MD17G1153800.v1.1

LURP-one-related 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000959
Physical Location & Seq
Reverse (-)
14502464 .. 14505592
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1153800.v1.1.491

Sequence Viewer

Length: 726 bp
ATGACAAAGGTTCACCCTGAGGCACCACTCTCCTCCTCCCTTGCCGAATACTGCACTTCGAAACAAGAAACATTCACCATGTGGATGAAGTCTCTCATACTGAATAGCAATGGCTGCACCGTCTTTGATTCTAACGGGAAAATTGTGTATCGCGTAGATAACTATGACTGCAAATGCAGAGGTGAAGTTTATCTTATGGATCTGAAAGGCAAAACCTTATTCACCATACGGAGAAAGAAATTCCATTTACCTGGGATTTGGGAGGGCTACAGATCCACAGGTAAAGAGATCAACCCAAAGAAGCCTGGATTTCAATTAAGAAAAAGCTCTAGGTTGTGTAGAGGAAGGTCACTATGTAAGGCTGTTGTAGGGCTAGACAAGAACCAACCACACCAATACAGAATAGAAAGCTTGAGCAGCAAGTCATCCTACAAGATACTTGACAAGTTTGGAAGACCAGTTGCAGAGGTAAAAAGGAAACAATCAACATGTGGAGTGGTTTTAGGAGAAGATGTTTTGACAGTGGTAGTAGAACCGCTCGTAGATCACAGTCTCATCACATGTGATTCTTCAAAAAGACGCTTATATGAGCAAAAACCATTTCTATGCTCAATAGAAACACTTTTGCATGTCACTAAGTATTTGTATCCCATTCCAAATGCGTTTCAAAACAAAAAATTGGTGGGTTTGCCAAAATTGAAAACCAAACCGAAATGTTCGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

242

Amino Acids

27.46

Weight (kDa)

