Prupe.5G096400_v2.0.a1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000959
Physical Location & Seq
Reverse (-)
10552759 .. 10553863
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G096400.1

Sequence Viewer

Length: 645 bp
ATGGCTAAGATTCATCCTCTCATAATACTCAACAGCAGCCATGAAGCTCCTTGTAGCTCTACTGCTAGTTCTTCATTGTGTTCTAACAAGTACATGACTTCAAAGAGAGAAACATTCACCATATGGATGAAATCGCTTGTGATGCAAGGAAACGGATGCACTGCGTTTGATGAAAGTGGAGAAATCGTTTATCGAATTGATAACTACGACAACAAGCACAGCGACGAAGTTTATCTCATGGATCTCCGGGGCAAGCTTCTCTTCACTGTTTGTGAGAAGAAAATGTGTGGTTTTCTAAGCTGGGAGGGCTACAAAAGCAACACTATTGTTGGTGCCAATAGGCCAATGTTTCGAGTGAGGAAAAGTTGTAGAGCAATTCTTGGAAATAACGAGTGTTTTTATAAAGTAAGCATGGGATCTGAGACCAGTTGCAGCTACAAGTTAGAAGCCTTGGGGGGGAAATCATCAGCATTTAGAATTACAGACAGCAATGGAGGATTTGTAGCAGAGGCAAAGAGAAAGCAGTCAAGTTCAGGAGTTGTATTGGGAGATGATGTGCTGAGTTTGGTGGTGGAGGCTCATGTAGATCACTCCCTTATCATGGCCCTTGTCACTGTTTATGGATTAATTAGACATCAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

215

Amino Acids

23.7

Weight (kDa)

