(s) 869
AspS9I GGNCC 5 cut(s) 877, 936, 967, 995, 1036
AsuC2I CCSGG 1 cut(s) 940
AsuHPI GGTGA 2 cut(s) 214, 940
AvaII GGWCC 2 cut(s) 967, 1036
AxyI CCTNAGG 1 cut(s) 620
BalI TGGCCA 1 cut(s) 108
BamHI GGATCC 1 cut(s) 777
BanII GRGCYC 2 cut(s) 537, 1027
BbsI GAAGAC 1 cut(s) 460
BbvI GCAGC 1 cut(s) 997
BccI CCATC 2 cut(s) 840, 1007
BceAI ACGGC 2 cut(s) 850, 885
BciT130I CCWGG 2 cut(s) 45, 313
BciVI GTATCC 1 cut(s) 260
BcnI CCSGG 1 cut(s) 940
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 6 cut(s) 171, 371, 440, 503, 822, 1102
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 2 cut(s) 690, 986
BlsI GCNGC 2 cut(s) 691, 987
Bme1390I CCNGG 3 cut(s) 45, 313, 940
Bme18I GGWCC 2 cut(s) 967, 1036
BmgT120I GGNCC 5 cut(s) 877, 936, 967, 995, 1036
BmiI GGNNCC 2 cut(s) 779, 1038
BmrFI CCNGG 3 cut(s) 45, 313, 940
BmsI GCATC 3 cut(s) 789, 941, 972
BpiI GAAGAC 1 cut(s) 460
BpmI CTGGAG 2 cut(s) 430, 1029
BpuMI CCSGG 1 cut(s) 940
Bsa29I ATCGAT 1 cut(s) 770
BsaBI GATNNNNATC 2 cut(s) 271, 776
BsaHI GRCGYC 2 cut(s) 692, 724
BsaJI CCNNGG 3 cut(s) 43, 109, 311
BsaWI WCCGGW 1 cut(s) 774
BsaXI ACNNNNNCTCC 4 cut(s) 498, 528, 1002, 1032
Bsc4I CCNNNNNNNGG 5 cut(s) 802, 850, 885, 1003, 1092
Bse118I RCCGGY 2 cut(s) 802, 959
Bse1I ACTGG 2 cut(s) 276, 528
Bse21I CCTNAGG 1 cut(s) 620
Bse8I GATNNNNATC 2 cut(s) 271, 776
BseAI TCCGGA 1 cut(s) 774
BseBI CCWGG 2 cut(s) 45, 313
BseCI ATCGAT 1 cut(s) 770
BseDI CCNNGG 3 cut(s) 43, 109, 311
BseGI GGATG 5 cut(s) 13, 38, 90, 956, 987
BseJI GATNNNNATC 2 cut(s) 271, 776
BseLI CCNNNNNNNGG 5 cut(s) 802, 850, 885, 1003, 1092
BseNI ACTGG 2 cut(s) 276, 528
BseXI GCAGC 1 cut(s) 997
BseYI CCCAGC 1 cut(s) 677
Bsh1236I CGCG 1 cut(s) 869
Bsh1285I CGRYCG 2 cut(s) 746, 770
BshFI GGCC 9 cut(s) 108, 210, 618, 716, 878, 900, 938, 959, 996
BshVI ATCGAT 1 cut(s) 770
BsiEI CGRYCG 2 cut(s) 746, 770
BsiSI CCGG 4 cut(s) 775, 803, 939, 960
BslFI GGGAC 3 cut(s) 381, 593, 866
BslI CCNNNNNNNGG 5 cut(s) 802, 850, 885, 1003, 1092
BsmAI GTCTC 1 cut(s) 96
BsmFI GGGAC 3 cut(s) 381, 593, 866
BsnI GGCC 9 cut(s) 108, 210, 618, 716, 878, 900, 938, 959, 996
Bsp1286I GDGCHC 2 cut(s) 537, 1027
Bsp13I TCCGGA 1 cut(s) 774
Bsp143I GATC 9 cut(s) 141, 272, 291, 544, 586, 736, 767, 771, 777
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 3 cut(s) 689, 817, 943
BspANI GGCC 9 cut(s) 108, 210, 618, 716, 878, 900, 938, 959, 996
BspDI ATCGAT 1 cut(s) 770
BspEI TCCGGA 1 cut(s) 774
BspFNI CGCG 1 cut(s) 869
BspLI GGNNCC 2 cut(s) 779, 1038
BspPI GGATC 7 cut(s) 267, 552, 594, 744, 766, 772, 785
BsrBI CCGCTC 1 cut(s) 689
BsrFI RCCGGY 2 cut(s) 802, 959
BsrI ACTGG 2 cut(s) 276, 528
BssAI RCCGGY 2 cut(s) 802, 959
BssECI CCNNGG 3 cut(s) 43, 109, 311
BssMI GATC 9 cut(s) 141, 272, 291, 544, 586, 736, 767, 771, 777
BssNI GRCGYC 2 cut(s) 692, 724
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 45, 313
Bst4CI ACNGT 5 cut(s) 121, 137, 744, 874, 924
BstACI GRCGYC 2 cut(s) 692, 724
BstC8I GCNNGC 2 cut(s) 430, 718
BstDEI CTNAG 2 cut(s) 230, 620
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 5 cut(s) 13, 38, 90, 956, 987
BstFNI CGCG 1 cut(s) 869
BstHHI GCGC 1 cut(s) 869
BstKTI GATC 9 cut(s) 144, 275, 294, 547, 589, 739, 770, 774, 780
