Rh7BG173600

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000959
Physical Location & Seq
Forward (+)
13615199 .. 13616310
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG173600.1

Sequence Viewer

Length: 468 bp
ATGGCGAAGGTTCATCCTGTAACAGTAGTCACCAATATTGAAGATGGTTCTTCAAGTACATCCTGTTCCAAGAACTACATGACTTCAAAGAGAGAAACATTCACTATATGGATGAAATCCCTTGTGATGCAAGGAAATGGATGCACAGCTTTCGACGAAAATGGTGAGATCGTTTATCGCATGGATAACTACGACGACAAGCACAGCAATGAAGTCTTCCTCATGGATCTCCACGGCAAGGTTCTCTTCACTCTATGTGAGCATAGAATGGGAATGATTTCGCGTTGGAAGGGCTACGCAACCAACGGGGCTAAGCCAATGTTTCGAGTGAGAAAGAGTTGCAGATCAATCCTCGGAAACAAAGAGTCTAGTAACTCGTACAAAGTAAGCATGAGATCCGACGGAAGTACGTTGCTACAGGTTACAAGGTTTGGCGGCTGGAAAATCAGCAGCTTTCAGATTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

155

Amino Acids

17.59

Weight (kDa)

9.36

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 33 - 134 2e-19 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 283
AciI CCGC 1 cut(s) 435
AclWI GGATC 2 cut(s) 234, 390
AfaI GTAC 3 cut(s) 58, 380, 409
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 3 cut(s) 41, 54, 87
AluBI AGCT 2 cut(s) 149, 453
AluI AGCT 2 cut(s) 149, 453
AlwI GGATC 2 cut(s) 234, 390
ApeKI GCWGC 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 22, 176
BbsI GAAGAC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 462
BccI CCATC 1 cut(s) 38
BceAI ACGGC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 416
BisI GCNGC 2 cut(s) 436, 451
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 2 cut(s) 437, 452
BmsI GCATC 2 cut(s) 117, 131
BpiI GAAGAC 1 cut(s) 208
Bpu1102I GCTNAGC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 232, 352
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 214
BseDI CCNNGG 2 cut(s) 232, 352
BseGI GGATG 4 cut(s) 13, 59, 117, 146
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 462
Bsh1236I CGCG 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 238
Bsp143I GATC 4 cut(s) 168, 226, 344, 395
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 1 cut(s) 435
BspFNI CGCG 1 cut(s) 283
BspPI GGATC 2 cut(s) 234, 390
BsrDI GCAATG 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 232, 352
BssMI GATC 4 cut(s) 168, 226, 344, 395
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 312
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 4 cut(s) 13, 59, 117, 146
BstFNI CGCG 1 cut(s) 283
BstKTI GATC 4 cut(s) 171, 229, 347, 398
BstMBI GATC 4 cut(s) 168, 226, 344, 395
BstSFI CTRYAG 1 cut(s) 416
BstUI CGCG 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 462
BstV2I GAAGAC 1 cut(s) 208
BstX2I RGATCY 2 cut(s) 226, 395
BstYI RGATCY 2 cut(s) 226, 395
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 4 cut(s) 13, 59, 117, 146
Csp6I GTAC 3 cut(s) 57, 379, 408
CviAII CATG 4 cut(s) 79, 181, 223, 391
CviJI RGCY 6 cut(s) 149, 294, 311, 316, 438, 453
CviKI_1 RGCY 6 cut(s) 149, 294, 311, 316, 438, 453
CviQI GTAC 3 cut(s) 57, 379, 408
DdeI CTNAG 1 cut(s) 312
DpnI GATC 4 cut(s) 170, 228, 346, 397
DpnII GATC 4 cut(s) 168, 226, 344, 395
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
FaeI CATG 4 cut(s) 82, 184, 226, 394
FaiI YATR 8 cut(s) 80, 107, 109, 182, 224, 256, 264, 392
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FatI CATG 4 cut(s) 78, 180, 222, 390
Fnu4HI GCNGC 2 cut(s) 436, 451
FokI GGATG 3 cut(s) 46, 124, 153
Fsp4HI GCNGC 2 cut(s) 436, 451
FspBI CTAG 1 cut(s) 369
GluI GCNGC 2 cut(s) 436, 451
Hin1II CATG 4 cut(s) 82, 184, 226, 394
HinfI GANTC 1 cut(s) 365
HphI GGTGA 2 cut(s) 22, 176
Hpy188I TCNGA 3 cut(s) 356, 400, 459
Hpy99I CGWCG 3 cut(s) 158, 197, 404
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 410
HpyCH4V TGCA 3 cut(s) 130, 144, 342
HpyF3I CTNAG 1 cut(s) 312
HpySE526I ACGT 1 cut(s) 410
Hsp92II CATG 4 cut(s) 82, 184, 226, 394
Kzo9I GATC 4 cut(s) 168, 226, 344, 395
LpnPI CCDG 4 cut(s) 30, 76, 404, 424
Lsp1109I GCAGC 1 cut(s) 462
LweI GCATC 2 cut(s) 117, 131
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 410
MaeIII GTNAC 4 cut(s) 19, 28, 371, 421
MalI GATC 4 cut(s) 170, 228, 346, 397
MboI GATC 4 cut(s) 168, 226, 344, 395
MboII GAAGA 4 cut(s) 42, 53, 208, 238
MflI RGATCY 2 cut(s) 226, 395
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 2 cut(s) 266, 423
MnlI CCTC 2 cut(s) 230, 362
MroXI GAANNNNTTC 1 cut(s) 277
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 207
MvnI CGCG 1 cut(s) 283
NdeII GATC 4 cut(s) 168, 226, 344, 395
NlaIII CATG 4 cut(s) 82, 184, 226, 394
NmuCI GTSAC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 277
PkrI GCNGC 2 cut(s) 437, 452
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PsrI GAACNNNNNNTAC 2 cut(s) 49, 81
PsuI RGATCY 2 cut(s) 226, 395
RsaI GTAC 3 cut(s) 58, 380, 409
RsaNI GTAC 3 cut(s) 57, 379, 408
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 2 cut(s) 436, 451
Sau3AI GATC 4 cut(s) 168, 226, 344, 395
SchI GAGTC 1 cut(s) 374
SetI ASST 7 cut(s) 12, 151, 243, 413, 423, 431, 455
SfaNI GCATC 2 cut(s) 117, 131
SfcI CTRYAG 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 207
SsiI CCGC 1 cut(s) 435
SspI AATATT 1 cut(s) 37
SspMI CTAG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 413
TaqI TCGA 2 cut(s) 153, 325
TatI WGTACW 1 cut(s) 56
TauI GCSGC 1 cut(s) 438
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 450
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 128, 225
TspGWI ACGGA 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 277
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.