8.58

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 332
AclWI GGATC 2 cut(s) 249, 424
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 456, 601
AgsI TTSAA 1 cut(s) 102
AluBI AGCT 5 cut(s) 47, 57, 256, 300, 435
AluI AGCT 5 cut(s) 47, 57, 256, 300, 435
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 2 cut(s) 249, 424
AoxI GGCC 2 cut(s) 341, 603
ApeKI GCWGC 2 cut(s) 36, 432
AseI ATTAAT 1 cut(s) 626
AspS9I GGNCC 1 cut(s) 604
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 109
BanI GGYRCC 1 cut(s) 332
BbvI GCAGC 2 cut(s) 48, 444
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 1 cut(s) 66
BisI GCNGC 2 cut(s) 37, 433
BlsI GCNGC 2 cut(s) 38, 434
Bme1390I CCNGG 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 604
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 2 cut(s) 132, 146
BpuMI CCSGG 1 cut(s) 248
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 247, 450
BsaXI ACNNNNNCTCC 6 cut(s) 171, 201, 486, 516, 540, 570
Bsc4I CCNNNNNNNGG 2 cut(s) 456, 601
Bse1I ACTGG 1 cut(s) 426
Bse3DI GCAATG 1 cut(s) 496
BseDI CCNNGG 2 cut(s) 247, 450
BseGI GGATG 3 cut(s) 13, 132, 161
BseLI CCNNNNNNNGG 2 cut(s) 456, 601
BseMI GCAATG 1 cut(s) 496
BseMII CTCAG 2 cut(s) 411, 551
BseNI ACTGG 1 cut(s) 426
BseXI GCAGC 2 cut(s) 48, 444
BseYI CCCAGC 1 cut(s) 300
BshFI GGCC 2 cut(s) 343, 605
BshNI GGYRCC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 456, 601
BsmAI GTCTC 1 cut(s) 416
BsnI GGCC 2 cut(s) 343, 605
Bso31I GGTCTC 1 cut(s) 416
Bsp143I GATC 3 cut(s) 241, 416, 586
BspANI GGCC 2 cut(s) 343, 605
BspCNI CTCAG 2 cut(s) 412, 552
BspLI GGNNCC 1 cut(s) 334
BspPI GGATC 2 cut(s) 249, 424
BspT107I GGYRCC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 496
BsrI ACTGG 1 cut(s) 426
BssECI CCNNGG 2 cut(s) 247, 450
BssMI GATC 3 cut(s) 241, 416, 586
BssT1I CCWWGG 1 cut(s) 450
Bst4CI ACNGT 2 cut(s) 268, 616
Bst6I CTCTTC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 4 cut(s) 6, 296, 420, 560
BstF5I GGATG 3 cut(s) 13, 132, 161
BstKTI GATC 3 cut(s) 244, 419, 589
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 3 cut(s) 241, 416, 586
BstMWI GCNNNNNNNGC 3 cut(s) 142, 306, 315
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 48, 444
BstX2I RGATCY 2 cut(s) 241, 416
BstYI RGATCY 2 cut(s) 241, 416
BsuRI GGCC 2 cut(s) 343, 605
BtsCI GGATG 3 cut(s) 13, 132, 161
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 3 cut(s) 159, 264, 612
Cac8I GCNNGC 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 604
Csp6I GTAC 1 cut(s) 91
CviAII CATG 6 cut(s) 41, 94, 238, 412, 581, 601
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 4 cut(s) 6, 296, 420, 560
DpnI GATC 3 cut(s) 243, 418, 588
DpnII GATC 3 cut(s) 241, 416, 586
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 450
Eco31I GGTCTC 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 6 cut(s) 44, 97, 241, 415, 584, 604
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 6 cut(s) 40, 93, 237, 411, 580, 600
FauNDI CATATG 1 cut(s) 122
Fnu4HI GCNGC 2 cut(s) 37, 433
FokI GGATG 2 cut(s) 139, 168
Fsp4HI GCNGC 2 cut(s) 37, 433
FspBI CTAG 1 cut(s) 66
GluI GCNGC 2 cut(s) 37, 433
GsaI CCCAGC 1 cut(s) 304
HaeIII GGCC 2 cut(s) 343, 605
HapII CCGG 1 cut(s) 247
Hin1II CATG 6 cut(s) 44, 97, 241, 415, 584, 604
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 247
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 421
Hpy188III TCNNGA 1 cut(s) 534
Hpy99I CGWCG 1 cut(s) 227
HpyCH4III ACNGT 2 cut(s) 268, 616
HpyCH4V TGCA 3 cut(s) 145, 159, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 306, 315
HpyF3I CTNAG 4 cut(s) 6, 296, 420, 560
Hsp92II CATG 6 cut(s) 44, 97, 241, 415, 584, 604
Kzo9I GATC 3 cut(s) 241, 416, 586
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 4 cut(s) 260, 286, 439, 519
Lsp1109I GCAGC 2 cut(s) 48, 444
LweI GCATC 2 cut(s) 132, 146
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 610
MalI GATC 3 cut(s) 243, 418, 588
MboI GATC 3 cut(s) 241, 416, 586
MboII GAAGA 3 cut(s) 63, 253, 289
MflI RGATCY 2 cut(s) 241, 416
MluCI AATT 5 cut(s) 195, 375, 477, 627, 638
MnlI CCTC 6 cut(s) 27, 298, 351, 488, 502, 568
MseI TTAA 1 cut(s) 626
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 1 cut(s) 248
MwoI GCNNNNNNNGC 3 cut(s) 142, 306, 315
NciI CCSGG 1 cut(s) 248
NdeI CATATG 1 cut(s) 122
NdeII GATC 3 cut(s) 241, 416, 586
NlaIII CATG 6 cut(s) 44, 97, 241, 415, 584, 604
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 610
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 2 cut(s) 38, 434
PshBI ATTAAT 1 cut(s) 626
PsiI TTATAA 1 cut(s) 402
PspFI CCCAGC 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 604
PsuI RGATCY 2 cut(s) 241, 416
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 626
SatI GCNGC 2 cut(s) 37, 433
Sau3AI GATC 3 cut(s) 241, 416, 586
Sau96I GGNCC 1 cut(s) 604
ScrFI CCNGG 1 cut(s) 248
SetI ASST 5 cut(s) 49, 59, 258, 302, 437
SfaNI GCATC 2 cut(s) 132, 146
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 5 cut(s) 195, 375, 477, 627, 638
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 2 cut(s) 268, 616
TaqI TCGA 2 cut(s) 193, 352
TasI AATT 5 cut(s) 195, 375, 477, 627, 638
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 626
Tru9I TTAA 1 cut(s) 626
TscAI CASTG 3 cut(s) 166, 271, 619
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 2 cut(s) 36, 432
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 4 cut(s) 57, 63, 143, 186
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 3 cut(s) 166, 271, 619
VspI ATTAAT 1 cut(s) 626
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.