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 9 cut(s) 141, 272, 291, 544, 586, 736, 767, 771, 777
BstMCI CGRYCG 2 cut(s) 746, 770
BstMWI GCNNNNNNNGC 3 cut(s) 114, 339, 875
BstNI CCWGG 2 cut(s) 45, 313
BstNSI RCATGY 2 cut(s) 354, 492
BstSCI CCNGG 3 cut(s) 43, 311, 938
BstUI CGCG 1 cut(s) 869
BstV1I GCAGC 1 cut(s) 997
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 2 cut(s) 272, 777
BstYI RGATCY 2 cut(s) 272, 777
Bsu15I ATCGAT 1 cut(s) 770
Bsu36I CCTNAGG 1 cut(s) 620
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 9 cut(s) 108, 210, 618, 716, 878, 900, 938, 959, 996
BsuTUI ATCGAT 1 cut(s) 770
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 5 cut(s) 13, 38, 90, 956, 987
BtsIMutI CAGTG 2 cut(s) 117, 521
Cac8I GCNNGC 2 cut(s) 430, 718
CfoI GCGC 1 cut(s) 869
Cfr10I RCCGGY 2 cut(s) 802, 959
Cfr13I GGNCC 5 cut(s) 877, 936, 967, 995, 1036
ClaI ATCGAT 1 cut(s) 770
CseI GACGC 2 cut(s) 681, 835
Csp6I GTAC 1 cut(s) 500
CviAII CATG 6 cut(s) 110, 351, 489, 541, 955, 1079
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 2 cut(s) 230, 620
DpnI GATC 9 cut(s) 143, 274, 293, 546, 588, 738, 769, 773, 779
DpnII GATC 9 cut(s) 141, 272, 291, 544, 586, 736, 767, 771, 777
DraI TTTAAA 1 cut(s) 337
DraIII CACNNNGTG 1 cut(s) 1033
EaeI YGGCCR 3 cut(s) 106, 898, 957
EciI GGCGGA 1 cut(s) 832
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 2 cut(s) 537, 1027
Eco47I GGWCC 2 cut(s) 967, 1036
Eco81I CCTNAGG 1 cut(s) 620
EcoRII CCWGG 2 cut(s) 43, 311
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 956
EcoT38I GRGCYC 2 cut(s) 537, 1027
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 6 cut(s) 113, 354, 492, 544, 958, 1082
FalI AAGNNNNNCTT 4 cut(s) 12, 44, 177, 209
FaqI GGGAC 3 cut(s) 381, 593, 866
FatI CATG 6 cut(s) 109, 350, 488, 540, 954, 1078
FauI CCCGC 1 cut(s) 936
Fnu4HI GCNGC 2 cut(s) 690, 986
FokI GGATG 4 cut(s) 25, 97, 963, 994
FriOI GRGCYC 2 cut(s) 537, 1027
Fsp4HI GCNGC 2 cut(s) 690, 986
FspBI CTAG 6 cut(s) 171, 371, 440, 503, 822, 1102
GlaI GCGC 1 cut(s) 868
GluI GCNGC 2 cut(s) 690, 986
GsaI CCCAGC 1 cut(s) 681
GsuI CTGGAG 2 cut(s) 430, 1029
HaeIII GGCC 9 cut(s) 108, 210, 618, 716, 878, 900, 938, 959, 996
HapII CCGG 4 cut(s) 775, 803, 939, 960
HgaI GACGC 2 cut(s) 681, 835
HhaI GCGC 1 cut(s) 869
Hin1I GRCGYC 2 cut(s) 692, 724
Hin1II CATG 6 cut(s) 113, 354, 492, 544, 958, 1082
Hin6I GCGC 1 cut(s) 867
HinP1I GCGC 1 cut(s) 867
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 5 cut(s) 128, 167, 379, 653, 1097
HpaII CCGG 4 cut(s) 775, 803, 939, 960
HphI GGTGA 2 cut(s) 214, 940
Hpy166II GTNNAC 3 cut(s) 486, 704, 1036
Hpy188I TCNGA 5 cut(s) 141, 591, 658, 686, 736
Hpy188III TCNNGA 3 cut(s) 171, 775, 796
Hpy8I GTNNAC 3 cut(s) 486, 704, 1036
Hpy99I CGWCG 4 cut(s) 726, 744, 836, 874
HpyAV CCTTC 3 cut(s) 547, 643, 655
HpyCH4III ACNGT 5 cut(s) 121, 137, 744, 874, 924
HpyCH4IV ACGT 2 cut(s) 706, 724
HpyCH4V TGCA 6 cut(s) 117, 432, 464, 787, 954, 985
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 339, 875
HpyF3I CTNAG 2 cut(s) 230, 620
HpySE526I ACGT 2 cut(s) 706, 724
Hsp92I GRCGYC 2 cut(s) 692, 724
Hsp92II CATG 6 cut(s) 113, 354, 492, 544, 958, 1082
