AT3G14260

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000959
Physical Location & Seq
Reverse (-)
4747769 .. 4748859
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14260.1

Sequence Viewer

Length: 693 bp
ATGCAAATATACCGACGACCTTTTGAGACAAAAACTTGGCAATATCGAATCTGTCCAGCAGAGACTATGGTGAAGATTCATCCCGATCTAACAACCTCCGGCGCCGGAGAAGAAACAAGTTCACCGTACTTGACGACGGAGCAAGAGAGTTTCACTATATGGATGAAGTCGTTGGTGTTCAACACAAATGGCTGCACCGTCTTCGATTCCAAAGGAAACATAATTTATCGTGTCGACAATTATAATTCTAAGAGCTGTCGTGAAGTTTATCTCATGGATTTGTCCGGTCATGTCTTGTTTACCTTACGTAGACAGAAATTTGGATTATTCAAGACATGGGAAGGATATAGATCATCATCAGCAACAGTTGAATCAACAACAAAACTAGAATATTTTCGAGTGAAAAATAATGTTTTTCAAGTTCCAAATAAAGATTCATCATCTTCGTATAGAGTCAACGCGGGATCATGTAGAAACGATGAACAATATTGTTATAAGATGGTAACTCGCGGATCAAGTCTAGCGATTGAGGATAATTGTGGAAAACTATTGGCAGAAGTGAAGAGAAAACAATCGATAAACGGTTTGAAGTTGGGAGATGATGTTTTGACGATGATGGTGGAGTCACAAGTTGATCACTCTTTCATCATTGGACTTGTTTTAGCTCATAGTCTTATCAATTGTATACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

230

Amino Acids

26.28

Weight (kDa)

