Prupe.5G096500_v2.0.a1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000959
Physical Location & Seq
Reverse (-)
10555443 .. 10556275
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G096500.1

Sequence Viewer

Length: 636 bp
ATGGCCAAGGTTCATCCCCTCATAATACCCAGTACTACTGATGAGGCTTCTTCTGCTACTGGTTTTGCTTCTTGTTCTAATAATAAATATATAACTTCAAAGCGAGAAACATTCACTATATGGATGAAATCGCTTGTGATGCAAGGAAGCGGATGCACTGCGTTTGATGAGAATGGAGAGATTGTGTATCGAATCGATAACTACGACAACAAGCACAGCAGCGAAGTTTATCTCATGGATCTCCAAGGAAAGCTTCTCTTCACCCTGTGTGAGATGAAAATGTGTGTTTTTCCAAGTTGGAAGGGCTACAAAAGCAGTGGTGTCAATAACAATAAGCCATGGTTTCAAGTGAGAAAAAGTTGCAGATCAATTTTTGGAAAGAAAGGGTTTTCCTATAAAGTAACCATGAGATCTGATAGCAGCTGTTACAGGTTAGAGAGCTTGAGTGGTAAATCATCAGAATTCAGAGTCACAGACAGCAATGGAGGAGTTGTGGCAGAGGCAAAGAGAAAGCAGTCAAGGTCAGGGGTAGTTTTGGGAGATGATGTGTTCACTTTGGTGGTGGAGCCTCATGTTGACCACTCCTTTATCATGGCTCTTGTCACTATTTATGGCTTAATTAGACATCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

212

Amino Acids

23.68

Weight (kDa)