HspAI GCGC 1 cut(s) 867
Kpn2I TCCGGA 1 cut(s) 774
Kzo9I GATC 9 cut(s) 141, 272, 291, 544, 586, 736, 767, 771, 777
LmnI GCTCC 1 cut(s) 686
Lsp1109I GCAGC 1 cut(s) 997
LweI GCATC 3 cut(s) 789, 941, 972
MaeI CTAG 6 cut(s) 171, 371, 440, 503, 822, 1102
MaeII ACGT 2 cut(s) 706, 724
MaeIII GTNAC 2 cut(s) 928, 1070
MalI GATC 9 cut(s) 143, 274, 293, 546, 588, 738, 769, 773, 779
MbiI CCGCTC 1 cut(s) 689
MboI GATC 9 cut(s) 141, 272, 291, 544, 586, 736, 767, 771, 777
MboII GAAGA 4 cut(s) 24, 27, 465, 521
MflI RGATCY 2 cut(s) 272, 777
MhlI GDGCHC 2 cut(s) 537, 1027
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 3 cut(s) 160, 213, 245
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 3 cut(s) 664, 714, 928
MnlI CCTC 5 cut(s) 167, 256, 460, 745, 857
Mox20I TGGCCA 1 cut(s) 108
Mph1103I ATGCAT 1 cut(s) 956
MroI TCCGGA 1 cut(s) 774
MscI TGGCCA 1 cut(s) 108
MseI TTAA 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 988
MspI CCGG 4 cut(s) 775, 803, 939, 960
MspR9I CCNGG 3 cut(s) 45, 313, 940
MvaI CCWGG 2 cut(s) 45, 313
MvnI CGCG 1 cut(s) 869
MwoI GCNNNNNNNGC 3 cut(s) 114, 339, 875
NciI CCSGG 1 cut(s) 940
NcoI CCATGG 1 cut(s) 109
NdeII GATC 9 cut(s) 141, 272, 291, 544, 586, 736, 767, 771, 777
NlaIII CATG 6 cut(s) 113, 354, 492, 544, 958, 1082
NlaIV GGNNCC 2 cut(s) 779, 1038
NmuCI GTSAC 1 cut(s) 928
NsiI ATGCAT 1 cut(s) 956
NspI RCATGY 2 cut(s) 354, 492
PciI ACATGT 1 cut(s) 488
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 4 cut(s) 128, 379, 653, 1097
PkrI GCNGC 2 cut(s) 691, 987
Ple19I CGATCG 1 cut(s) 770
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PscI ACATGT 1 cut(s) 488
Psp6I CCWGG 2 cut(s) 43, 311
PspFI CCCAGC 1 cut(s) 677
PspGI CCWGG 2 cut(s) 43, 311
PspN4I GGNNCC 2 cut(s) 779, 1038
PspPI GGNCC 5 cut(s) 877, 936, 967, 995, 1036
PsuI RGATCY 2 cut(s) 272, 777
PvuI CGATCG 1 cut(s) 770
PvuII CAGCTG 1 cut(s) 988
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 690, 986
Sau3AI GATC 9 cut(s) 141, 272, 291, 544, 586, 736, 767, 771, 777
Sau96I GGNCC 5 cut(s) 877, 936, 967, 995, 1036
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 3 cut(s) 45, 313, 940
SduI GDGCHC 2 cut(s) 537, 1027
SfaNI GCATC 3 cut(s) 789, 941, 972
SinI GGWCC 2 cut(s) 967, 1036
Sse9I AATT 3 cut(s) 160, 213, 245
SsiI CCGC 3 cut(s) 689, 817, 943
SspMI CTAG 6 cut(s) 171, 371, 440, 503, 822, 1102
StyD4I CCNGG 3 cut(s) 43, 311, 938
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 5 cut(s) 121, 137, 744, 874, 924
TaiI ACGT 2 cut(s) 709, 727
TaqI TCGA 4 cut(s) 739, 746, 770, 831
TasI AATT 3 cut(s) 160, 213, 245
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 4 cut(s) 128, 379, 653, 1097
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 2 cut(s) 124, 528
TseFI GTSAC 1 cut(s) 928
TseI GCWGC 1 cut(s) 985
Tsp45I GTSAC 1 cut(s) 928
TspDTI ATGAA 4 cut(s) 27, 101, 179, 529
TspGWI ACGGA 1 cut(s) 876
TspRI CASTG 2 cut(s) 124, 528
VpaK11BI GGWCC 2 cut(s) 967, 1036
XapI RAATTY 2 cut(s) 213, 245
XbaI TCTAGA 1 cut(s) 170
XceI RCATGY 2 cut(s) 354, 492
XspI CTAG 6 cut(s) 171, 371, 440, 503, 822, 1102
ZraI GACGTC 1 cut(s) 725
Zsp2I ATGCAT 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.