8.61

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 50 - 222 1.9e-29 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 243, 495
AccB1I GGYRCC 1 cut(s) 101
AccI GTMKAC 3 cut(s) 234, 310, 685
AccII CGCG 2 cut(s) 461, 510
AciI CCGC 2 cut(s) 461, 510
AclWI GGATC 2 cut(s) 472, 520
AcsI RAATTY 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 128
AgsI TTSAA 5 cut(s) 181, 331, 371, 419, 589
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AluBI AGCT 2 cut(s) 255, 665
AluI AGCT 2 cut(s) 255, 665
Alw26I GTCTC 2 cut(s) 20, 56
AlwI GGATC 2 cut(s) 472, 520
ApeKI GCWGC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 82, 114
BanI GGYRCC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 179
BccI CCATC 2 cut(s) 493, 610
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BclI TGATCA 1 cut(s) 634
BcoDI GTCTC 2 cut(s) 20, 56
BfaI CTAG 2 cut(s) 386, 521
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 193
Bsa29I ATCGAT 1 cut(s) 575
BsaAI YACGTR 1 cut(s) 308
BsaBI GATNNNNATC 2 cut(s) 349, 355
BsaHI GRCGYC 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bse8I GATNNNNATC 2 cut(s) 349, 355
BseCI ATCGAT 1 cut(s) 575
BseGI GGATG 2 cut(s) 79, 168
BseJI GATNNNNATC 2 cut(s) 349, 355
BseXI GCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 178
Bsh1236I CGCG 2 cut(s) 461, 510
BshNI GGYRCC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 575
BsiSI CCGG 3 cut(s) 99, 105, 285
BsmAI GTCTC 2 cut(s) 20, 56
Bsp143I GATC 5 cut(s) 85, 350, 464, 512, 634
BspACI CCGC 2 cut(s) 461, 510
BspDI ATCGAT 1 cut(s) 575
BspFNI CGCG 2 cut(s) 461, 510
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 2 cut(s) 472, 520
BspT107I GGYRCC 1 cut(s) 101
BssMI GATC 5 cut(s) 85, 350, 464, 512, 634
BssNAI GTATAC 1 cut(s) 686
BssNI GRCGYC 1 cut(s) 102
Bst1107I GTATAC 1 cut(s) 686
Bst4CI ACNGT 5 cut(s) 126, 199, 367, 584, 690
Bst6I CTCTTC 1 cut(s) 557
BstACI GRCGYC 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 308
BstDEI CTNAG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 79, 168
BstFNI CGCG 2 cut(s) 461, 510
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 5 cut(s) 88, 353, 467, 515, 637
BstMAI GTCTC 2 cut(s) 20, 56
BstMBI GATC 5 cut(s) 85, 350, 464, 512, 634
BstSNI TACGTA 1 cut(s) 308
BstUI CGCG 2 cut(s) 461, 510
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 193
BstZ17I GTATAC 1 cut(s) 686
Bsu15I ATCGAT 1 cut(s) 575
BsuTUI ATCGAT 1 cut(s) 575
BtsCI GGATG 2 cut(s) 79, 168
CfoI GCGC 1 cut(s) 104
ClaI ATCGAT 1 cut(s) 575
Csp6I GTAC 1 cut(s) 127
CviAII CATG 4 cut(s) 274, 290, 336, 468
CviJI RGCY 3 cut(s) 192, 255, 665
CviKI_1 RGCY 3 cut(s) 192, 255, 665
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 249
DinI GGCGCC 1 cut(s) 103
DpnI GATC 5 cut(s) 87, 352, 466, 514, 636
DpnII GATC 5 cut(s) 85, 350, 464, 512, 634
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Eco105I TACGTA 1 cut(s) 308
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
FaeI CATG 4 cut(s) 277, 293, 339, 471
FatI CATG 4 cut(s) 273, 289, 335, 467
FauI CCCGC 1 cut(s) 454
FbaI TGATCA 1 cut(s) 634
FblI GTMKAC 3 cut(s) 234, 310, 685
Fnu4HI GCNGC 1 cut(s) 193
FokI GGATG 2 cut(s) 66, 175
Fsp4HI GCNGC 1 cut(s) 193
FspBI CTAG 2 cut(s) 386, 521
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 193
HaeII RGCGCY 1 cut(s) 105
HapII CCGG 3 cut(s) 99, 105, 285
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 4 cut(s) 277, 293, 339, 471
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 2 cut(s) 235, 457
HindII GTYRAC 2 cut(s) 235, 457
HinfI GANTC 7 cut(s) 48, 76, 206, 371, 434, 453, 623
HpaII CCGG 3 cut(s) 99, 105, 285
HphI GGTGA 2 cut(s) 82, 114
Hpy166II GTNNAC 6 cut(s) 122, 235, 300, 311, 457, 686
Hpy188III TCNNGA 3 cut(s) 83, 260, 331
Hpy8I GTNNAC 6 cut(s) 122, 235, 300, 311, 457, 686
Hpy99I CGWCG 2 cut(s) 18, 139
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 5 cut(s) 126, 199, 367, 584, 690
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 2 cut(s) 4, 195
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 1 cut(s) 307
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 4 cut(s) 277, 293, 339, 471
HspAI GCGC 1 cut(s) 102
KasI GGCGCC 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 5 cut(s) 85, 350, 464, 512, 634
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 4 cut(s) 69, 112, 118, 298
Lsp1109I GCAGC 1 cut(s) 179
MaeI CTAG 2 cut(s) 386, 521
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 2 cut(s) 502, 624
MalI GATC 5 cut(s) 87, 352, 466, 514, 636
MboI GATC 5 cut(s) 85, 350, 464, 512, 634
MboII GAAGA 5 cut(s) 85, 122, 193, 435, 574
MfeI CAATTG 1 cut(s) 679
MluCI AATT 6 cut(s) 222, 238, 244, 317, 535, 679
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 2 cut(s) 462, 632
MnlI CCTC 2 cut(s) 106, 523
MroXI GAANNNNTTC 1 cut(s) 393
MspI CCGG 3 cut(s) 99, 105, 285
MunI CAATTG 1 cut(s) 679
MvnI CGCG 2 cut(s) 461, 510
NarI GGCGCC 1 cut(s) 102
NdeII GATC 5 cut(s) 85, 350, 464, 512, 634
NlaIII CATG 4 cut(s) 277, 293, 339, 471
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 624
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 5 cut(s) 48, 76, 206, 371, 434
PkrI GCNGC 1 cut(s) 194
PleI GAGTC 2 cut(s) 461, 631
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 2 cut(s) 461, 631
Ppu21I YACGTR 1 cut(s) 308
PsiI TTATAA 2 cut(s) 243, 495
PspN4I GGNNCC 1 cut(s) 103
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SalI GTCGAC 1 cut(s) 233
SatI GCNGC 1 cut(s) 193
Sau3AI GATC 5 cut(s) 85, 350, 464, 512, 634
SchI GAGTC 2 cut(s) 462, 632
SetI ASST 6 cut(s) 22, 98, 257, 305, 310, 667
SfoI GGCGCC 1 cut(s) 103
SnaBI TACGTA 1 cut(s) 308
Sse9I AATT 6 cut(s) 222, 238, 244, 317, 535, 679
SsiI CCGC 2 cut(s) 461, 510
SspDI GGCGCC 1 cut(s) 101
SspI AATATT 2 cut(s) 392, 488
SspMI CTAG 2 cut(s) 386, 521
TaaI ACNGT 5 cut(s) 126, 199, 367, 584, 690
TaiI ACGT 1 cut(s) 310
TaqI TCGA 5 cut(s) 46, 204, 234, 397, 575
TasI AATT 6 cut(s) 222, 238, 244, 317, 535, 679
TfiI GAWTC 5 cut(s) 48, 76, 206, 371, 434
TseFI GTSAC 1 cut(s) 624
TseI GCWGC 1 cut(s) 192
Tsp45I GTSAC 1 cut(s) 624
TspDTI ATGAA 5 cut(s) 68, 179, 426, 495, 634
TspGWI ACGGA 1 cut(s) 152
XapI RAATTY 1 cut(s) 317
XmiI GTMKAC 3 cut(s) 234, 310, 685
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 2 cut(s) 386, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.