9.08

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 246
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 461
AdeI CACNNNGTG 1 cut(s) 267
AfaI GTAC 1 cut(s) 34
AgsI TTSAA 2 cut(s) 99, 347
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AleI CACNNNNGTG 1 cut(s) 557
AluBI AGCT 3 cut(s) 253, 423, 441
AluI AGCT 3 cut(s) 253, 423, 441
AlwI GGATC 1 cut(s) 246
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 219, 420
ApoI RAATTY 1 cut(s) 461
AsuHPI GGTGA 1 cut(s) 253
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 231, 432
BglII AGATCT 1 cut(s) 410
BisI GCNGC 2 cut(s) 220, 421
BlsI GCNGC 2 cut(s) 221, 422
BmcAI AGTACT 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 567
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 129, 143
BmuI ACTGGG 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 463
Bsa29I ATCGAT 1 cut(s) 195
BsaJI CCNNGG 3 cut(s) 6, 244, 338
BsaXI ACNNNNNCTCC 6 cut(s) 168, 198, 477, 507, 531, 561
Bse1I ACTGG 2 cut(s) 30, 64
Bse3DI GCAATG 1 cut(s) 487
BseCI ATCGAT 1 cut(s) 195
BseDI CCNNGG 3 cut(s) 6, 244, 338
BseGI GGATG 3 cut(s) 13, 129, 158
BseMI GCAATG 1 cut(s) 487
BseNI ACTGG 2 cut(s) 30, 64
BseRI GAGGAG 1 cut(s) 501
BseXI GCAGC 2 cut(s) 231, 432
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 195
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 3 cut(s) 238, 365, 410
Bsp19I CCATGG 1 cut(s) 338
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 567
BspPI GGATC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 487
BsrI ACTGG 2 cut(s) 30, 64
BssECI CCNNGG 3 cut(s) 6, 244, 338
BssMI GATC 3 cut(s) 238, 365, 410
BssT1I CCWWGG 3 cut(s) 6, 244, 338
Bst6I CTCTTC 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 338
BstF5I GGATG 3 cut(s) 13, 129, 158
BstKTI GATC 3 cut(s) 241, 368, 413
BstMBI GATC 3 cut(s) 238, 365, 410
BstMWI GCNNNNNNNGC 3 cut(s) 53, 139, 312
BstV1I GCAGC 2 cut(s) 231, 432
BstX2I RGATCY 2 cut(s) 238, 410
BstYI RGATCY 2 cut(s) 238, 410
Bsu15I ATCGAT 1 cut(s) 195
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 338
BtsCI GGATG 3 cut(s) 13, 129, 158
BtsI GCAGTG 2 cut(s) 156, 322
BtsIMutI CAGTG 2 cut(s) 156, 322
ClaI ATCGAT 1 cut(s) 195
Csp6I GTAC 1 cut(s) 33
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 5 cut(s) 235, 339, 406, 572, 592
CviQI GTAC 1 cut(s) 33
DpnI GATC 3 cut(s) 240, 367, 412
DpnII GATC 3 cut(s) 238, 365, 410
DraIII CACNNNGTG 1 cut(s) 267
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco130I CCWWGG 3 cut(s) 6, 244, 338
EcoRI GAATTC 1 cut(s) 461
EcoT14I CCWWGG 3 cut(s) 6, 244, 338
ErhI CCWWGG 3 cut(s) 6, 244, 338
FaeI CATG 5 cut(s) 238, 342, 409, 575, 595
FalI AAGNNNNNCTT 4 cut(s) 237, 269, 242, 274
FatI CATG 5 cut(s) 234, 338, 405, 571, 591
Fnu4HI GCNGC 2 cut(s) 220, 421
FokI GGATG 2 cut(s) 136, 165
Fsp4HI GCNGC 2 cut(s) 220, 421
GluI GCNGC 2 cut(s) 220, 421
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 5 cut(s) 238, 342, 409, 575, 595
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 2 cut(s) 192, 468
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 552, 577
Hpy188I TCNGA 3 cut(s) 415, 460, 467
Hpy8I GTNNAC 2 cut(s) 552, 577
HpyAV CCTTC 1 cut(s) 295
HpyCH4V TGCA 3 cut(s) 142, 156, 363
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 139, 312
Hsp92II CATG 5 cut(s) 238, 342, 409, 575, 595
Kzo9I GATC 3 cut(s) 238, 365, 410
LmnI GCTCC 1 cut(s) 565
LpnPI CCDG 5 cut(s) 43, 45, 278, 415, 510
Lsp1109I GCAGC 2 cut(s) 231, 432
LweI GCATC 2 cut(s) 129, 143
MaeIII GTNAC 4 cut(s) 400, 425, 469, 601
MalI GATC 3 cut(s) 240, 367, 412
MboI GATC 3 cut(s) 238, 365, 410
MboII GAAGA 2 cut(s) 42, 250
MflI RGATCY 2 cut(s) 238, 410
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 369, 461, 618
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 477
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 5 cut(s) 29, 37, 479, 493, 579
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 617
MslI CAYNNNNRTG 1 cut(s) 557
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 423
MwoI GCNNNNNNNGC 3 cut(s) 53, 139, 312
NcoI CCATGG 1 cut(s) 338
NdeII GATC 3 cut(s) 238, 365, 410
NlaIII CATG 5 cut(s) 238, 342, 409, 575, 595
NlaIV GGNNCC 1 cut(s) 567
NmuCI GTSAC 2 cut(s) 469, 601
OliI CACNNNNGTG 1 cut(s) 557
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 2 cut(s) 221, 422
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
PspN4I GGNNCC 1 cut(s) 567
PsuI RGATCY 2 cut(s) 238, 410
PvuII CAGCTG 1 cut(s) 423
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
RseI CAYNNNNRTG 1 cut(s) 557
SaqAI TTAA 1 cut(s) 617
SatI GCNGC 2 cut(s) 220, 421
Sau3AI GATC 3 cut(s) 238, 365, 410
ScaI AGTACT 1 cut(s) 34
SchI GAGTC 1 cut(s) 477
SetI ASST 6 cut(s) 12, 255, 425, 434, 443, 524
SfaNI GCATC 2 cut(s) 129, 143
SmiMI CAYNNNNRTG 1 cut(s) 557
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
Sse9I AATT 3 cut(s) 369, 461, 618
SsiI CCGC 1 cut(s) 150
StyI CCWWGG 3 cut(s) 6, 244, 338
TaqI TCGA 2 cut(s) 190, 195
TasI AATT 3 cut(s) 369, 461, 618
TatI WGTACW 1 cut(s) 32
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 1 cut(s) 617
Tru9I TTAA 1 cut(s) 617
TscAI CASTG 2 cut(s) 163, 322
TseFI GTSAC 2 cut(s) 469, 601
TseI GCWGC 2 cut(s) 219, 420
Tsp45I GTSAC 2 cut(s) 469, 601
TspDTI ATGAA 2 cut(s) 140, 290
TspRI CASTG 2 cut(s) 163, 322
XapI RAATTY 1 cut(s) 461
ZrmI AGTACT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.