9.68

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 24 - 187 1.1e-32 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccBSI CCGCTC 1 cut(s) 538
AccII CGCG 1 cut(s) 153
AciI CCGC 1 cut(s) 536
AclWI GGATC 2 cut(s) 207, 267
AcsI RAATTY 1 cut(s) 239
AdeI CACNNNGTG 1 cut(s) 81
AflIII ACRYGT 2 cut(s) 488, 560
AgsI TTSAA 4 cut(s) 314, 573, 668, 700
AjnI CCWGG 2 cut(s) 250, 304
AluBI AGCT 2 cut(s) 327, 411
AluI AGCT 2 cut(s) 327, 411
Alw26I GTCTC 2 cut(s) 96, 557
AlwI GGATC 2 cut(s) 207, 267
ApeKI GCWGC 2 cut(s) 114, 417
ApoI RAATTY 1 cut(s) 239
AsuHPI GGTGA 4 cut(s) 5, 67, 194, 214
AsuII TTCGAA 1 cut(s) 59
AxyI CCTNAGG 1 cut(s) 18
BanI GGYRCC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 460
BbvI GCAGC 2 cut(s) 101, 429
BciT130I CCWGG 2 cut(s) 252, 306
BciVI GTATCC 1 cut(s) 657
BcoDI GTCTC 2 cut(s) 96, 557
BfaI CTAG 2 cut(s) 330, 374
BfmI CTRYAG 1 cut(s) 268
BfuI GTATCC 1 cut(s) 657
BisI GCNGC 2 cut(s) 115, 418
BlsI GCNGC 2 cut(s) 116, 419
Bme1390I CCNGG 2 cut(s) 252, 306
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 2 cut(s) 252, 306
BpiI GAAGAC 1 cut(s) 460
Bpu14I TTCGAA 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bse1I ACTGG 1 cut(s) 458
Bse21I CCTNAGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 115
BseBI CCWGG 2 cut(s) 252, 306
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 2 cut(s) 90, 425
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 2 cut(s) 22, 25
BseXI GCAGC 2 cut(s) 101, 429
BsgI GTGCAG 2 cut(s) 37, 100
Bsh1236I CGCG 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 96, 557
Bsp119I TTCGAA 1 cut(s) 59
Bsp143I GATC 4 cut(s) 199, 272, 288, 544
BspACI CCGC 1 cut(s) 536
BspCNI CTCAG 1 cut(s) 10
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 2 cut(s) 207, 267
BspT104I TTCGAA 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 4 cut(s) 199, 272, 288, 544
Bst2UI CCWGG 2 cut(s) 252, 306
Bst4CI ACNGT 3 cut(s) 121, 523, 551
BstAPI GCANNNNNTGC 1 cut(s) 114
BstBI TTCGAA 1 cut(s) 59
BstDEI CTNAG 2 cut(s) 18, 636
BstF5I GGATG 2 cut(s) 90, 425
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 4 cut(s) 202, 275, 291, 547
BstMAI GTCTC 2 cut(s) 96, 557
BstMBI GATC 4 cut(s) 199, 272, 288, 544
BstMWI GCNNNNNNNGC 2 cut(s) 114, 417
BstNI CCWGG 2 cut(s) 252, 306
BstNSI RCATGY 3 cut(s) 492, 564, 632
BstSCI CCNGG 2 cut(s) 250, 304
BstSFI CTRYAG 1 cut(s) 268
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 101, 429
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 2 cut(s) 199, 272
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 2 cut(s) 199, 272
Bsu36I CCTNAGG 1 cut(s) 18
BsuI GTATCC 1 cut(s) 657
BtsCI GGATG 2 cut(s) 90, 425
BtsIMutI CAGTG 1 cut(s) 528
CseI GACGC 1 cut(s) 588
CviAII CATG 4 cut(s) 79, 489, 561, 629
CviJI RGCY 7 cut(s) 114, 267, 304, 327, 362, 373, 411
CviKI_1 RGCY 7 cut(s) 114, 267, 304, 327, 362, 373, 411
DdeI CTNAG 2 cut(s) 18, 636
DpnI GATC 4 cut(s) 201, 274, 290, 546
DpnII GATC 4 cut(s) 199, 272, 288, 544
DraIII CACNNNGTG 1 cut(s) 81
Eco81I CCTNAGG 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 250, 304
FaeI CATG 4 cut(s) 82, 492, 564, 632
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FatI CATG 4 cut(s) 78, 488, 560, 628
Fnu4HI GCNGC 2 cut(s) 115, 418
FokI GGATG 2 cut(s) 97, 412
Fsp4HI GCNGC 2 cut(s) 115, 418
FspBI CTAG 2 cut(s) 330, 374
GluI GCNGC 2 cut(s) 115, 418
HgaI GACGC 1 cut(s) 588
Hin1II CATG 4 cut(s) 82, 492, 564, 632
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 2 cut(s) 128, 566
HphI GGTGA 4 cut(s) 5, 67, 194, 214
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 204
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 3 cut(s) 121, 523, 551
HpyCH4V TGCA 6 cut(s) 54, 117, 171, 177, 464, 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 417
HpyF3I CTNAG 2 cut(s) 18, 636
Hsp92II CATG 4 cut(s) 82, 492, 564, 632
Kzo9I GATC 4 cut(s) 199, 272, 288, 544
LpnPI CCDG 7 cut(s) 30, 237, 264, 264, 291, 318, 471
Lsp1109I GCAGC 2 cut(s) 101, 429
MaeI CTAG 2 cut(s) 330, 374
MaeIII GTNAC 2 cut(s) 348, 631
MalI GATC 4 cut(s) 201, 274, 290, 546
MbiI CCGCTC 1 cut(s) 538
MboI GATC 4 cut(s) 199, 272, 288, 544
MboII GAAGA 3 cut(s) 465, 521, 561
MflI RGATCY 2 cut(s) 199, 272
MluCI AATT 5 cut(s) 141, 239, 314, 677, 695
MnlI CCTC 7 cut(s) 13, 43, 46, 173, 256, 335, 460
MseI TTAA 1 cut(s) 317
MslI CAYNNNNRTG 2 cut(s) 83, 604
MspR9I CCNGG 2 cut(s) 252, 306
MvaI CCWGG 2 cut(s) 252, 306
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 114, 417
NdeII GATC 4 cut(s) 199, 272, 288, 544
NlaIII CATG 4 cut(s) 82, 492, 564, 632
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 2 cut(s) 348, 631
NspI RCATGY 3 cut(s) 492, 564, 632
NspV TTCGAA 1 cut(s) 59
PciI ACATGT 2 cut(s) 488, 560
PfeI GAWTC 2 cut(s) 128, 566
PkrI GCNGC 2 cut(s) 116, 419
PscI ACATGT 2 cut(s) 488, 560
Psp6I CCWGG 2 cut(s) 250, 304
PspGI CCWGG 2 cut(s) 250, 304
PspN4I GGNNCC 1 cut(s) 24
PsuI RGATCY 2 cut(s) 199, 272
RseI CAYNNNNRTG 2 cut(s) 83, 604
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 2 cut(s) 115, 418
Sau3AI GATC 4 cut(s) 199, 272, 288, 544
ScrFI CCNGG 2 cut(s) 252, 306
SfcI CTRYAG 1 cut(s) 268
SfuI TTCGAA 1 cut(s) 59
SmiMI CAYNNNNRTG 2 cut(s) 83, 604
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 5 cut(s) 141, 239, 314, 677, 695
SsiI CCGC 1 cut(s) 536
SspMI CTAG 2 cut(s) 330, 374
StyD4I CCNGG 2 cut(s) 250, 304
TaaI ACNGT 3 cut(s) 121, 523, 551
TaqI TCGA 2 cut(s) 59, 719
TasI AATT 5 cut(s) 141, 239, 314, 677, 695
TfiI GAWTC 2 cut(s) 128, 566
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 1 cut(s) 528
TseFI GTSAC 2 cut(s) 348, 631
TseI GCWGC 2 cut(s) 114, 417
Tsp45I GTSAC 2 cut(s) 348, 631
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 1 cut(s) 528
XapI RAATTY 1 cut(s) 239
XceI RCATGY 3 cut(s) 492, 564, 632
XspI CTAG 2 cut(s) 330, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.